Wall clock time and date at job start Tue Mar 31 2020 20:30:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53008 * 109.47071 * 2 1 4 4 C 1.53002 * 109.46716 * 240.00555 * 2 1 3 5 5 C 1.50694 * 109.47547 * 59.99589 * 4 2 1 6 6 H 1.07996 * 119.99995 * 0.02562 * 5 4 2 7 7 C 1.37877 * 120.00225 * 179.97438 * 5 4 2 8 8 N 1.31510 * 120.00090 * 180.02562 * 7 5 4 9 9 Si 1.86801 * 119.99720 * 0.02562 * 7 5 4 10 10 H 1.48504 * 109.47294 * 89.99781 * 9 7 5 11 11 H 1.48501 * 109.47189 * 209.99736 * 9 7 5 12 12 H 1.48500 * 109.47333 * 329.99730 * 9 7 5 13 13 C 1.52999 * 109.47187 * 120.00198 * 2 1 3 14 14 N 1.46503 * 109.47124 * 299.99969 * 13 2 1 15 15 C 1.34770 * 119.99736 * 180.02562 * 14 13 2 16 16 O 1.21275 * 120.00110 * 4.88273 * 15 14 13 17 17 C 1.50703 * 119.99833 * 184.88458 * 15 14 13 18 18 N 1.46507 * 109.47062 * 64.32650 * 17 15 14 19 19 C 1.34598 * 126.43817 * 75.45424 * 18 17 15 20 20 N 1.31066 * 106.67804 * 180.02562 * 19 18 17 21 21 N 1.28843 * 107.99239 * 359.97438 * 20 19 18 22 22 N 1.28737 * 109.39654 * 0.02562 * 21 20 19 23 23 C 1.53000 * 109.47322 * 184.32501 * 17 15 14 24 24 C 1.53001 * 109.47359 * 179.97438 * 23 17 15 25 25 C 1.52996 * 109.47044 * 300.00232 * 24 23 17 26 26 C 1.53002 * 109.47193 * 60.00076 * 25 24 23 27 27 C 1.52996 * 109.46882 * 304.32611 * 17 15 14 28 28 H 1.08997 * 109.46682 * 299.99841 * 1 2 3 29 29 H 1.09000 * 109.47250 * 59.99594 * 1 2 3 30 30 H 1.08997 * 109.47277 * 179.97438 * 1 2 3 31 31 H 1.08995 * 109.46704 * 180.02562 * 3 2 1 32 32 H 1.08997 * 109.46702 * 300.00156 * 3 2 1 33 33 H 1.08996 * 109.46406 * 60.00114 * 3 2 1 34 34 H 1.08999 * 109.46637 * 180.02562 * 4 2 1 35 35 H 1.09005 * 109.46680 * 299.99484 * 4 2 1 36 36 H 0.97000 * 119.99695 * 180.02562 * 8 7 5 37 37 H 1.08999 * 109.46909 * 180.02562 * 13 2 1 38 38 H 1.08997 * 109.47125 * 59.99769 * 13 2 1 39 39 H 0.96997 * 119.99991 * 359.97438 * 14 13 2 40 40 H 1.07997 * 126.65561 * 359.97420 * 19 18 17 41 41 H 1.08996 * 109.47093 * 300.00391 * 23 17 15 42 42 H 1.09005 * 109.46940 * 60.00126 * 23 17 15 43 43 H 1.09000 * 109.46930 * 180.02562 * 24 23 17 44 44 H 1.08996 * 109.46606 * 60.00332 * 24 23 17 45 45 H 1.08996 * 109.47501 * 299.99552 * 25 24 23 46 46 H 1.09005 * 109.47195 * 179.97438 * 25 24 23 47 47 H 1.09004 * 109.47211 * 180.02562 * 26 25 24 48 48 H 1.08996 * 109.47325 * 59.99369 * 26 25 24 49 49 H 1.08996 * 109.47501 * 299.99697 * 27 17 15 50 50 H 1.09000 * 109.47167 * 60.00401 * 27 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4426 0.0000 4 6 2.0400 -0.7212 -1.2494 5 6 1.5376 -0.0108 -2.4797 6 1 0.9170 0.8675 -2.3806 7 6 1.8710 -0.4815 -3.7320 8 7 1.4330 0.1388 -4.8058 9 14 2.9450 -2.0002 -3.9035 10 1 2.0864 -3.2111 -3.9495 11 1 3.7373 -1.9074 -5.1561 12 1 3.8651 -2.0897 -2.7413 13 6 2.0401 -0.7213 1.2492 14 7 1.5517 -0.0307 2.4454 15 6 1.8778 -0.4909 3.6694 16 8 2.6464 -1.4222 3.7822 17 6 1.2873 0.1517 4.8980 18 7 -0.1636 -0.0518 4.9061 19 6 -0.8089 -1.1944 5.2059 20 7 -2.0903 -0.9438 5.0914 21 7 -2.2250 0.2884 4.7401 22 7 -1.0627 0.8303 4.6271 23 6 1.8982 -0.4826 6.1491 24 6 1.2991 0.1703 7.3964 25 6 1.6042 1.6695 7.3838 26 6 0.9932 2.3038 6.1327 27 6 1.5919 1.6510 4.8857 28 1 -0.3632 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3634 -1.0276 -0.0005 31 1 3.1300 1.4425 -0.0005 32 1 1.6767 1.9563 -0.8900 33 1 1.6767 1.9563 0.8900 34 1 3.1300 -0.7215 -1.2491 35 1 1.6766 -1.7489 -1.2493 36 1 1.6673 -0.1926 -5.6868 37 1 3.1301 -0.7209 1.2494 38 1 1.6767 -1.7489 1.2492 39 1 0.9944 0.7582 2.3565 40 1 -0.3582 -2.1351 5.4857 41 1 1.6813 -1.5507 6.1578 42 1 2.9777 -0.3311 6.1431 43 1 1.7348 -0.2813 8.2877 44 1 0.2197 0.0192 7.4026 45 1 2.6837 1.8206 7.3776 46 1 1.1771 2.1348 8.2722 47 1 1.2109 3.3718 6.1235 48 1 -0.0862 2.1527 6.1389 49 1 2.6712 1.8025 4.8796 50 1 1.1565 2.1029 3.9944 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000593157981.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:30:58 Heat of formation + Delta-G solvation = 63.684974 kcal Electronic energy + Delta-G solvation = -30954.229932 eV Core-core repulsion = 27018.663632 eV Total energy + Delta-G solvation = -3935.566301 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -44.53638 -40.89582 -38.65841 -37.33396 -34.93032 -33.98524 -32.87125 -32.26139 -31.33786 -30.89027 -27.94869 -26.67020 -26.65617 -25.14629 -24.27385 -23.53262 -22.84617 -22.28220 -20.81058 -20.57941 -18.94076 -17.70534 -17.67911 -16.91437 -16.66486 -16.11170 -16.08239 -15.27232 -15.09503 -14.74039 -14.58806 -14.13018 -13.93192 -13.77883 -13.58796 -13.43616 -13.23532 -12.93786 -12.84094 -12.78063 -12.47794 -12.35347 -12.25410 -11.79559 -11.60979 -11.35992 -11.35369 -11.24321 -11.23663 -11.08343 -11.07176 -10.79326 -10.70685 -10.61640 -10.56472 -10.12918 -10.08497 -9.81589 -9.58065 -9.18075 -9.07826 -8.58925 -6.09132 -4.07155 0.97503 1.30315 2.06770 2.40956 2.73956 3.26899 3.35216 3.37556 3.57404 3.85501 3.98925 4.08857 4.36761 4.40319 4.41209 4.47309 4.59957 4.71944 4.82551 4.94921 5.06706 5.16316 5.19196 5.21618 5.28006 5.33972 5.36530 5.47123 5.49318 5.49833 5.52409 5.63855 5.69662 5.79164 5.91562 5.95090 5.96751 6.00027 6.17050 6.18232 6.49127 6.49478 6.76786 6.92092 6.95605 7.08836 7.19488 7.25995 7.71575 7.78259 8.39756 8.46955 8.94552 9.52895 11.03541 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.018632 B = 0.003034 C = 0.002932 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1502.420543 B = 9227.559602 C = 9548.606858 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.063 4.063 3 C -0.129 4.129 4 C 0.000 4.000 5 C -0.513 4.513 6 H 0.078 0.922 7 C 0.068 3.932 8 N -0.902 5.902 9 Si 0.875 3.125 10 H -0.278 1.278 11 H -0.288 1.288 12 H -0.266 1.266 13 C 0.123 3.877 14 N -0.705 5.705 15 C 0.504 3.496 16 O -0.519 6.519 17 C 0.160 3.840 18 N -0.295 5.295 19 C 0.166 3.834 20 N -0.303 5.303 21 N -0.073 5.073 22 N -0.084 5.084 23 C -0.111 4.111 24 C -0.124 4.124 25 C -0.124 4.124 26 C -0.123 4.123 27 C -0.118 4.118 28 H 0.028 0.972 29 H 0.076 0.924 30 H 0.046 0.954 31 H 0.049 0.951 32 H 0.075 0.925 33 H 0.029 0.971 34 H 0.019 0.981 35 H 0.013 0.987 36 H 0.263 0.737 37 H 0.071 0.929 38 H 0.067 0.933 39 H 0.404 0.596 40 H 0.229 0.771 41 H 0.086 0.914 42 H 0.105 0.895 43 H 0.079 0.921 44 H 0.059 0.941 45 H 0.069 0.931 46 H 0.068 0.932 47 H 0.078 0.922 48 H 0.075 0.925 49 H 0.097 0.903 50 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.990 1.889 26.183 26.326 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.063 4.063 3 C -0.186 4.186 4 C -0.038 4.038 5 C -0.551 4.551 6 H 0.096 0.904 7 C -0.133 4.133 8 N -0.541 5.541 9 Si 0.702 3.298 10 H -0.204 1.204 11 H -0.214 1.214 12 H -0.191 1.191 13 C 0.000 4.000 14 N -0.356 5.356 15 C 0.285 3.715 16 O -0.394 6.394 17 C 0.073 3.927 18 N -0.099 5.099 19 C -0.132 4.132 20 N -0.151 5.151 21 N -0.068 5.068 22 N -0.070 5.070 23 C -0.149 4.149 24 C -0.161 4.161 25 C -0.161 4.161 26 C -0.161 4.161 27 C -0.156 4.156 28 H 0.047 0.953 29 H 0.095 0.905 30 H 0.065 0.935 31 H 0.068 0.932 32 H 0.094 0.906 33 H 0.048 0.952 34 H 0.037 0.963 35 H 0.032 0.968 36 H 0.073 0.927 37 H 0.090 0.910 38 H 0.085 0.915 39 H 0.241 0.759 40 H 0.246 0.754 41 H 0.104 0.896 42 H 0.123 0.877 43 H 0.097 0.903 44 H 0.078 0.922 45 H 0.088 0.912 46 H 0.087 0.913 47 H 0.096 0.904 48 H 0.093 0.907 49 H 0.116 0.884 50 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 1.417 2.011 25.744 25.861 hybrid contribution 1.187 -1.118 -0.266 1.652 sum 2.604 0.894 25.478 25.626 Atomic orbital electron populations 1.21780 0.94637 1.01269 1.00939 1.20718 0.95884 0.96028 0.93702 1.21783 1.00484 0.95428 1.00948 1.19579 0.96269 0.95455 0.92488 1.21049 1.32037 1.13465 0.88562 0.90359 1.24994 0.95666 0.96721 0.95966 1.69897 1.45752 1.40486 0.97919 0.86862 0.81291 0.83933 0.77680 1.20352 1.21425 1.19053 1.21817 0.99346 0.96022 0.82778 1.46278 1.51959 1.31711 1.05661 1.20119 0.82847 0.84164 0.84340 1.90765 1.34765 1.27760 1.86081 1.21661 0.73236 1.00720 0.97118 1.48677 1.08972 1.08238 1.43966 1.27636 0.89225 0.94826 1.01562 1.75058 1.14120 1.08753 1.17151 1.78676 1.13597 1.00630 1.13863 1.78851 0.93472 1.17431 1.17280 1.21833 1.02200 1.00617 0.90288 1.21621 1.00934 0.96200 0.97386 1.21614 1.01442 0.94869 0.98208 1.21623 1.01373 1.00292 0.92799 1.21849 1.03353 0.89057 1.01331 0.95276 0.90545 0.93452 0.93215 0.90580 0.95160 0.96301 0.96839 0.92717 0.91043 0.91472 0.75934 0.75435 0.89580 0.87709 0.90277 0.92222 0.91206 0.91306 0.90363 0.90661 0.88430 0.89397 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.27 8.05 37.16 0.30 -1.97 16 2 C -0.06 -1.11 0.54 -154.50 -0.08 -1.19 16 3 C -0.13 -2.14 8.05 37.16 0.30 -1.84 16 4 C 0.00 0.00 3.11 -27.88 -0.09 -0.09 16 5 C -0.51 -13.51 8.20 -34.44 -0.28 -13.80 16 6 H 0.08 2.19 5.92 -52.49 -0.31 1.88 16 7 C 0.07 1.89 5.47 -17.82 -0.10 1.80 16 8 N -0.90 -26.92 13.96 55.43 0.77 -26.15 16 9 Si 0.87 21.14 27.47 -169.99 -4.67 16.48 16 10 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 11 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 12 H -0.27 -6.17 6.54 56.52 0.37 -5.80 16 13 C 0.12 1.89 4.57 -4.04 -0.02 1.87 16 14 N -0.70 -8.92 4.86 -60.30 -0.29 -9.21 16 15 C 0.50 5.92 6.71 -10.99 -0.07 5.84 16 16 O -0.52 -7.43 15.99 5.56 0.09 -7.34 16 17 C 0.16 1.37 0.70 -132.97 -0.09 1.28 16 18 N -0.29 -2.91 2.26 -50.89 -0.12 -3.03 16 19 C 0.17 1.64 11.30 -90.40 -1.02 0.62 16 20 N -0.30 -3.91 12.36 29.59 0.37 -3.55 16 21 N -0.07 -1.03 13.43 60.35 0.81 -0.22 16 22 N -0.08 -1.01 10.63 60.35 0.64 -0.37 16 23 C -0.11 -0.74 3.73 -26.73 -0.10 -0.84 16 24 C -0.12 -0.70 5.75 -26.73 -0.15 -0.85 16 25 C -0.12 -0.67 5.92 -26.73 -0.16 -0.83 16 26 C -0.12 -0.82 5.71 -26.75 -0.15 -0.97 16 27 C -0.12 -0.87 4.26 -26.75 -0.11 -0.98 16 28 H 0.03 0.44 6.86 -51.93 -0.36 0.09 16 29 H 0.08 1.51 6.62 -51.93 -0.34 1.17 16 30 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 31 H 0.05 0.81 8.14 -51.93 -0.42 0.38 16 32 H 0.08 1.44 6.62 -51.93 -0.34 1.10 16 33 H 0.03 0.41 6.86 -51.93 -0.36 0.05 16 34 H 0.02 0.42 7.20 -51.93 -0.37 0.05 16 35 H 0.01 0.30 7.57 -51.93 -0.39 -0.09 16 36 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 37 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 38 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 39 H 0.40 4.83 5.20 -40.82 -0.21 4.62 16 40 H 0.23 1.40 7.60 -52.49 -0.40 1.00 16 41 H 0.09 0.55 7.32 -51.93 -0.38 0.17 16 42 H 0.10 0.67 8.14 -51.93 -0.42 0.24 16 43 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 44 H 0.06 0.41 7.07 -51.93 -0.37 0.05 16 45 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 46 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 47 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 48 H 0.07 0.65 6.18 -51.93 -0.32 0.33 16 49 H 0.10 0.60 8.14 -51.93 -0.42 0.18 16 50 H 0.09 0.70 7.14 -51.93 -0.37 0.33 16 LS Contribution 381.66 15.07 5.75 5.75 Total: -1.00 -31.63 381.66 -6.40 -38.04 By element: Atomic # 1 Polarization: 9.47 SS G_CDS: -7.92 Total: 1.54 kcal Atomic # 6 Polarization: -10.10 SS G_CDS: -1.84 Total: -11.94 kcal Atomic # 7 Polarization: -44.71 SS G_CDS: 2.18 Total: -42.53 kcal Atomic # 8 Polarization: -7.43 SS G_CDS: 0.09 Total: -7.34 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -4.67 Total: 16.48 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -31.63 -6.40 -38.04 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593157981.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.723 kcal (2) G-P(sol) polarization free energy of solvation -31.634 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.090 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.405 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.038 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.685 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds