Wall clock time and date at job start Tue Mar 31 2020 20:22:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53001 * 109.47030 * 2 1 4 4 C 1.50694 * 109.47353 * 120.00211 * 2 1 3 5 5 N 1.30715 * 125.52842 * 300.04414 * 4 2 1 6 6 N 1.40447 * 106.79441 * 179.71708 * 5 4 2 7 7 H 0.96996 * 126.82272 * 180.25829 * 6 5 4 8 8 C 1.34432 * 106.35269 * 0.39571 * 6 5 4 9 9 C 1.50694 * 125.95881 * 179.86154 * 8 6 5 10 10 N 1.46503 * 109.47263 * 94.69696 * 9 8 6 11 11 C 1.34773 * 120.00018 * 180.02562 * 10 9 8 12 12 O 1.21588 * 120.00335 * 4.97733 * 11 10 9 13 13 N 1.34782 * 119.99805 * 184.97803 * 11 10 9 14 14 C 1.46920 * 120.62999 * 354.77405 * 13 11 10 15 15 C 1.53192 * 108.89365 * 233.67548 * 14 13 11 16 16 C 1.53031 * 109.31310 * 305.29643 * 15 14 13 17 17 C 1.53004 * 109.45852 * 181.38124 * 16 15 14 18 18 C 1.50709 * 109.46887 * 175.00060 * 17 16 15 19 19 H 1.07992 * 119.99864 * 0.02562 * 18 17 16 20 20 C 1.37881 * 119.99608 * 180.02562 * 18 17 16 21 21 N 1.31516 * 119.99770 * 180.02562 * 20 18 17 22 22 Si 1.86798 * 120.00216 * 359.97438 * 20 18 17 23 23 H 1.48502 * 109.46848 * 90.00253 * 22 20 18 24 24 H 1.48493 * 109.47425 * 210.00077 * 22 20 18 25 25 H 1.48500 * 109.47487 * 330.00736 * 22 20 18 26 26 C 1.53041 * 109.53895 * 61.36520 * 16 15 14 27 27 C 1.47201 * 120.81146 * 174.91534 * 13 11 10 28 28 N 1.30833 * 108.07802 * 359.60165 * 8 6 5 29 29 H 1.08996 * 109.46740 * 299.99926 * 1 2 3 30 30 H 1.08991 * 109.46884 * 59.99690 * 1 2 3 31 31 H 1.09002 * 109.46798 * 180.02562 * 1 2 3 32 32 H 1.09004 * 109.46502 * 240.00100 * 2 1 3 33 33 H 1.09002 * 109.47107 * 180.02562 * 3 2 1 34 34 H 1.09005 * 109.47100 * 300.00294 * 3 2 1 35 35 H 1.09000 * 109.46914 * 60.00111 * 3 2 1 36 36 H 1.08997 * 109.47030 * 334.69334 * 9 8 6 37 37 H 1.09000 * 109.47174 * 214.69275 * 9 8 6 38 38 H 0.97009 * 119.99546 * 359.97438 * 10 9 8 39 39 H 1.09008 * 109.58722 * 113.82105 * 14 13 11 40 40 H 1.09004 * 109.59155 * 353.53507 * 14 13 11 41 41 H 1.09008 * 109.49387 * 65.25184 * 15 14 13 42 42 H 1.09004 * 109.49973 * 185.30625 * 15 14 13 43 43 H 1.08995 * 109.46445 * 301.35465 * 16 15 14 44 44 H 1.08997 * 109.47461 * 294.99773 * 17 16 15 45 45 H 1.09002 * 109.47179 * 54.99943 * 17 16 15 46 46 H 0.97002 * 120.00034 * 179.97438 * 21 20 18 47 47 H 1.08997 * 109.50104 * 58.58643 * 26 16 15 48 48 H 1.09006 * 109.49750 * 178.68531 * 26 16 15 49 49 H 1.09000 * 109.53945 * 6.53126 * 27 13 11 50 50 H 1.09004 * 109.67937 * 246.22854 * 27 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7104 1.2304 5 7 1.7835 -0.3598 2.4648 6 7 2.4344 -1.2912 3.2903 7 1 2.4379 -1.3058 4.2601 8 6 3.0541 -2.1566 2.4692 9 6 3.8886 -3.3371 2.8945 10 7 3.0553 -4.5419 2.9159 11 6 3.5921 -5.7264 3.2696 12 8 4.7431 -5.7806 3.6577 13 7 2.8530 -6.8509 3.1932 14 6 1.4292 -6.7881 2.8362 15 6 0.6156 -7.5149 3.9116 16 6 1.1561 -8.9366 4.0806 17 6 0.3239 -9.6769 5.1296 18 6 0.7762 -11.1123 5.2081 19 1 1.5774 -11.4614 4.5737 20 6 0.1672 -11.9798 6.0900 21 7 0.5622 -13.2323 6.1589 22 14 -1.2181 -11.3756 7.1879 23 1 -2.5174 -11.5627 6.4935 24 1 -1.2185 -12.1492 8.4554 25 1 -1.0200 -9.9347 7.4873 26 6 2.6159 -8.8784 4.5363 27 6 3.4522 -8.1671 3.4679 28 7 2.8017 -1.7984 1.2364 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 1.8933 -0.5139 -0.8901 33 1 3.1301 1.4425 -0.0005 34 1 1.6766 1.9564 -0.8900 35 1 1.6767 1.9563 0.8900 36 1 4.2922 -3.1567 3.8908 37 1 4.7086 -3.4752 2.1898 38 1 2.1169 -4.4868 2.6762 39 1 1.2728 -7.2706 1.8713 40 1 1.1122 -5.7467 2.7797 41 1 0.7008 -6.9784 4.8567 42 1 -0.4310 -7.5564 3.6100 43 1 1.0937 -9.4643 3.1290 44 1 0.4565 -9.2006 6.1010 45 1 -0.7288 -9.6425 4.8487 46 1 0.1340 -13.8425 6.7795 47 1 2.6823 -8.3293 5.4755 48 1 2.9932 -9.8911 4.6790 49 1 4.4718 -8.0351 3.8299 50 1 3.4628 -8.7633 2.5554 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000563048823.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:22:28 Heat of formation + Delta-G solvation = 40.473070 kcal Electronic energy + Delta-G solvation = -28645.307118 eV Core-core repulsion = 24708.734273 eV Total energy + Delta-G solvation = -3936.572844 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.69869 -40.37698 -37.72596 -36.34379 -35.08261 -34.12277 -32.68032 -32.20821 -31.44926 -30.63242 -28.74897 -27.59440 -27.05377 -24.63277 -24.19683 -22.90688 -21.81242 -21.48646 -20.17298 -20.06549 -19.46072 -18.59682 -17.89596 -16.79137 -16.60620 -15.80624 -15.76358 -15.32264 -15.10982 -14.55759 -14.38490 -14.27442 -14.24429 -13.84503 -13.55623 -13.45296 -13.26911 -12.99115 -12.94184 -12.61956 -12.40843 -12.37313 -12.08085 -11.96588 -11.71211 -11.53431 -11.41387 -11.18409 -10.91596 -10.68140 -10.54860 -10.48876 -10.41418 -10.26199 -9.95911 -9.83239 -9.72755 -9.53426 -9.43871 -9.09103 -8.55422 -8.39447 -6.05975 -4.03461 0.97145 2.06700 2.25914 2.76135 3.12883 3.27826 3.35570 3.36111 3.38772 3.78533 4.04908 4.18980 4.43009 4.59239 4.67855 4.84087 4.88103 5.04669 5.12100 5.19491 5.21285 5.24678 5.29793 5.38528 5.40115 5.50227 5.50577 5.56493 5.70562 5.76693 5.77954 5.79306 5.85724 5.99661 6.00425 6.08627 6.16864 6.24679 6.35364 6.48526 6.52055 6.76289 6.84340 6.87729 7.02054 7.20915 7.40840 7.60994 7.77519 7.82168 8.49206 8.51814 8.98932 9.56871 11.07241 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.018929 B = 0.002071 C = 0.001957 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1478.860039 B =13513.783748 C =14302.714371 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.003 4.003 3 C -0.143 4.143 4 C 0.233 3.767 5 N -0.302 5.302 6 N -0.471 5.471 7 H 0.443 0.557 8 C 0.270 3.730 9 C 0.221 3.779 10 N -0.748 5.748 11 C 0.713 3.287 12 O -0.591 6.591 13 N -0.620 5.620 14 C 0.114 3.886 15 C -0.133 4.133 16 C -0.072 4.072 17 C -0.009 4.009 18 C -0.516 4.516 19 H 0.074 0.926 20 C 0.065 3.935 21 N -0.903 5.903 22 Si 0.878 3.122 23 H -0.278 1.278 24 H -0.289 1.289 25 H -0.267 1.267 26 C -0.120 4.120 27 C 0.127 3.873 28 N -0.520 5.520 29 H 0.062 0.938 30 H 0.068 0.932 31 H 0.057 0.943 32 H 0.099 0.901 33 H 0.057 0.943 34 H 0.068 0.932 35 H 0.062 0.938 36 H 0.092 0.908 37 H 0.106 0.894 38 H 0.399 0.601 39 H 0.070 0.930 40 H 0.064 0.936 41 H 0.061 0.939 42 H 0.071 0.929 43 H 0.065 0.935 44 H 0.014 0.986 45 H 0.011 0.989 46 H 0.262 0.738 47 H 0.057 0.943 48 H 0.091 0.909 49 H 0.088 0.912 50 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.032 27.784 -10.976 29.943 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.024 4.024 3 C -0.202 4.202 4 C -0.050 4.050 5 N -0.131 5.131 6 N -0.190 5.190 7 H 0.290 0.710 8 C -0.010 4.010 9 C 0.094 3.906 10 N -0.409 5.409 11 C 0.414 3.586 12 O -0.469 6.469 13 N -0.356 5.356 14 C -0.010 4.010 15 C -0.171 4.171 16 C -0.091 4.091 17 C -0.046 4.046 18 C -0.554 4.554 19 H 0.092 0.908 20 C -0.136 4.136 21 N -0.542 5.542 22 Si 0.706 3.294 23 H -0.204 1.204 24 H -0.215 1.215 25 H -0.192 1.192 26 C -0.158 4.158 27 C 0.005 3.995 28 N -0.248 5.248 29 H 0.081 0.919 30 H 0.087 0.913 31 H 0.077 0.923 32 H 0.117 0.883 33 H 0.076 0.924 34 H 0.087 0.913 35 H 0.081 0.919 36 H 0.110 0.890 37 H 0.124 0.876 38 H 0.236 0.764 39 H 0.089 0.911 40 H 0.082 0.918 41 H 0.079 0.921 42 H 0.089 0.911 43 H 0.084 0.916 44 H 0.033 0.967 45 H 0.029 0.971 46 H 0.072 0.928 47 H 0.076 0.924 48 H 0.109 0.891 49 H 0.107 0.893 50 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 2.551 28.018 -10.752 30.119 hybrid contribution -1.269 0.034 1.357 1.858 sum 1.282 28.052 -9.395 29.612 Atomic orbital electron populations 1.21836 0.93069 1.02521 1.02789 1.19573 0.96233 0.95257 0.91299 1.21832 1.01355 0.94196 1.02777 1.24324 0.94791 0.92169 0.93728 1.78002 1.19688 1.13153 1.02261 1.48092 1.38635 1.21509 1.10724 0.71028 1.24259 0.95824 0.94505 0.86407 1.19411 0.90709 0.77431 1.03048 1.45116 1.13808 1.06391 1.75544 1.15661 0.84522 0.79970 0.78425 1.90919 1.16933 1.85399 1.53628 1.47415 1.10047 1.05870 1.72282 1.21670 0.80434 0.99803 0.99061 1.22068 0.98965 0.97937 0.98121 1.20999 0.94810 0.92786 1.00455 1.19618 0.94698 0.96335 0.93979 1.21132 1.19737 0.92512 1.22012 0.90775 1.25034 0.96868 0.94764 0.96885 1.69913 1.42400 1.04231 1.37671 0.86810 0.82928 0.79264 0.80420 1.20415 1.21487 1.19166 1.21921 0.95360 1.01429 0.97075 1.21754 0.98101 0.80567 0.99117 1.70432 1.19408 1.14874 1.20121 0.91885 0.91313 0.92339 0.88259 0.92423 0.91333 0.91891 0.88999 0.87649 0.76411 0.91132 0.91774 0.92070 0.91084 0.91631 0.96730 0.97119 0.92792 0.92402 0.89106 0.89317 0.91655 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.89 9.18 37.16 0.34 -0.55 16 2 C 0.00 -0.02 3.39 -91.77 -0.31 -0.33 16 3 C -0.14 -0.85 9.18 37.16 0.34 -0.50 16 4 C 0.23 2.28 6.65 -156.85 -1.04 1.23 16 5 N -0.30 -2.98 12.80 32.42 0.41 -2.56 16 6 N -0.47 -3.72 7.45 32.62 0.24 -3.48 16 7 H 0.44 2.23 8.96 -182.34 -1.63 0.60 16 8 C 0.27 2.39 7.60 -155.69 -1.18 1.20 16 9 C 0.22 1.90 6.30 -5.19 -0.03 1.87 16 10 N -0.75 -7.64 5.46 -66.42 -0.36 -8.00 16 11 C 0.71 9.89 8.30 -86.92 -0.72 9.17 16 12 O -0.59 -10.11 15.79 5.29 0.08 -10.03 16 13 N -0.62 -8.46 2.98 -178.27 -0.53 -9.00 16 14 C 0.11 1.32 6.38 -3.71 -0.02 1.30 16 15 C -0.13 -1.87 5.36 -26.62 -0.14 -2.01 16 16 C -0.07 -1.29 2.10 -90.58 -0.19 -1.48 16 17 C -0.01 -0.20 3.52 -27.88 -0.10 -0.30 16 18 C -0.52 -13.99 8.94 -34.43 -0.31 -14.30 16 19 H 0.07 2.15 7.30 -52.49 -0.38 1.76 16 20 C 0.07 1.86 5.47 -17.82 -0.10 1.77 16 21 N -0.90 -27.34 13.96 55.43 0.77 -26.56 16 22 Si 0.88 21.37 27.47 -169.99 -4.67 16.70 16 23 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 24 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 25 H -0.27 -6.26 6.54 56.52 0.37 -5.89 16 26 C -0.12 -2.08 5.19 -26.61 -0.14 -2.22 16 27 C 0.13 1.90 6.45 -3.56 -0.02 1.88 16 28 N -0.52 -5.51 11.19 -8.16 -0.09 -5.60 16 29 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 30 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 31 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 32 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16 33 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 34 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 35 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 36 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 37 H 0.11 0.96 8.14 -51.93 -0.42 0.54 16 38 H 0.40 3.62 5.95 -40.82 -0.24 3.38 16 39 H 0.07 0.78 8.14 -51.92 -0.42 0.35 16 40 H 0.06 0.59 5.64 -51.93 -0.29 0.30 16 41 H 0.06 0.89 8.14 -51.92 -0.42 0.47 16 42 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 43 H 0.07 1.20 8.14 -51.93 -0.42 0.77 16 44 H 0.01 0.33 7.20 -51.93 -0.37 -0.04 16 45 H 0.01 0.24 7.57 -51.93 -0.39 -0.16 16 46 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 47 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 48 H 0.09 1.76 6.91 -51.93 -0.36 1.40 16 49 H 0.09 1.39 7.01 -51.93 -0.36 1.03 16 50 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 LS Contribution 398.83 15.07 6.01 6.01 Total: -1.00 -33.93 398.83 -11.31 -45.24 By element: Atomic # 1 Polarization: 10.10 SS G_CDS: -9.55 Total: 0.55 kcal Atomic # 6 Polarization: 0.36 SS G_CDS: -3.63 Total: -3.28 kcal Atomic # 7 Polarization: -55.65 SS G_CDS: 0.45 Total: -55.20 kcal Atomic # 8 Polarization: -10.11 SS G_CDS: 0.08 Total: -10.03 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -4.67 Total: 16.70 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -33.93 -11.31 -45.24 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000563048823.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.713 kcal (2) G-P(sol) polarization free energy of solvation -33.927 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.786 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.313 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.240 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.473 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds