Wall clock time and date at job start Tue Mar 31 2020 19:16:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.30827 * 125.96367 * 2 1 4 4 C 1.33245 * 109.83052 * 180.13075 * 3 2 1 5 5 C 1.50697 * 125.52762 * 179.86005 * 4 3 2 6 6 N 1.46901 * 109.46603 * 269.71234 * 5 4 3 7 7 C 1.46906 * 110.99681 * 189.99997 * 6 5 4 8 8 C 1.53242 * 109.33730 * 187.25246 * 7 6 5 9 9 N 1.47080 * 108.52053 * 306.16696 * 8 7 6 10 10 C 1.34777 * 120.88393 * 231.18783 * 9 8 7 11 11 O 1.21288 * 119.99593 * 0.02562 * 10 9 8 12 12 C 1.50697 * 120.00369 * 180.02562 * 10 9 8 13 13 C 1.52997 * 109.47466 * 180.02562 * 12 10 9 14 14 C 1.53000 * 109.47060 * 180.02562 * 13 12 10 15 15 C 1.53001 * 109.46886 * 180.02562 * 14 13 12 16 16 C 1.50697 * 109.47291 * 179.97438 * 15 14 13 17 17 H 1.08006 * 119.99920 * 359.97438 * 16 15 14 18 18 C 1.37876 * 120.00428 * 179.97438 * 16 15 14 19 19 N 1.31519 * 119.99563 * 359.97438 * 18 16 15 20 20 Si 1.86800 * 120.00432 * 180.02562 * 18 16 15 21 21 H 1.48506 * 109.47116 * 59.99479 * 20 18 16 22 22 H 1.48490 * 109.47381 * 180.02562 * 20 18 16 23 23 H 1.48503 * 109.46756 * 300.00079 * 20 18 16 24 24 C 1.47083 * 118.23602 * 51.46453 * 9 8 7 25 25 C 1.46898 * 111.00098 * 314.29821 * 6 5 4 26 26 N 1.30716 * 108.94330 * 359.58414 * 4 3 2 27 27 N 1.34428 * 125.95822 * 179.67810 * 2 1 3 28 28 H 0.97007 * 126.82522 * 359.97438 * 27 2 1 29 29 H 1.09000 * 109.46852 * 270.30223 * 1 2 3 30 30 H 1.09002 * 109.47299 * 30.30304 * 1 2 3 31 31 H 1.08996 * 109.47375 * 150.30130 * 1 2 3 32 32 H 1.08997 * 109.47406 * 149.71188 * 5 4 3 33 33 H 1.08999 * 109.46949 * 29.70731 * 5 4 3 34 34 H 1.08998 * 109.49162 * 67.29455 * 7 6 5 35 35 H 1.08996 * 109.49528 * 307.21389 * 7 6 5 36 36 H 1.09000 * 109.62497 * 186.46160 * 8 7 6 37 37 H 1.08993 * 109.62991 * 65.88399 * 8 7 6 38 38 H 1.09002 * 109.47120 * 59.99760 * 12 10 9 39 39 H 1.08998 * 109.46862 * 300.00562 * 12 10 9 40 40 H 1.09002 * 109.47153 * 59.99773 * 13 12 10 41 41 H 1.09001 * 109.46832 * 299.99964 * 13 12 10 42 42 H 1.09001 * 109.47194 * 299.99650 * 14 13 12 43 43 H 1.08992 * 109.47399 * 59.99823 * 14 13 12 44 44 H 1.09001 * 109.47109 * 299.99380 * 15 14 13 45 45 H 1.09002 * 109.47508 * 59.99571 * 15 14 13 46 46 H 0.97000 * 119.99425 * 180.02562 * 19 18 16 47 47 H 1.09002 * 109.63083 * 68.24728 * 24 9 8 48 48 H 1.09003 * 109.62649 * 188.82850 * 24 9 8 49 49 H 1.09003 * 109.49537 * 292.71141 * 25 6 5 50 50 H 1.09003 * 109.49317 * 52.76219 * 25 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2753 1.0589 0.0000 4 6 3.5553 0.6887 -0.0029 5 6 4.7373 1.6235 -0.0068 6 7 5.1221 1.9203 -1.3931 7 6 6.4063 2.6320 -1.4420 8 6 6.6830 3.0812 -2.8808 9 7 6.5881 1.9081 -3.7629 10 6 7.5761 1.6136 -4.6310 11 8 8.5602 2.3198 -4.6919 12 6 7.4579 0.4070 -5.5260 13 6 8.7045 0.3012 -6.4067 14 6 8.5842 -0.9236 -7.3158 15 6 9.8311 -1.0297 -8.1961 16 6 9.7130 -2.2363 -9.0911 17 1 8.8364 -2.8650 -9.0371 18 6 10.7239 -2.5379 -9.9789 19 7 11.7911 -1.7721 -10.0449 20 14 10.5772 -4.0332 -11.0888 21 1 9.3740 -3.8955 -11.9484 22 1 11.7874 -4.1363 -11.9430 23 1 10.4535 -5.2570 -10.2567 24 6 5.3836 1.0683 -3.6768 25 6 5.1607 0.6951 -2.2026 26 7 3.6194 -0.6169 0.0042 27 7 2.2964 -1.0881 0.0061 28 1 2.0092 -2.0147 0.0117 29 1 -0.3633 0.0054 1.0277 30 1 -0.3634 0.8873 -0.5185 31 1 -0.3634 -0.8926 -0.5091 32 1 5.5740 1.1534 0.5099 33 1 4.4698 2.5494 0.5022 34 1 7.2034 1.9674 -1.1088 35 1 6.3636 3.5047 -0.7904 36 1 7.6840 3.5076 -2.9451 37 1 5.9451 3.8253 -3.1804 38 1 6.5745 0.5074 -6.1566 39 1 7.3679 -0.4911 -4.9150 40 1 9.5877 0.2005 -5.7758 41 1 8.7949 1.1993 -7.0178 42 1 8.4936 -1.8219 -6.7051 43 1 7.7012 -0.8225 -7.9467 44 1 9.9222 -0.1315 -8.8069 45 1 10.7140 -1.1310 -7.5649 46 1 12.5021 -1.9841 -10.6697 47 1 4.5232 1.6227 -4.0515 48 1 5.5253 0.1633 -4.2676 49 1 5.9752 0.0574 -1.8587 50 1 4.2148 0.1627 -2.1021 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000588370593.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:16:37 Heat of formation + Delta-G solvation = 18.446267 kcal Electronic energy + Delta-G solvation = -28280.919951 eV Core-core repulsion = 24343.391953 eV Total energy + Delta-G solvation = -3937.527998 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -43.23025 -41.29450 -39.26342 -36.68415 -36.08049 -34.66027 -33.87496 -33.36377 -32.43612 -31.36381 -30.02984 -28.79913 -27.55204 -26.06892 -24.95805 -24.03923 -22.41094 -22.20870 -21.67644 -21.26504 -19.87431 -18.81924 -18.45398 -18.17417 -17.19683 -17.01494 -16.84715 -16.48433 -16.28765 -16.06066 -15.87504 -15.69033 -15.14240 -14.86430 -14.54595 -14.50348 -14.25431 -13.76589 -13.64642 -13.62828 -13.59039 -13.34736 -13.15372 -13.06091 -12.80015 -12.72040 -12.48746 -12.39577 -12.31056 -12.27175 -12.15516 -12.10429 -11.39383 -11.34331 -11.16158 -11.15231 -11.07539 -10.75073 -10.54460 -10.51814 -9.87987 -9.38290 -8.18435 -6.30815 0.53221 1.39829 1.44112 1.51998 1.57379 1.68070 1.72771 1.94115 2.41866 2.82929 3.00815 3.13889 3.48689 3.55320 3.81184 3.84375 3.94846 4.01105 4.09486 4.15330 4.19397 4.26472 4.41942 4.43311 4.54886 4.58805 4.64200 4.68929 4.72787 4.77074 4.77930 4.81372 4.81946 4.87103 5.00734 5.08181 5.16764 5.21519 5.31102 5.32351 5.35146 5.45542 5.55702 5.77221 5.78710 5.86714 5.87434 6.19206 6.24972 6.32829 6.87059 7.07488 7.12845 7.38523 8.93512 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.014943 B = 0.001879 C = 0.001710 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1873.343231 B =14895.821949 C =16368.420513 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.287 3.713 3 N -0.559 5.559 4 C 0.225 3.775 5 C 0.150 3.850 6 N -0.530 5.530 7 C 0.051 3.949 8 C 0.114 3.886 9 N -0.615 5.615 10 C 0.513 3.487 11 O -0.585 6.585 12 C -0.128 4.128 13 C -0.094 4.094 14 C -0.095 4.095 15 C 0.019 3.981 16 C -0.543 4.543 17 H 0.066 0.934 18 C -0.007 4.007 19 N -0.937 5.937 20 Si 0.971 3.029 21 H -0.264 1.264 22 H -0.285 1.285 23 H -0.265 1.265 24 C 0.113 3.887 25 C 0.049 3.951 26 N -0.340 5.340 27 N -0.474 5.474 28 H 0.455 0.545 29 H 0.109 0.891 30 H 0.099 0.901 31 H 0.110 0.890 32 H 0.062 0.938 33 H 0.117 0.883 34 H 0.034 0.966 35 H 0.116 0.884 36 H 0.082 0.918 37 H 0.085 0.915 38 H 0.117 0.883 39 H 0.113 0.887 40 H 0.042 0.958 41 H 0.044 0.956 42 H 0.059 0.941 43 H 0.061 0.939 44 H -0.015 1.015 45 H -0.016 1.016 46 H 0.263 0.737 47 H 0.086 0.914 48 H 0.105 0.895 49 H 0.033 0.967 50 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.475 4.546 26.328 39.047 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.009 3.991 3 N -0.290 5.290 4 C -0.058 4.058 5 C 0.020 3.980 6 N -0.256 5.256 7 C -0.077 4.077 8 C -0.009 4.009 9 N -0.348 5.348 10 C 0.303 3.697 11 O -0.465 6.465 12 C -0.167 4.167 13 C -0.132 4.132 14 C -0.133 4.133 15 C -0.019 4.019 16 C -0.581 4.581 17 H 0.084 0.916 18 C -0.205 4.205 19 N -0.577 5.577 20 Si 0.794 3.206 21 H -0.189 1.189 22 H -0.210 1.210 23 H -0.190 1.190 24 C -0.009 4.009 25 C -0.080 4.080 26 N -0.171 5.171 27 N -0.194 5.194 28 H 0.303 0.697 29 H 0.127 0.873 30 H 0.118 0.882 31 H 0.128 0.872 32 H 0.080 0.920 33 H 0.135 0.865 34 H 0.052 0.948 35 H 0.134 0.866 36 H 0.100 0.900 37 H 0.103 0.897 38 H 0.135 0.865 39 H 0.131 0.869 40 H 0.061 0.939 41 H 0.063 0.937 42 H 0.078 0.922 43 H 0.080 0.920 44 H 0.004 0.996 45 H 0.003 0.997 46 H 0.071 0.929 47 H 0.104 0.896 48 H 0.124 0.876 49 H 0.051 0.949 50 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -27.587 5.221 26.040 38.293 hybrid contribution 0.966 -1.668 -0.307 1.952 sum -26.621 3.552 25.733 37.195 Atomic orbital electron populations 1.20638 0.80363 1.06480 1.06008 1.25239 0.98216 0.82014 0.93592 1.70388 1.01483 1.30906 1.26213 1.24123 0.93858 0.89968 0.97847 1.20403 0.90327 0.97045 0.90200 1.62064 1.30844 1.23005 1.09721 1.22482 0.88562 0.99683 0.96954 1.21736 1.02941 0.87710 0.88500 1.48305 1.19448 1.28692 1.38397 1.21185 0.81566 0.86614 0.80362 1.90679 1.32513 1.53333 1.69969 1.21694 1.00803 0.96267 0.97945 1.21240 0.96808 0.98063 0.97115 1.21444 0.98277 0.96593 0.96943 1.19055 0.93681 0.95156 0.93963 1.21716 1.04408 1.11427 1.20518 0.91588 1.26109 0.94907 1.00296 0.99155 1.70133 1.08961 1.40461 1.38156 0.85423 0.77708 0.79031 0.78399 1.18876 1.21041 1.18950 1.22097 0.86783 0.95801 0.96239 1.22511 1.01175 0.91024 0.93244 1.77997 0.98807 1.12567 1.27743 1.47975 1.03310 1.11093 1.57070 0.69671 0.87315 0.88191 0.87180 0.91958 0.86491 0.94772 0.86608 0.89984 0.89705 0.86522 0.86921 0.93912 0.93728 0.92183 0.92006 0.99635 0.99729 0.92868 0.89591 0.87640 0.94886 0.90184 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.09 10.51 71.24 0.75 0.66 16 2 C 0.29 3.15 8.24 138.23 1.14 4.29 16 3 N -0.56 -9.89 11.19 -179.73 -2.01 -11.90 16 4 C 0.22 4.08 5.93 138.63 0.82 4.90 16 5 C 0.15 2.28 5.90 85.56 0.50 2.79 16 6 N -0.53 -8.72 4.77 -898.86 -4.29 -13.01 16 7 C 0.05 0.80 5.58 86.38 0.48 1.28 16 8 C 0.11 2.26 6.60 86.35 0.57 2.83 16 9 N -0.61 -13.95 3.00 -817.03 -2.45 -16.41 16 10 C 0.51 15.30 7.71 87.66 0.68 15.98 16 11 O -0.58 -22.86 15.44 -3.05 -0.05 -22.91 16 12 C -0.13 -3.46 4.06 29.85 0.12 -3.34 16 13 C -0.09 -3.56 4.50 30.59 0.14 -3.42 16 14 C -0.10 -4.00 5.15 30.59 0.16 -3.84 16 15 C 0.02 1.04 4.97 29.85 0.15 1.19 16 16 C -0.54 -31.91 9.11 25.60 0.23 -31.68 16 17 H 0.07 3.63 7.74 -2.91 -0.02 3.60 16 18 C -0.01 -0.44 5.46 84.65 0.46 0.02 16 19 N -0.94 -59.57 13.29 21.45 0.28 -59.28 16 20 Si 0.97 45.22 29.54 68.60 2.03 47.25 16 21 H -0.26 -11.68 7.11 99.48 0.71 -10.97 16 22 H -0.28 -13.04 7.11 99.48 0.71 -12.34 16 23 H -0.26 -11.72 7.11 99.48 0.71 -11.02 16 24 C 0.11 1.94 6.53 86.50 0.57 2.51 16 25 C 0.05 0.87 5.15 86.54 0.45 1.31 16 26 N -0.34 -6.13 11.82 -51.33 -0.61 -6.73 16 27 N -0.47 -5.18 7.45 -50.71 -0.38 -5.56 16 28 H 0.45 1.73 8.96 -213.09 -1.91 -0.18 16 29 H 0.11 -0.17 8.14 -2.39 -0.02 -0.19 16 30 H 0.10 0.19 8.14 -2.39 -0.02 0.17 16 31 H 0.11 -0.42 8.14 -2.39 -0.02 -0.44 16 32 H 0.06 0.91 8.08 -2.39 -0.02 0.89 16 33 H 0.12 1.49 8.14 -2.39 -0.02 1.47 16 34 H 0.03 0.61 8.14 -2.39 -0.02 0.59 16 35 H 0.12 1.25 8.11 -2.39 -0.02 1.23 16 36 H 0.08 1.93 7.06 -2.39 -0.02 1.91 16 37 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16 38 H 0.12 2.58 7.99 -2.39 -0.02 2.56 16 39 H 0.11 2.55 7.67 -2.39 -0.02 2.53 16 40 H 0.04 1.76 8.10 -2.39 -0.02 1.74 16 41 H 0.04 1.83 8.10 -2.39 -0.02 1.81 16 42 H 0.06 2.36 8.14 -2.39 -0.02 2.34 16 43 H 0.06 2.41 8.14 -2.39 -0.02 2.40 16 44 H -0.01 -0.90 8.14 -2.39 -0.02 -0.92 16 45 H -0.02 -0.96 8.14 -2.39 -0.02 -0.98 16 46 H 0.26 15.67 8.31 -92.71 -0.77 14.90 16 47 H 0.09 1.37 8.14 -2.39 -0.02 1.35 16 48 H 0.11 1.54 6.02 -2.39 -0.01 1.52 16 49 H 0.03 0.66 8.14 -2.39 -0.02 0.64 16 50 H 0.08 1.50 5.87 -2.39 -0.01 1.48 16 Total: -1.00 -84.23 402.92 -1.24 -85.46 By element: Atomic # 1 Polarization: 8.58 SS G_CDS: -0.98 Total: 7.60 kcal Atomic # 6 Polarization: -11.72 SS G_CDS: 7.21 Total: -4.51 kcal Atomic # 7 Polarization: -103.44 SS G_CDS: -9.45 Total: -112.90 kcal Atomic # 8 Polarization: -22.86 SS G_CDS: -0.05 Total: -22.91 kcal Atomic # 14 Polarization: 45.22 SS G_CDS: 2.03 Total: 47.25 kcal Total: -84.23 -1.24 -85.46 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588370593.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.910 kcal (2) G-P(sol) polarization free energy of solvation -84.226 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.684 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.238 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.464 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.446 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds