Wall clock time and date at job start Tue Mar 31 2020 19:16:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.30827 * 125.96367 * 2 1 4 4 C 1.33245 * 109.83052 * 180.13075 * 3 2 1 5 5 C 1.50697 * 125.52762 * 179.86005 * 4 3 2 6 6 N 1.46901 * 109.46603 * 269.71234 * 5 4 3 7 7 C 1.46906 * 110.99681 * 189.99997 * 6 5 4 8 8 C 1.53242 * 109.33730 * 187.25246 * 7 6 5 9 9 N 1.47080 * 108.52053 * 306.16696 * 8 7 6 10 10 C 1.34777 * 120.88393 * 231.18783 * 9 8 7 11 11 O 1.21288 * 119.99593 * 0.02562 * 10 9 8 12 12 C 1.50697 * 120.00369 * 180.02562 * 10 9 8 13 13 C 1.52997 * 109.47466 * 180.02562 * 12 10 9 14 14 C 1.53000 * 109.47060 * 180.02562 * 13 12 10 15 15 C 1.53001 * 109.46886 * 180.02562 * 14 13 12 16 16 C 1.50697 * 109.47291 * 179.97438 * 15 14 13 17 17 H 1.08006 * 119.99920 * 359.97438 * 16 15 14 18 18 C 1.37876 * 120.00428 * 179.97438 * 16 15 14 19 19 N 1.31519 * 119.99563 * 359.97438 * 18 16 15 20 20 Si 1.86800 * 120.00432 * 180.02562 * 18 16 15 21 21 H 1.48506 * 109.47116 * 59.99479 * 20 18 16 22 22 H 1.48490 * 109.47381 * 180.02562 * 20 18 16 23 23 H 1.48503 * 109.46756 * 300.00079 * 20 18 16 24 24 C 1.47083 * 118.23602 * 51.46453 * 9 8 7 25 25 C 1.46898 * 111.00098 * 314.29821 * 6 5 4 26 26 N 1.30716 * 108.94330 * 359.58414 * 4 3 2 27 27 N 1.34428 * 125.95822 * 179.67810 * 2 1 3 28 28 H 0.97007 * 126.82522 * 359.97438 * 27 2 1 29 29 H 1.09000 * 109.46852 * 270.30223 * 1 2 3 30 30 H 1.09002 * 109.47299 * 30.30304 * 1 2 3 31 31 H 1.08996 * 109.47375 * 150.30130 * 1 2 3 32 32 H 1.08997 * 109.47406 * 149.71188 * 5 4 3 33 33 H 1.08999 * 109.46949 * 29.70731 * 5 4 3 34 34 H 1.08998 * 109.49162 * 67.29455 * 7 6 5 35 35 H 1.08996 * 109.49528 * 307.21389 * 7 6 5 36 36 H 1.09000 * 109.62497 * 186.46160 * 8 7 6 37 37 H 1.08993 * 109.62991 * 65.88399 * 8 7 6 38 38 H 1.09002 * 109.47120 * 59.99760 * 12 10 9 39 39 H 1.08998 * 109.46862 * 300.00562 * 12 10 9 40 40 H 1.09002 * 109.47153 * 59.99773 * 13 12 10 41 41 H 1.09001 * 109.46832 * 299.99964 * 13 12 10 42 42 H 1.09001 * 109.47194 * 299.99650 * 14 13 12 43 43 H 1.08992 * 109.47399 * 59.99823 * 14 13 12 44 44 H 1.09001 * 109.47109 * 299.99380 * 15 14 13 45 45 H 1.09002 * 109.47508 * 59.99571 * 15 14 13 46 46 H 0.97000 * 119.99425 * 180.02562 * 19 18 16 47 47 H 1.09002 * 109.63083 * 68.24728 * 24 9 8 48 48 H 1.09003 * 109.62649 * 188.82850 * 24 9 8 49 49 H 1.09003 * 109.49537 * 292.71141 * 25 6 5 50 50 H 1.09003 * 109.49317 * 52.76219 * 25 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2753 1.0589 0.0000 4 6 3.5553 0.6887 -0.0029 5 6 4.7373 1.6235 -0.0068 6 7 5.1221 1.9203 -1.3931 7 6 6.4063 2.6320 -1.4420 8 6 6.6830 3.0812 -2.8808 9 7 6.5881 1.9081 -3.7629 10 6 7.5761 1.6136 -4.6310 11 8 8.5602 2.3198 -4.6919 12 6 7.4579 0.4070 -5.5260 13 6 8.7045 0.3012 -6.4067 14 6 8.5842 -0.9236 -7.3158 15 6 9.8311 -1.0297 -8.1961 16 6 9.7130 -2.2363 -9.0911 17 1 8.8364 -2.8650 -9.0371 18 6 10.7239 -2.5379 -9.9789 19 7 11.7911 -1.7721 -10.0449 20 14 10.5772 -4.0332 -11.0888 21 1 9.3740 -3.8955 -11.9484 22 1 11.7874 -4.1363 -11.9430 23 1 10.4535 -5.2570 -10.2567 24 6 5.3836 1.0683 -3.6768 25 6 5.1607 0.6951 -2.2026 26 7 3.6194 -0.6169 0.0042 27 7 2.2964 -1.0881 0.0061 28 1 2.0092 -2.0147 0.0117 29 1 -0.3633 0.0054 1.0277 30 1 -0.3634 0.8873 -0.5185 31 1 -0.3634 -0.8926 -0.5091 32 1 5.5740 1.1534 0.5099 33 1 4.4698 2.5494 0.5022 34 1 7.2034 1.9674 -1.1088 35 1 6.3636 3.5047 -0.7904 36 1 7.6840 3.5076 -2.9451 37 1 5.9451 3.8253 -3.1804 38 1 6.5745 0.5074 -6.1566 39 1 7.3679 -0.4911 -4.9150 40 1 9.5877 0.2005 -5.7758 41 1 8.7949 1.1993 -7.0178 42 1 8.4936 -1.8219 -6.7051 43 1 7.7012 -0.8225 -7.9467 44 1 9.9222 -0.1315 -8.8069 45 1 10.7140 -1.1310 -7.5649 46 1 12.5021 -1.9841 -10.6697 47 1 4.5232 1.6227 -4.0515 48 1 5.5253 0.1633 -4.2676 49 1 5.9752 0.0574 -1.8587 50 1 4.2148 0.1627 -2.1021 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000588370593.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:16:38 Heat of formation + Delta-G solvation = 44.869785 kcal Electronic energy + Delta-G solvation = -28279.774142 eV Core-core repulsion = 24343.391953 eV Total energy + Delta-G solvation = -3936.382189 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 1.40 seconds Orbital eigenvalues (eV) -42.69128 -40.27496 -38.33226 -35.25685 -34.86348 -33.33571 -32.85506 -32.62426 -31.50617 -29.87166 -29.23181 -28.23504 -26.00076 -25.03708 -24.02723 -22.49245 -21.88254 -21.16215 -20.63677 -19.97145 -18.90250 -18.29399 -17.22971 -16.43723 -16.16769 -15.89746 -15.81775 -15.56615 -15.42480 -15.09487 -14.70580 -14.42871 -14.37427 -13.90262 -13.60825 -13.48898 -13.30350 -13.24086 -12.63304 -12.55791 -12.40576 -12.29215 -12.05966 -11.79649 -11.67096 -11.55983 -11.48412 -11.38084 -10.94635 -10.59579 -10.51398 -10.49020 -10.48900 -10.36075 -9.97406 -9.70638 -9.57556 -9.18745 -8.99416 -8.95970 -8.58194 -8.27698 -5.92583 -3.95064 1.05414 2.10796 2.29003 2.73983 2.89468 3.36727 3.38547 3.41004 3.43273 3.59040 4.03860 4.25070 4.43090 4.51087 4.62687 4.67166 4.79104 4.80707 4.85771 4.95283 5.05361 5.09336 5.20029 5.22484 5.26070 5.33447 5.38839 5.42242 5.43090 5.53143 5.60192 5.72175 5.77649 5.88348 5.90223 6.17626 6.29500 6.37460 6.47979 6.52344 6.57663 6.59812 6.87933 7.05397 7.23093 7.36554 7.61241 7.76713 7.93491 8.08998 8.25924 8.50709 9.12348 9.68203 11.18662 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.014943 B = 0.001879 C = 0.001710 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1873.343231 B =14895.821949 C =16368.420513 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.282 3.718 3 N -0.525 5.525 4 C 0.235 3.765 5 C 0.148 3.852 6 N -0.528 5.528 7 C 0.043 3.957 8 C 0.117 3.883 9 N -0.622 5.622 10 C 0.516 3.484 11 O -0.535 6.535 12 C -0.138 4.138 13 C -0.103 4.103 14 C -0.110 4.110 15 C 0.020 3.980 16 C -0.520 4.520 17 H 0.053 0.947 18 C 0.055 3.945 19 N -0.895 5.895 20 Si 0.892 3.108 21 H -0.277 1.277 22 H -0.288 1.288 23 H -0.278 1.278 24 C 0.115 3.885 25 C 0.040 3.960 26 N -0.311 5.311 27 N -0.482 5.482 28 H 0.441 0.559 29 H 0.092 0.908 30 H 0.100 0.900 31 H 0.084 0.916 32 H 0.061 0.939 33 H 0.107 0.893 34 H 0.043 0.957 35 H 0.091 0.909 36 H 0.098 0.902 37 H 0.074 0.926 38 H 0.090 0.910 39 H 0.088 0.912 40 H 0.063 0.937 41 H 0.064 0.936 42 H 0.046 0.954 43 H 0.046 0.954 44 H 0.016 0.984 45 H 0.016 0.984 46 H 0.260 0.740 47 H 0.076 0.924 48 H 0.092 0.908 49 H 0.045 0.955 50 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.287 6.042 25.765 36.603 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.004 3.996 3 N -0.254 5.254 4 C -0.048 4.048 5 C 0.019 3.981 6 N -0.254 5.254 7 C -0.085 4.085 8 C -0.006 4.006 9 N -0.358 5.358 10 C 0.305 3.695 11 O -0.411 6.411 12 C -0.178 4.178 13 C -0.141 4.141 14 C -0.148 4.148 15 C -0.017 4.017 16 C -0.559 4.559 17 H 0.072 0.928 18 C -0.146 4.146 19 N -0.534 5.534 20 Si 0.720 3.280 21 H -0.203 1.203 22 H -0.213 1.213 23 H -0.203 1.203 24 C -0.009 4.009 25 C -0.089 4.089 26 N -0.141 5.141 27 N -0.200 5.200 28 H 0.287 0.713 29 H 0.111 0.889 30 H 0.119 0.881 31 H 0.103 0.897 32 H 0.079 0.921 33 H 0.125 0.875 34 H 0.061 0.939 35 H 0.109 0.891 36 H 0.116 0.884 37 H 0.092 0.908 38 H 0.108 0.892 39 H 0.107 0.893 40 H 0.082 0.918 41 H 0.082 0.918 42 H 0.064 0.936 43 H 0.065 0.935 44 H 0.034 0.966 45 H 0.034 0.966 46 H 0.070 0.930 47 H 0.094 0.906 48 H 0.111 0.889 49 H 0.063 0.937 50 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -24.331 6.743 25.440 35.842 hybrid contribution 0.041 -2.159 -0.195 2.168 sum -24.290 4.584 25.245 35.332 Atomic orbital electron populations 1.20419 0.83478 1.05246 1.04639 1.24484 0.96760 0.82741 0.95605 1.70395 1.01193 1.29286 1.24575 1.23959 0.93396 0.89782 0.97627 1.20370 0.90444 0.96603 0.90723 1.62054 1.30914 1.23309 1.09149 1.22532 0.88992 0.98969 0.98004 1.21624 1.03446 0.87967 0.87561 1.48267 1.19673 1.28382 1.39479 1.21097 0.81626 0.86820 0.79936 1.90692 1.30448 1.51709 1.68283 1.21814 1.02431 0.95435 0.98073 1.21457 0.95080 1.00151 0.97395 1.21647 1.00968 0.94912 0.97237 1.19093 0.91881 0.96814 0.93934 1.21246 1.03834 1.10741 1.20060 0.92842 1.25046 0.95457 0.96725 0.97369 1.69970 1.07993 1.38274 1.37183 0.86669 0.77332 0.83371 0.80659 1.20299 1.21322 1.20328 1.21906 0.87674 0.95513 0.95784 1.22644 1.01863 0.90962 0.93384 1.78090 0.96903 1.12357 1.26771 1.48024 1.04231 1.10207 1.57542 0.71325 0.88932 0.88138 0.89746 0.92131 0.87533 0.93857 0.89058 0.88401 0.90793 0.89198 0.89338 0.91841 0.91769 0.93557 0.93493 0.96559 0.96595 0.93014 0.90611 0.88934 0.93709 0.89914 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.15 10.51 36.01 0.38 0.23 16 2 C 0.28 1.80 8.24 -155.70 -1.28 0.52 16 3 N -0.53 -4.96 11.19 -8.16 -0.09 -5.05 16 4 C 0.24 2.24 5.93 -156.85 -0.93 1.31 16 5 C 0.15 1.21 5.90 -4.98 -0.03 1.18 16 6 N -0.53 -4.70 4.77 -235.46 -1.12 -5.82 16 7 C 0.04 0.36 5.58 -3.70 -0.02 0.34 16 8 C 0.12 1.21 6.60 -3.60 -0.02 1.18 16 9 N -0.62 -7.40 3.00 -172.18 -0.52 -7.92 16 10 C 0.52 7.79 7.71 -10.99 -0.08 7.71 16 11 O -0.54 -10.15 15.44 5.55 0.09 -10.06 16 12 C -0.14 -1.97 4.06 -27.89 -0.11 -2.08 16 13 C -0.10 -1.92 4.50 -26.73 -0.12 -2.04 16 14 C -0.11 -2.33 5.15 -26.73 -0.14 -2.47 16 15 C 0.02 0.54 4.97 -27.88 -0.14 0.40 16 16 C -0.52 -15.22 9.11 -34.44 -0.31 -15.53 16 17 H 0.05 1.50 7.74 -52.48 -0.41 1.09 16 18 C 0.05 1.63 5.46 -17.82 -0.10 1.53 16 19 N -0.89 -27.81 13.29 55.43 0.74 -27.07 16 20 Si 0.89 22.14 29.54 -169.99 -5.02 17.12 16 21 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 22 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 23 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 24 C 0.11 1.10 6.53 -3.36 -0.02 1.08 16 25 C 0.04 0.38 5.15 -3.46 -0.02 0.36 16 26 N -0.31 -2.94 11.82 32.42 0.38 -2.56 16 27 N -0.48 -3.01 7.45 32.62 0.24 -2.76 16 28 H 0.44 1.24 8.96 -182.33 -1.63 -0.40 16 29 H 0.09 0.06 8.14 -51.93 -0.42 -0.36 16 30 H 0.10 0.21 8.14 -51.93 -0.42 -0.21 16 31 H 0.08 -0.02 8.14 -51.93 -0.42 -0.44 16 32 H 0.06 0.46 8.08 -51.93 -0.42 0.04 16 33 H 0.11 0.75 8.14 -51.93 -0.42 0.32 16 34 H 0.04 0.40 8.14 -51.93 -0.42 -0.03 16 35 H 0.09 0.57 8.11 -51.93 -0.42 0.15 16 36 H 0.10 1.13 7.06 -51.93 -0.37 0.76 16 37 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 38 H 0.09 1.13 7.99 -51.93 -0.41 0.71 16 39 H 0.09 1.12 7.67 -51.93 -0.40 0.72 16 40 H 0.06 1.26 8.10 -51.93 -0.42 0.84 16 41 H 0.06 1.27 8.10 -51.93 -0.42 0.85 16 42 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 43 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 44 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 45 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 46 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 47 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 48 H 0.09 0.81 6.02 -51.93 -0.31 0.50 16 49 H 0.04 0.47 8.14 -51.93 -0.42 0.05 16 50 H 0.08 0.83 5.87 -51.93 -0.31 0.53 16 LS Contribution 402.92 15.07 6.07 6.07 Total: -1.00 -37.64 402.92 -11.91 -49.56 By element: Atomic # 1 Polarization: 4.50 SS G_CDS: -9.73 Total: -5.23 kcal Atomic # 6 Polarization: -3.33 SS G_CDS: -2.95 Total: -6.28 kcal Atomic # 7 Polarization: -50.81 SS G_CDS: -0.37 Total: -51.18 kcal Atomic # 8 Polarization: -10.15 SS G_CDS: 0.09 Total: -10.06 kcal Atomic # 14 Polarization: 22.14 SS G_CDS: -5.02 Total: 17.12 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -37.64 -11.91 -49.56 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588370593.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.426 kcal (2) G-P(sol) polarization free energy of solvation -37.643 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.783 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.914 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.556 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.870 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.41 seconds