Wall clock time and date at job start Tue Mar 31 2020 20:47:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53003 * 109.47082 * 2 1 4 4 C 1.53001 * 109.47215 * 120.00043 * 2 1 3 5 5 H 1.08999 * 109.49447 * 178.61517 * 4 2 1 6 6 C 1.53244 * 109.49087 * 298.69517 * 4 2 1 7 7 N 1.47082 * 108.51833 * 173.79184 * 6 4 2 8 8 C 1.34772 * 120.88332 * 128.83504 * 7 6 4 9 9 O 1.21587 * 119.99929 * 354.94743 * 8 7 6 10 10 N 1.34780 * 119.99738 * 174.94484 * 8 7 6 11 11 C 1.40201 * 119.99416 * 185.03573 * 10 8 7 12 12 C 1.40400 * 125.97287 * 359.97438 * 11 10 8 13 13 C 1.35245 * 107.86259 * 180.02562 * 12 11 10 14 14 N 1.34962 * 107.86378 * 0.02562 * 13 12 11 15 15 C 1.46495 * 125.97965 * 179.97438 * 14 13 12 16 16 C 1.50699 * 109.47531 * 124.99983 * 15 14 13 17 17 H 1.08007 * 119.99381 * 0.02562 * 16 15 14 18 18 C 1.37871 * 120.00301 * 179.97438 * 16 15 14 19 19 N 1.31510 * 120.00115 * 0.02562 * 18 16 15 20 20 Si 1.86803 * 119.99992 * 179.97438 * 18 16 15 21 21 H 1.48501 * 109.47102 * 0.02562 * 20 18 16 22 22 H 1.48498 * 109.46806 * 120.00236 * 20 18 16 23 23 H 1.48500 * 109.47584 * 240.00483 * 20 18 16 24 24 N 1.31211 * 125.96894 * 179.69569 * 11 10 8 25 25 C 1.47083 * 118.23729 * 308.81253 * 7 6 4 26 26 C 1.53242 * 108.52191 * 51.18531 * 25 7 6 27 27 N 1.46898 * 109.49316 * 58.55873 * 4 2 1 28 28 C 1.46906 * 110.99775 * 52.78465 * 27 4 2 29 29 H 1.09004 * 109.47262 * 55.89555 * 1 2 3 30 30 H 1.08993 * 109.47178 * 175.89913 * 1 2 3 31 31 H 1.09008 * 109.46762 * 295.89541 * 1 2 3 32 32 H 1.09003 * 109.47220 * 239.99923 * 2 1 3 33 33 H 1.09003 * 109.47156 * 59.99884 * 3 2 1 34 34 H 1.09003 * 109.46787 * 180.02562 * 3 2 1 35 35 H 1.08999 * 109.47161 * 300.00239 * 3 2 1 36 36 H 1.08998 * 109.62843 * 293.49382 * 6 4 2 37 37 H 1.08997 * 109.62646 * 54.07996 * 6 4 2 38 38 H 0.96997 * 120.00303 * 5.03709 * 10 8 7 39 39 H 1.07991 * 126.06999 * 0.02562 * 12 11 10 40 40 H 1.08005 * 126.06815 * 180.02562 * 13 12 11 41 41 H 1.09004 * 109.47659 * 245.00326 * 15 14 13 42 42 H 1.08997 * 109.47248 * 4.99930 * 15 14 13 43 43 H 0.97003 * 120.00399 * 179.97438 * 19 18 16 44 44 H 1.09004 * 109.63044 * 291.48287 * 25 7 6 45 45 H 1.08997 * 109.62983 * 170.89545 * 25 7 6 46 46 H 1.08994 * 109.49440 * 186.21586 * 26 25 7 47 47 H 1.08994 * 109.51426 * 66.13955 * 26 25 7 48 48 H 1.09001 * 109.47095 * 63.65171 * 28 27 4 49 49 H 1.09000 * 109.46852 * 183.64492 * 28 27 4 50 50 H 1.08996 * 109.47145 * 303.64910 * 28 27 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 1 3.1297 -0.7430 1.2373 6 6 1.5565 0.0195 2.5006 7 7 1.9295 -0.7700 3.6842 8 6 2.5881 -0.2031 4.7144 9 8 2.9626 0.9509 4.6353 10 7 2.8313 -0.9156 5.8323 11 6 3.4216 -0.2966 6.9433 12 6 3.8086 1.0503 7.0280 13 6 4.3356 1.2540 8.2568 14 7 4.2868 0.0838 8.9274 15 6 4.7553 -0.1437 10.2966 16 6 3.6357 -0.7259 11.1205 17 1 2.6717 -0.9085 10.6691 18 6 3.8424 -1.0262 12.4501 19 7 5.0164 -0.8043 12.9996 20 14 2.4544 -1.7472 13.4715 21 1 1.2438 -1.8985 12.6248 22 1 2.8625 -3.0763 13.9931 23 1 2.1536 -0.8404 14.6083 24 7 3.7042 -0.8738 8.0872 25 6 1.5643 -2.1944 3.7138 26 6 2.0474 -2.8480 2.4147 27 7 1.5224 -2.0959 1.2673 28 6 1.8187 -2.7866 0.0050 29 1 -0.3634 0.5762 -0.8509 30 1 -0.3633 -1.0250 -0.0735 31 1 -0.3633 0.4489 0.9246 32 1 1.8934 -0.5139 -0.8900 33 1 1.6766 1.9564 0.8900 34 1 3.1300 1.4425 -0.0005 35 1 1.6766 1.9564 -0.8899 36 1 2.0292 1.0004 2.5510 37 1 0.4732 0.1334 2.4629 38 1 2.5981 -1.8564 5.8683 39 1 3.7040 1.7921 6.2501 40 1 4.7262 2.1875 8.6344 41 1 5.5952 -0.8383 10.2827 42 1 5.0738 0.8026 10.7336 43 1 5.1618 -1.0153 13.9352 44 1 0.4816 -2.2933 3.7927 45 1 2.0420 -2.6773 4.5663 46 1 1.6894 -3.8765 2.3700 47 1 3.1370 -2.8405 2.3867 48 1 2.8983 -2.8787 -0.1141 49 1 1.3688 -3.7793 0.0197 50 1 1.4089 -2.2142 -0.8272 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000486954782.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:47:39 Heat of formation + Delta-G solvation = 54.653381 kcal Electronic energy + Delta-G solvation = -29398.300633 eV Core-core repulsion = 25462.342693 eV Total energy + Delta-G solvation = -3935.957940 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 4.35 seconds Orbital eigenvalues (eV) -42.33720 -41.45343 -39.88884 -36.59429 -36.27703 -35.32955 -35.20891 -32.75229 -31.03607 -30.83173 -29.59870 -28.42086 -27.92583 -25.76083 -25.31357 -24.79817 -23.17751 -22.41678 -21.86565 -20.59357 -19.82874 -19.22071 -18.68307 -18.11603 -17.48341 -16.86480 -16.74196 -16.38662 -16.14183 -16.07958 -15.69338 -15.64790 -15.45227 -14.77857 -14.71539 -14.47384 -14.25540 -14.07311 -13.87356 -13.70505 -13.63628 -13.37499 -13.00428 -12.92869 -12.81537 -12.73152 -12.54579 -12.47654 -12.30433 -12.08004 -12.03805 -11.76403 -11.64714 -11.54530 -11.41467 -11.36156 -11.05166 -10.72152 -9.93526 -9.71654 -9.30719 -9.03581 -8.32602 -6.46642 1.04568 1.07574 1.37600 1.38879 1.52135 1.66223 1.99691 2.35223 2.35579 2.78118 2.84882 2.98988 3.68086 3.77139 3.87213 3.98908 4.06770 4.09029 4.23081 4.26022 4.32180 4.40870 4.53239 4.61865 4.65230 4.72330 4.72840 4.80175 4.80655 4.88681 4.89611 4.93887 5.00051 5.01429 5.07277 5.09151 5.12613 5.20196 5.26461 5.42075 5.49268 5.56247 5.58616 5.66246 5.83099 5.94267 6.02334 6.06885 6.28798 6.56615 6.67117 7.08601 7.23317 7.33028 8.75133 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.022473 B = 0.002222 C = 0.002114 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1245.664544 B =12600.388377 C =13239.209920 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.084 4.084 3 C -0.152 4.152 4 C 0.082 3.918 5 H 0.027 0.973 6 C 0.136 3.864 7 N -0.621 5.621 8 C 0.713 3.287 9 O -0.599 6.599 10 N -0.637 5.637 11 C 0.284 3.716 12 C -0.293 4.293 13 C 0.058 3.942 14 N -0.344 5.344 15 C 0.272 3.728 16 C -0.545 4.545 17 H 0.052 0.948 18 C 0.017 3.983 19 N -0.921 5.921 20 Si 0.973 3.027 21 H -0.274 1.274 22 H -0.273 1.273 23 H -0.270 1.270 24 N -0.346 5.346 25 C 0.107 3.893 26 C 0.044 3.956 27 N -0.535 5.535 28 C 0.020 3.980 29 H 0.058 0.942 30 H 0.065 0.935 31 H 0.050 0.950 32 H 0.084 0.916 33 H 0.053 0.947 34 H 0.048 0.952 35 H 0.071 0.929 36 H 0.083 0.917 37 H 0.087 0.913 38 H 0.417 0.583 39 H 0.165 0.835 40 H 0.202 0.798 41 H 0.021 0.979 42 H 0.059 0.941 43 H 0.272 0.728 44 H 0.095 0.905 45 H 0.088 0.912 46 H 0.114 0.886 47 H 0.028 0.972 48 H 0.020 0.980 49 H 0.081 0.919 50 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.805 -2.260 -28.845 30.244 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.103 4.103 3 C -0.210 4.210 4 C -0.027 4.027 5 H 0.045 0.955 6 C 0.014 3.986 7 N -0.358 5.358 8 C 0.414 3.586 9 O -0.477 6.477 10 N -0.291 5.291 11 C 0.028 3.972 12 C -0.324 4.324 13 C -0.091 4.091 14 N -0.126 5.126 15 C 0.154 3.846 16 C -0.584 4.584 17 H 0.070 0.930 18 C -0.183 4.183 19 N -0.560 5.560 20 Si 0.797 3.203 21 H -0.199 1.199 22 H -0.198 1.198 23 H -0.195 1.195 24 N -0.178 5.178 25 C -0.016 4.016 26 C -0.085 4.085 27 N -0.259 5.259 28 C -0.127 4.127 29 H 0.077 0.923 30 H 0.084 0.916 31 H 0.069 0.931 32 H 0.102 0.898 33 H 0.072 0.928 34 H 0.067 0.933 35 H 0.090 0.910 36 H 0.102 0.898 37 H 0.105 0.895 38 H 0.256 0.744 39 H 0.182 0.818 40 H 0.219 0.781 41 H 0.039 0.961 42 H 0.077 0.923 43 H 0.082 0.918 44 H 0.113 0.887 45 H 0.106 0.894 46 H 0.132 0.868 47 H 0.046 0.954 48 H 0.039 0.961 49 H 0.100 0.900 50 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -8.952 -2.537 -27.917 29.427 hybrid contribution 0.678 -0.139 0.469 0.836 sum -8.274 -2.677 -27.448 28.793 Atomic orbital electron populations 1.21770 0.93553 1.02537 1.01555 1.21165 0.97429 0.95717 0.95956 1.21914 1.00750 0.95756 1.02554 1.21972 0.96088 0.89381 0.95289 0.95455 1.21893 1.00971 0.94571 0.81212 1.47381 1.59054 1.11845 1.17519 1.15687 0.78914 0.84070 0.79887 1.90814 1.57675 1.17683 1.81497 1.41571 1.63331 1.13923 1.10275 1.19090 0.98111 0.92400 0.87595 1.21653 1.14876 0.96321 0.99549 1.23147 1.00840 0.92455 0.92637 1.48830 1.44996 1.05988 1.12833 1.19345 0.94794 0.98185 0.72303 1.21420 0.97896 1.43657 0.95379 0.92981 1.25748 0.98666 0.95424 0.98454 1.70000 1.23633 1.48243 1.14095 0.85287 0.78559 0.78349 0.78132 1.19901 1.19819 1.19522 1.77238 1.23164 1.16347 1.01004 1.22047 1.02357 0.78759 0.98425 1.22502 0.97299 0.98929 0.89736 1.61988 1.59011 1.01469 1.03444 1.22515 0.98938 0.99950 0.91315 0.92254 0.91592 0.93080 0.89758 0.92839 0.93321 0.91045 0.89833 0.89457 0.74358 0.81755 0.78133 0.96059 0.92322 0.91849 0.88682 0.89388 0.86823 0.95389 0.96143 0.89989 0.89765 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.45 8.63 71.98 0.62 -0.83 16 2 C -0.08 -0.98 2.20 -10.79 -0.02 -1.00 16 3 C -0.15 -1.92 8.82 71.98 0.63 -1.28 16 4 C 0.08 1.28 1.84 45.00 0.08 1.36 16 5 H 0.03 0.54 8.14 -2.39 -0.02 0.52 16 6 C 0.14 2.68 5.12 86.35 0.44 3.12 16 7 N -0.62 -14.05 3.01 -835.92 -2.52 -16.56 16 8 C 0.71 22.32 8.27 179.05 1.48 23.80 16 9 O -0.60 -22.49 12.95 -3.99 -0.05 -22.55 16 10 N -0.64 -20.86 5.36 -321.23 -1.72 -22.59 16 11 C 0.28 11.83 8.11 133.31 1.08 12.91 16 12 C -0.29 -11.99 9.61 22.11 0.21 -11.78 16 13 C 0.06 2.35 11.44 83.52 0.96 3.30 16 14 N -0.34 -16.54 3.67 -351.85 -1.29 -17.84 16 15 C 0.27 14.32 6.26 85.63 0.54 14.85 16 16 C -0.55 -31.04 9.23 25.60 0.24 -30.81 16 17 H 0.05 3.09 7.81 -2.91 -0.02 3.07 16 18 C 0.02 0.96 5.46 84.65 0.46 1.42 16 19 N -0.92 -52.44 13.29 21.44 0.28 -52.15 16 20 Si 0.97 43.82 29.54 68.60 2.03 45.85 16 21 H -0.27 -12.40 7.11 99.48 0.71 -11.69 16 22 H -0.27 -11.86 7.11 99.48 0.71 -11.16 16 23 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 24 N -0.35 -16.52 12.42 -54.43 -0.68 -17.19 16 25 C 0.11 1.67 6.54 86.35 0.56 2.24 16 26 C 0.04 0.57 5.62 86.38 0.49 1.06 16 27 N -0.53 -6.92 4.02 -896.08 -3.61 -10.53 16 28 C 0.02 0.19 8.87 127.69 1.13 1.32 16 29 H 0.06 0.53 8.14 -2.39 -0.02 0.51 16 30 H 0.07 0.71 7.13 -2.39 -0.02 0.69 16 31 H 0.05 0.63 6.14 -2.38 -0.01 0.61 16 32 H 0.08 0.84 6.33 -2.39 -0.02 0.83 16 33 H 0.05 0.78 6.56 -2.39 -0.02 0.76 16 34 H 0.05 0.68 8.14 -2.39 -0.02 0.66 16 35 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 36 H 0.08 1.96 5.69 -2.39 -0.01 1.95 16 37 H 0.09 1.57 6.11 -2.39 -0.01 1.55 16 38 H 0.42 11.22 6.36 -92.71 -0.59 10.63 16 39 H 0.17 6.61 5.93 -2.92 -0.02 6.59 16 40 H 0.20 6.45 8.06 -2.91 -0.02 6.43 16 41 H 0.02 1.20 8.14 -2.38 -0.02 1.18 16 42 H 0.06 3.01 8.07 -2.39 -0.02 2.99 16 43 H 0.27 14.45 8.31 -92.71 -0.77 13.68 16 44 H 0.10 1.29 8.14 -2.38 -0.02 1.27 16 45 H 0.09 1.28 5.74 -2.39 -0.01 1.27 16 46 H 0.11 0.98 8.10 -2.39 -0.02 0.96 16 47 H 0.03 0.44 8.14 -2.39 -0.02 0.42 16 48 H 0.02 0.22 8.14 -2.39 -0.02 0.20 16 49 H 0.08 0.59 8.13 -2.39 -0.02 0.57 16 50 H 0.08 0.66 5.58 -2.39 -0.01 0.65 16 Total: -1.00 -70.64 386.76 1.72 -68.93 By element: Atomic # 1 Polarization: 24.57 SS G_CDS: 0.37 Total: 24.93 kcal Atomic # 6 Polarization: 10.79 SS G_CDS: 8.90 Total: 19.69 kcal Atomic # 7 Polarization: -127.33 SS G_CDS: -9.53 Total: -136.85 kcal Atomic # 8 Polarization: -22.49 SS G_CDS: -0.05 Total: -22.55 kcal Atomic # 14 Polarization: 43.82 SS G_CDS: 2.03 Total: 45.85 kcal Total: -70.64 1.72 -68.93 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000486954782.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.580 kcal (2) G-P(sol) polarization free energy of solvation -70.645 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.935 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.718 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.927 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.653 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.35 seconds