Wall clock time and date at job start Tue Mar 31 2020 20:20:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50699 * 109.47335 * 2 1 4 4 N 1.30523 * 126.34411 * 270.04403 * 3 2 1 5 5 N 1.28595 * 109.66889 * 179.97438 * 4 3 2 6 6 C 1.30523 * 109.67494 * 359.72235 * 5 4 3 7 7 N 1.35487 * 126.34539 * 89.99704 * 3 2 1 8 8 C 1.46496 * 126.98443 * 0.03793 * 7 3 2 9 9 C 1.52995 * 109.47249 * 84.99745 * 8 7 3 10 10 N 1.46506 * 109.47245 * 180.02562 * 9 8 7 11 11 C 1.34781 * 119.99815 * 179.97438 * 10 9 8 12 12 O 1.21586 * 119.99986 * 355.01929 * 11 10 9 13 13 N 1.34774 * 119.99809 * 175.01670 * 11 10 9 14 14 C 1.46933 * 120.63130 * 4.94534 * 13 11 10 15 15 C 1.53620 * 108.54500 * 126.36896 * 14 13 11 16 16 C 1.53031 * 109.24459 * 54.85451 * 15 14 13 17 17 C 1.53004 * 109.46360 * 178.49243 * 16 15 14 18 18 C 1.50695 * 109.46593 * 295.06865 * 17 16 15 19 19 H 1.07996 * 120.00556 * 0.02562 * 18 17 16 20 20 C 1.37882 * 119.99817 * 179.97438 * 18 17 16 21 21 N 1.31521 * 119.99771 * 359.97438 * 20 18 17 22 22 Si 1.86802 * 120.00166 * 180.02562 * 20 18 17 23 23 H 1.48500 * 109.47097 * 59.99875 * 22 20 18 24 24 H 1.48505 * 109.46980 * 179.97438 * 22 20 18 25 25 H 1.48502 * 109.47036 * 299.99861 * 22 20 18 26 26 C 1.53043 * 109.54092 * 298.51135 * 16 15 14 27 27 C 1.46927 * 120.63363 * 185.22218 * 13 11 10 28 28 H 1.08996 * 109.47008 * 300.00384 * 1 2 3 29 29 H 1.09007 * 109.46811 * 60.00118 * 1 2 3 30 30 H 1.08997 * 109.47077 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.47212 * 239.99281 * 2 1 3 32 32 H 1.09007 * 109.46811 * 119.99882 * 2 1 3 33 33 H 1.08004 * 126.34330 * 180.30428 * 6 5 4 34 34 H 1.08999 * 109.47170 * 324.99802 * 8 7 3 35 35 H 1.08999 * 109.47485 * 205.00103 * 8 7 3 36 36 H 1.09005 * 109.47317 * 60.00571 * 9 8 7 37 37 H 1.08996 * 109.47410 * 300.00092 * 9 8 7 38 38 H 0.96994 * 120.00216 * 0.02562 * 10 9 8 39 39 H 1.08996 * 109.58505 * 246.20162 * 14 13 11 40 40 H 1.09002 * 109.58175 * 6.62241 * 14 13 11 41 41 H 1.09006 * 109.63077 * 294.86076 * 15 14 13 42 42 H 1.09001 * 109.46107 * 174.74320 * 15 14 13 43 43 H 1.09000 * 109.45303 * 58.52567 * 16 15 14 44 44 H 1.08995 * 109.47007 * 55.06902 * 17 16 15 45 45 H 1.08996 * 109.47099 * 175.06943 * 17 16 15 46 46 H 0.96996 * 119.99444 * 179.97438 * 21 20 18 47 47 H 1.09001 * 109.49643 * 301.41768 * 26 16 15 48 48 H 1.09000 * 109.52739 * 181.33155 * 26 16 15 49 49 H 1.09003 * 109.58377 * 353.37314 * 27 13 11 50 50 H 1.08997 * 109.58807 * 113.65109 * 27 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.2895 2.1503 -1.0513 5 7 2.6999 3.3118 -0.6823 6 6 2.7177 3.3780 0.6211 7 7 2.3000 2.1778 1.0913 8 6 2.1606 1.7814 2.4947 9 6 3.4269 1.0515 2.9467 10 7 3.2872 0.6545 4.3500 11 6 4.2869 -0.0075 4.9658 12 8 5.2658 -0.3548 4.3338 13 7 4.2013 -0.2843 6.2820 14 6 2.9804 0.0321 7.0357 15 6 2.5054 -1.2406 7.7530 16 6 3.6471 -1.7927 8.6096 17 6 3.1677 -3.0395 9.3557 18 6 2.0849 -2.6559 10.3310 19 1 1.7698 -1.6259 10.4105 20 6 1.4957 -3.6200 11.1212 21 7 1.8783 -4.8745 11.0234 22 14 0.1529 -3.1446 12.3298 23 1 -0.9855 -2.5402 11.5922 24 1 -0.3132 -4.3549 13.0531 25 1 0.6896 -2.1609 13.3042 26 6 4.8301 -2.1598 7.7108 27 6 5.3294 -0.9026 6.9919 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5139 -0.8901 30 1 -0.3633 -1.0276 -0.0005 31 1 1.8934 -0.5140 -0.8899 32 1 1.8933 -0.5139 0.8901 33 1 3.0127 4.2307 1.2147 34 1 1.3017 1.1189 2.6015 35 1 2.0135 2.6689 3.1101 36 1 4.2859 1.7140 2.8400 37 1 3.5740 0.1639 2.3313 38 1 2.4751 0.8673 4.8357 39 1 3.1948 0.8096 7.7689 40 1 2.2067 0.3771 6.3498 41 1 2.2094 -1.9874 7.0162 42 1 1.6545 -1.0019 8.3910 43 1 3.9592 -1.0363 9.3297 44 1 2.7736 -3.7616 8.6407 45 1 4.0036 -3.4830 9.8967 46 1 1.4640 -5.5526 11.5796 47 1 4.5122 -2.8979 6.9744 48 1 5.6342 -2.5750 8.3184 49 1 6.1060 -1.1746 6.2770 50 1 5.7331 -0.1988 7.7197 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000591949070.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:20:10 Heat of formation + Delta-G solvation = 15.298331 kcal Electronic energy + Delta-G solvation = -28783.436403 eV Core-core repulsion = 24845.771900 eV Total energy + Delta-G solvation = -3937.664503 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -44.16003 -41.48095 -38.96401 -37.36196 -35.72195 -35.39899 -34.77255 -33.89188 -32.02040 -30.59964 -30.37011 -29.41985 -26.41276 -25.41682 -24.57412 -24.13782 -23.38842 -23.18343 -21.68789 -21.37517 -20.51677 -19.17168 -18.37647 -18.07405 -17.40740 -17.01288 -16.90792 -16.52122 -16.29044 -15.86551 -15.63342 -15.27982 -15.17748 -15.10005 -14.80343 -14.68398 -14.44363 -14.23256 -13.92522 -13.64118 -13.47805 -13.31802 -12.94725 -12.88321 -12.75121 -12.68657 -12.46394 -12.39678 -12.31115 -12.15579 -12.13048 -11.74591 -11.45105 -11.31349 -11.29528 -11.22537 -10.96101 -10.82075 -10.49177 -10.34141 -10.24348 -9.46215 -8.13818 -6.23507 0.77965 1.23608 1.43980 1.46017 1.53458 1.82711 1.86038 2.07994 2.44827 2.89067 3.20055 3.31457 3.50912 3.57091 3.74668 3.95292 3.98777 4.03686 4.10531 4.17666 4.23374 4.27325 4.33124 4.43976 4.45680 4.54062 4.55467 4.67945 4.73521 4.84042 4.86133 4.92121 4.98059 4.98696 5.10990 5.12295 5.15874 5.29337 5.31581 5.34398 5.36621 5.42395 5.57580 5.61292 5.84546 5.90394 5.92320 5.96082 6.31182 6.90748 6.93966 7.45441 7.49397 7.71338 8.97858 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.016250 B = 0.002099 C = 0.001975 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1722.629126 B =13333.325528 C =14172.359297 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.041 4.041 3 C 0.184 3.816 4 N -0.344 5.344 5 N -0.349 5.349 6 C 0.165 3.835 7 N -0.467 5.467 8 C 0.101 3.899 9 C 0.130 3.870 10 N -0.728 5.728 11 C 0.706 3.294 12 O -0.637 6.637 13 N -0.622 5.622 14 C 0.118 3.882 15 C -0.114 4.114 16 C -0.073 4.073 17 C 0.031 3.969 18 C -0.524 4.524 19 H 0.070 0.930 20 C -0.006 4.006 21 N -0.939 5.939 22 Si 0.960 3.040 23 H -0.263 1.263 24 H -0.293 1.293 25 H -0.267 1.267 26 C -0.123 4.123 27 C 0.137 3.863 28 H 0.062 0.938 29 H 0.049 0.951 30 H 0.084 0.916 31 H 0.097 0.903 32 H 0.098 0.902 33 H 0.259 0.741 34 H 0.125 0.875 35 H 0.144 0.856 36 H 0.063 0.937 37 H 0.055 0.945 38 H 0.415 0.585 39 H 0.088 0.912 40 H 0.106 0.894 41 H 0.044 0.956 42 H 0.078 0.922 43 H 0.065 0.935 44 H -0.017 1.017 45 H -0.017 1.017 46 H 0.260 0.740 47 H 0.043 0.957 48 H 0.068 0.932 49 H 0.077 0.923 50 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.069 16.644 -14.790 22.476 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.081 4.081 3 C -0.085 4.085 4 N -0.183 5.183 5 N -0.187 5.187 6 C -0.123 4.123 7 N -0.158 5.158 8 C -0.022 4.022 9 C 0.004 3.996 10 N -0.389 5.389 11 C 0.407 3.593 12 O -0.519 6.519 13 N -0.358 5.358 14 C -0.004 4.004 15 C -0.152 4.152 16 C -0.092 4.092 17 C -0.006 4.006 18 C -0.562 4.562 19 H 0.089 0.911 20 C -0.203 4.203 21 N -0.580 5.580 22 Si 0.785 3.215 23 H -0.187 1.187 24 H -0.219 1.219 25 H -0.192 1.192 26 C -0.161 4.161 27 C 0.014 3.986 28 H 0.082 0.918 29 H 0.068 0.932 30 H 0.103 0.897 31 H 0.115 0.885 32 H 0.117 0.883 33 H 0.274 0.726 34 H 0.144 0.856 35 H 0.162 0.838 36 H 0.082 0.918 37 H 0.074 0.926 38 H 0.255 0.745 39 H 0.106 0.894 40 H 0.124 0.876 41 H 0.063 0.937 42 H 0.096 0.904 43 H 0.083 0.917 44 H 0.001 0.999 45 H 0.001 0.999 46 H 0.068 0.932 47 H 0.062 0.938 48 H 0.087 0.913 49 H 0.095 0.905 50 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -2.249 16.692 -16.634 23.673 hybrid contribution -0.749 -0.898 2.249 2.535 sum -2.998 15.794 -14.385 21.573 Atomic orbital electron populations 1.21714 0.92341 1.03687 1.02273 1.20198 0.97546 0.84896 1.05463 1.25385 1.01787 0.98508 0.82817 1.74182 1.18349 0.99864 1.25876 1.74162 1.19475 1.13625 1.11405 1.27238 1.00829 0.91396 0.92839 1.46240 1.49115 1.11789 1.08650 1.22229 0.98531 1.04207 0.77229 1.21313 0.97921 0.99170 0.81189 1.44753 1.19680 1.61891 1.12561 1.15910 0.83035 0.78746 0.81606 1.90895 1.34967 1.60516 1.65473 1.47365 1.17588 1.64134 1.06750 1.21960 0.85416 0.97047 0.95988 1.21862 0.98429 0.96701 0.98211 1.21031 0.94525 0.97712 0.95899 1.19030 0.94478 0.93233 0.93842 1.21645 1.19628 0.94530 1.20398 0.91143 1.25998 0.99816 0.94952 0.99518 1.70118 1.44365 1.01935 1.41544 0.85570 0.79487 0.77389 0.79009 1.18729 1.21886 1.19210 1.21925 0.98661 0.97221 0.98306 1.21424 0.87860 0.93990 0.95333 0.91844 0.93162 0.89676 0.88478 0.88325 0.72563 0.85648 0.83779 0.91828 0.92640 0.74521 0.89395 0.87615 0.93706 0.90377 0.91699 0.99889 0.99871 0.93163 0.93843 0.91303 0.90465 0.89951 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.30 9.90 71.98 0.71 -0.58 16 2 C -0.04 -0.48 6.19 29.85 0.18 -0.30 16 3 C 0.18 3.17 7.28 137.98 1.01 4.18 16 4 N -0.34 -8.67 12.21 -50.16 -0.61 -9.28 16 5 N -0.35 -8.36 12.21 -59.98 -0.73 -9.09 16 6 C 0.17 2.29 12.74 180.11 2.29 4.58 16 7 N -0.47 -5.46 2.75 -518.72 -1.42 -6.89 16 8 C 0.10 0.43 5.93 86.38 0.51 0.94 16 9 C 0.13 1.52 6.00 86.38 0.52 2.03 16 10 N -0.73 -9.85 5.47 -478.53 -2.62 -12.46 16 11 C 0.71 17.08 8.30 179.05 1.49 18.57 16 12 O -0.64 -21.31 15.77 -3.99 -0.06 -21.38 16 13 N -0.62 -14.49 2.97 -836.05 -2.48 -16.97 16 14 C 0.12 2.19 6.42 86.51 0.56 2.74 16 15 C -0.11 -3.26 5.21 30.81 0.16 -3.10 16 16 C -0.07 -2.58 2.10 -10.77 -0.02 -2.60 16 17 C 0.03 1.53 4.45 29.85 0.13 1.66 16 18 C -0.52 -27.15 8.39 25.60 0.21 -26.94 16 19 H 0.07 3.36 7.05 -2.91 -0.02 3.34 16 20 C -0.01 -0.32 5.46 84.65 0.46 0.14 16 21 N -0.94 -55.66 13.29 21.45 0.28 -55.37 16 22 Si 0.96 41.68 29.54 68.60 2.03 43.70 16 23 H -0.26 -10.69 7.11 99.48 0.71 -9.98 16 24 H -0.29 -12.86 7.11 99.48 0.71 -12.15 16 25 H -0.27 -11.09 7.11 99.48 0.71 -10.38 16 26 C -0.12 -3.88 5.36 30.67 0.16 -3.71 16 27 C 0.14 3.59 6.44 86.36 0.56 4.15 16 28 H 0.06 0.46 8.14 -2.39 -0.02 0.44 16 29 H 0.05 0.61 8.14 -2.38 -0.02 0.59 16 30 H 0.08 0.57 8.14 -2.39 -0.02 0.55 16 31 H 0.10 1.21 8.14 -2.39 -0.02 1.19 16 32 H 0.10 0.86 7.62 -2.38 -0.02 0.85 16 33 H 0.26 0.99 8.06 -2.91 -0.02 0.97 16 34 H 0.13 0.12 8.02 -2.39 -0.02 0.10 16 35 H 0.14 -0.31 8.14 -2.39 -0.02 -0.33 16 36 H 0.06 0.92 8.14 -2.38 -0.02 0.90 16 37 H 0.06 0.90 7.82 -2.39 -0.02 0.88 16 38 H 0.41 2.80 5.96 -92.71 -0.55 2.25 16 39 H 0.09 1.40 8.14 -2.39 -0.02 1.38 16 40 H 0.11 1.12 5.64 -2.39 -0.01 1.10 16 41 H 0.04 1.40 8.14 -2.38 -0.02 1.39 16 42 H 0.08 2.36 6.91 -2.39 -0.02 2.34 16 43 H 0.06 2.22 8.14 -2.39 -0.02 2.20 16 44 H -0.02 -0.95 8.14 -2.39 -0.02 -0.97 16 45 H -0.02 -0.94 8.14 -2.39 -0.02 -0.96 16 46 H 0.26 14.65 8.31 -92.71 -0.77 13.88 16 47 H 0.04 1.51 8.14 -2.39 -0.02 1.49 16 48 H 0.07 2.18 8.14 -2.39 -0.02 2.16 16 49 H 0.08 2.21 7.00 -2.39 -0.02 2.19 16 50 H 0.08 1.87 8.14 -2.39 -0.02 1.85 16 Total: -1.00 -82.40 402.05 3.70 -78.70 By element: Atomic # 1 Polarization: 6.90 SS G_CDS: 0.38 Total: 7.28 kcal Atomic # 6 Polarization: -7.18 SS G_CDS: 8.94 Total: 1.76 kcal Atomic # 7 Polarization: -102.49 SS G_CDS: -7.58 Total: -110.07 kcal Atomic # 8 Polarization: -21.31 SS G_CDS: -0.06 Total: -21.38 kcal Atomic # 14 Polarization: 41.68 SS G_CDS: 2.03 Total: 43.70 kcal Total: -82.40 3.70 -78.70 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591949070.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.998 kcal (2) G-P(sol) polarization free energy of solvation -82.399 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.600 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.699 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.700 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.298 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds