Wall clock time and date at job start Tue Mar 31 2020 20:30:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53008 * 109.47071 * 2 1 4 4 C 1.53002 * 109.46716 * 240.00555 * 2 1 3 5 5 C 1.50694 * 109.47547 * 59.99589 * 4 2 1 6 6 H 1.07996 * 119.99995 * 0.02562 * 5 4 2 7 7 C 1.37877 * 120.00225 * 179.97438 * 5 4 2 8 8 N 1.31510 * 120.00090 * 180.02562 * 7 5 4 9 9 Si 1.86801 * 119.99720 * 0.02562 * 7 5 4 10 10 H 1.48504 * 109.47294 * 89.99781 * 9 7 5 11 11 H 1.48501 * 109.47189 * 209.99736 * 9 7 5 12 12 H 1.48500 * 109.47333 * 329.99730 * 9 7 5 13 13 C 1.52999 * 109.47187 * 120.00198 * 2 1 3 14 14 N 1.46503 * 109.47124 * 299.99969 * 13 2 1 15 15 C 1.34770 * 119.99736 * 180.02562 * 14 13 2 16 16 O 1.21275 * 120.00110 * 4.88273 * 15 14 13 17 17 C 1.50703 * 119.99833 * 184.88458 * 15 14 13 18 18 N 1.46507 * 109.47062 * 64.32650 * 17 15 14 19 19 C 1.34598 * 126.43817 * 75.45424 * 18 17 15 20 20 N 1.31066 * 106.67804 * 180.02562 * 19 18 17 21 21 N 1.28843 * 107.99239 * 359.97438 * 20 19 18 22 22 N 1.28737 * 109.39654 * 0.02562 * 21 20 19 23 23 C 1.53000 * 109.47322 * 184.32501 * 17 15 14 24 24 C 1.53001 * 109.47359 * 179.97438 * 23 17 15 25 25 C 1.52996 * 109.47044 * 300.00232 * 24 23 17 26 26 C 1.53002 * 109.47193 * 60.00076 * 25 24 23 27 27 C 1.52996 * 109.46882 * 304.32611 * 17 15 14 28 28 H 1.08997 * 109.46682 * 299.99841 * 1 2 3 29 29 H 1.09000 * 109.47250 * 59.99594 * 1 2 3 30 30 H 1.08997 * 109.47277 * 179.97438 * 1 2 3 31 31 H 1.08995 * 109.46704 * 180.02562 * 3 2 1 32 32 H 1.08997 * 109.46702 * 300.00156 * 3 2 1 33 33 H 1.08996 * 109.46406 * 60.00114 * 3 2 1 34 34 H 1.08999 * 109.46637 * 180.02562 * 4 2 1 35 35 H 1.09005 * 109.46680 * 299.99484 * 4 2 1 36 36 H 0.97000 * 119.99695 * 180.02562 * 8 7 5 37 37 H 1.08999 * 109.46909 * 180.02562 * 13 2 1 38 38 H 1.08997 * 109.47125 * 59.99769 * 13 2 1 39 39 H 0.96997 * 119.99991 * 359.97438 * 14 13 2 40 40 H 1.07997 * 126.65561 * 359.97420 * 19 18 17 41 41 H 1.08996 * 109.47093 * 300.00391 * 23 17 15 42 42 H 1.09005 * 109.46940 * 60.00126 * 23 17 15 43 43 H 1.09000 * 109.46930 * 180.02562 * 24 23 17 44 44 H 1.08996 * 109.46606 * 60.00332 * 24 23 17 45 45 H 1.08996 * 109.47501 * 299.99552 * 25 24 23 46 46 H 1.09005 * 109.47195 * 179.97438 * 25 24 23 47 47 H 1.09004 * 109.47211 * 180.02562 * 26 25 24 48 48 H 1.08996 * 109.47325 * 59.99369 * 26 25 24 49 49 H 1.08996 * 109.47501 * 299.99697 * 27 17 15 50 50 H 1.09000 * 109.47167 * 60.00401 * 27 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4426 0.0000 4 6 2.0400 -0.7212 -1.2494 5 6 1.5376 -0.0108 -2.4797 6 1 0.9170 0.8675 -2.3806 7 6 1.8710 -0.4815 -3.7320 8 7 1.4330 0.1388 -4.8058 9 14 2.9450 -2.0002 -3.9035 10 1 2.0864 -3.2111 -3.9495 11 1 3.7373 -1.9074 -5.1561 12 1 3.8651 -2.0897 -2.7413 13 6 2.0401 -0.7213 1.2492 14 7 1.5517 -0.0307 2.4454 15 6 1.8778 -0.4909 3.6694 16 8 2.6464 -1.4222 3.7822 17 6 1.2873 0.1517 4.8980 18 7 -0.1636 -0.0518 4.9061 19 6 -0.8089 -1.1944 5.2059 20 7 -2.0903 -0.9438 5.0914 21 7 -2.2250 0.2884 4.7401 22 7 -1.0627 0.8303 4.6271 23 6 1.8982 -0.4826 6.1491 24 6 1.2991 0.1703 7.3964 25 6 1.6042 1.6695 7.3838 26 6 0.9932 2.3038 6.1327 27 6 1.5919 1.6510 4.8857 28 1 -0.3632 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3634 -1.0276 -0.0005 31 1 3.1300 1.4425 -0.0005 32 1 1.6767 1.9563 -0.8900 33 1 1.6767 1.9563 0.8900 34 1 3.1300 -0.7215 -1.2491 35 1 1.6766 -1.7489 -1.2493 36 1 1.6673 -0.1926 -5.6868 37 1 3.1301 -0.7209 1.2494 38 1 1.6767 -1.7489 1.2492 39 1 0.9944 0.7582 2.3565 40 1 -0.3582 -2.1351 5.4857 41 1 1.6813 -1.5507 6.1578 42 1 2.9777 -0.3311 6.1431 43 1 1.7348 -0.2813 8.2877 44 1 0.2197 0.0192 7.4026 45 1 2.6837 1.8206 7.3776 46 1 1.1771 2.1348 8.2722 47 1 1.2109 3.3718 6.1235 48 1 -0.0862 2.1527 6.1389 49 1 2.6712 1.8025 4.8796 50 1 1.1565 2.1029 3.9944 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000593157981.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:30:57 Heat of formation + Delta-G solvation = 44.401433 kcal Electronic energy + Delta-G solvation = -30955.066129 eV Core-core repulsion = 27018.663632 eV Total energy + Delta-G solvation = -3936.402498 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -45.38788 -41.77813 -39.59775 -38.55699 -35.72576 -35.30570 -34.10893 -33.69491 -31.97548 -31.58028 -29.78062 -28.10583 -27.84596 -25.93615 -25.04607 -24.82662 -23.65039 -23.41255 -21.66721 -21.27877 -20.14822 -18.98768 -18.78779 -18.43541 -17.48439 -17.15980 -16.85596 -16.33270 -16.24449 -15.79131 -15.39875 -15.35025 -15.20680 -15.13439 -14.51118 -14.30689 -14.27341 -14.07712 -14.02471 -13.77149 -13.49249 -13.33170 -13.08385 -12.99148 -12.89177 -12.72282 -12.51792 -12.37669 -12.26583 -12.23298 -12.20948 -11.81654 -11.77380 -11.61020 -11.58489 -11.42695 -11.35064 -11.26225 -10.99706 -10.81663 -10.72893 -10.28197 -8.24189 -6.25314 0.14453 0.49832 1.16921 1.35355 1.37508 1.47293 1.52765 1.80182 2.37384 2.92414 3.11223 3.13701 3.31021 3.36169 3.61890 3.79497 3.93125 3.95403 3.99410 4.04408 4.05249 4.19448 4.27752 4.35015 4.46873 4.51576 4.58172 4.60058 4.65203 4.66382 4.80244 4.82446 4.89756 4.94572 5.00848 5.03159 5.05269 5.11521 5.16652 5.22385 5.24083 5.24481 5.31939 5.34500 5.43738 5.48482 5.59879 5.71885 6.18522 6.35063 6.80268 6.82165 7.37617 7.51106 8.91614 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.018632 B = 0.003034 C = 0.002932 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1502.420543 B = 9227.559602 C = 9548.606858 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.058 4.058 3 C -0.124 4.124 4 C -0.001 4.001 5 C -0.505 4.505 6 H 0.048 0.952 7 C 0.005 3.995 8 N -0.952 5.952 9 Si 0.937 3.063 10 H -0.273 1.273 11 H -0.289 1.289 12 H -0.246 1.246 13 C 0.136 3.864 14 N -0.705 5.705 15 C 0.509 3.491 16 O -0.540 6.540 17 C 0.166 3.834 18 N -0.290 5.290 19 C 0.174 3.826 20 N -0.330 5.330 21 N -0.106 5.106 22 N -0.085 5.085 23 C -0.109 4.109 24 C -0.118 4.118 25 C -0.123 4.123 26 C -0.120 4.120 27 C -0.120 4.120 28 H 0.052 0.948 29 H 0.045 0.955 30 H 0.042 0.958 31 H 0.054 0.946 32 H 0.044 0.956 33 H 0.062 0.938 34 H 0.022 0.978 35 H 0.013 0.987 36 H 0.263 0.737 37 H 0.073 0.927 38 H 0.061 0.939 39 H 0.408 0.592 40 H 0.263 0.737 41 H 0.091 0.909 42 H 0.114 0.886 43 H 0.096 0.904 44 H 0.044 0.956 45 H 0.084 0.916 46 H 0.072 0.928 47 H 0.087 0.913 48 H 0.053 0.947 49 H 0.115 0.885 50 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.817 1.061 29.068 29.337 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.058 4.058 3 C -0.181 4.181 4 C -0.038 4.038 5 C -0.543 4.543 6 H 0.066 0.934 7 C -0.192 4.192 8 N -0.594 5.594 9 Si 0.761 3.239 10 H -0.199 1.199 11 H -0.215 1.215 12 H -0.170 1.170 13 C 0.013 3.987 14 N -0.356 5.356 15 C 0.292 3.708 16 O -0.416 6.416 17 C 0.080 3.920 18 N -0.093 5.093 19 C -0.124 4.124 20 N -0.178 5.178 21 N -0.100 5.100 22 N -0.072 5.072 23 C -0.148 4.148 24 C -0.156 4.156 25 C -0.160 4.160 26 C -0.158 4.158 27 C -0.158 4.158 28 H 0.071 0.929 29 H 0.064 0.936 30 H 0.061 0.939 31 H 0.073 0.927 32 H 0.063 0.937 33 H 0.081 0.919 34 H 0.040 0.960 35 H 0.032 0.968 36 H 0.072 0.928 37 H 0.091 0.909 38 H 0.080 0.920 39 H 0.245 0.755 40 H 0.279 0.721 41 H 0.109 0.891 42 H 0.133 0.867 43 H 0.115 0.885 44 H 0.063 0.937 45 H 0.103 0.897 46 H 0.090 0.910 47 H 0.106 0.894 48 H 0.072 0.928 49 H 0.134 0.866 50 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 3.238 1.193 28.665 28.872 hybrid contribution 0.599 -0.799 -1.122 1.502 sum 3.837 0.394 27.543 27.811 Atomic orbital electron populations 1.21673 0.94778 1.00844 1.00592 1.20564 0.95657 0.96455 0.93171 1.21701 1.00731 0.94660 1.01026 1.19538 0.96272 0.95342 0.92691 1.21359 1.30403 1.12330 0.90253 0.93368 1.25869 0.97468 1.00014 0.95803 1.70050 1.48089 1.42717 0.98501 0.85862 0.79801 0.80059 0.78139 1.19896 1.21514 1.16966 1.21440 0.99252 0.95436 0.82603 1.46164 1.52218 1.31840 1.05420 1.20514 0.82198 0.83574 0.84555 1.90762 1.35724 1.28654 1.86435 1.21771 0.72290 1.01595 0.96365 1.48777 1.09231 1.07966 1.43371 1.28251 0.88497 0.95675 0.99965 1.74990 1.15917 1.08634 1.18229 1.78662 1.14613 1.01387 1.15347 1.78799 0.93423 1.17859 1.17095 1.21923 1.02573 1.00856 0.89402 1.21593 1.00001 0.96429 0.97540 1.21629 1.02255 0.94544 0.97559 1.21589 1.00009 1.01014 0.93158 1.21943 1.04479 0.87917 1.01425 0.92895 0.93571 0.93873 0.92722 0.93725 0.91872 0.95989 0.96826 0.92841 0.90889 0.92044 0.75458 0.72094 0.89061 0.86743 0.88528 0.93689 0.89728 0.90956 0.89419 0.92815 0.86643 0.90124 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.23 8.05 71.98 0.58 -3.65 16 2 C -0.06 -1.99 0.54 -52.18 -0.03 -2.01 16 3 C -0.12 -3.98 8.05 71.98 0.58 -3.40 16 4 C 0.00 -0.02 3.11 29.85 0.09 0.07 16 5 C -0.51 -27.16 8.20 25.60 0.21 -26.95 16 6 H 0.05 2.83 5.92 -2.91 -0.02 2.81 16 7 C 0.00 0.27 5.47 84.66 0.46 0.73 16 8 N -0.95 -58.64 13.96 21.45 0.30 -58.34 16 9 Si 0.94 43.55 27.47 68.60 1.88 45.43 16 10 H -0.27 -12.45 7.11 99.48 0.71 -11.74 16 11 H -0.29 -13.39 7.11 99.48 0.71 -12.69 16 12 H -0.25 -10.55 6.54 99.48 0.65 -9.90 16 13 C 0.14 3.89 4.57 86.38 0.39 4.28 16 14 N -0.70 -16.10 4.86 -463.07 -2.25 -18.35 16 15 C 0.51 10.52 6.71 87.66 0.59 11.11 16 16 O -0.54 -13.86 15.99 -3.01 -0.05 -13.91 16 17 C 0.17 2.40 0.70 2.86 0.00 2.41 16 18 N -0.29 -5.16 2.26 -314.92 -0.71 -5.87 16 19 C 0.17 3.10 11.30 180.27 2.04 5.14 16 20 N -0.33 -8.24 12.36 -60.30 -0.75 -8.99 16 21 N -0.11 -2.93 13.43 37.01 0.50 -2.43 16 22 N -0.09 -1.96 10.63 37.02 0.39 -1.56 16 23 C -0.11 -1.08 3.73 30.59 0.11 -0.97 16 24 C -0.12 -0.96 5.75 30.59 0.18 -0.79 16 25 C -0.12 -0.95 5.92 30.59 0.18 -0.77 16 26 C -0.12 -1.32 5.71 30.58 0.17 -1.14 16 27 C -0.12 -1.43 4.26 30.58 0.13 -1.30 16 28 H 0.05 1.56 6.86 -2.39 -0.02 1.55 16 29 H 0.05 1.88 6.62 -2.39 -0.02 1.86 16 30 H 0.04 1.51 8.14 -2.39 -0.02 1.49 16 31 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 32 H 0.04 1.71 6.62 -2.39 -0.02 1.70 16 33 H 0.06 1.58 6.86 -2.39 -0.02 1.57 16 34 H 0.02 0.94 7.20 -2.39 -0.02 0.93 16 35 H 0.01 0.59 7.57 -2.38 -0.02 0.57 16 36 H 0.26 15.28 8.31 -92.71 -0.77 14.51 16 37 H 0.07 2.10 8.14 -2.39 -0.02 2.08 16 38 H 0.06 1.85 8.14 -2.39 -0.02 1.83 16 39 H 0.41 8.75 5.20 -92.71 -0.48 8.27 16 40 H 0.26 2.43 7.60 -2.91 -0.02 2.41 16 41 H 0.09 0.84 7.32 -2.39 -0.02 0.83 16 42 H 0.11 1.00 8.14 -2.38 -0.02 0.98 16 43 H 0.10 0.49 8.14 -2.39 -0.02 0.48 16 44 H 0.04 0.52 7.07 -2.39 -0.02 0.50 16 45 H 0.08 0.44 8.14 -2.39 -0.02 0.42 16 46 H 0.07 0.54 8.14 -2.38 -0.02 0.52 16 47 H 0.09 0.80 8.14 -2.38 -0.02 0.78 16 48 H 0.05 0.85 6.18 -2.39 -0.01 0.83 16 49 H 0.12 1.00 8.14 -2.39 -0.02 0.98 16 50 H 0.08 1.10 7.14 -2.39 -0.02 1.08 16 Total: -1.00 -70.40 381.66 5.43 -64.97 By element: Atomic # 1 Polarization: 15.89 SS G_CDS: 0.41 Total: 16.30 kcal Atomic # 6 Polarization: -22.94 SS G_CDS: 5.69 Total: -17.25 kcal Atomic # 7 Polarization: -93.03 SS G_CDS: -2.52 Total: -95.55 kcal Atomic # 8 Polarization: -13.86 SS G_CDS: -0.05 Total: -13.91 kcal Atomic # 14 Polarization: 43.55 SS G_CDS: 1.88 Total: 45.43 kcal Total: -70.40 5.43 -64.97 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593157981.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.375 kcal (2) G-P(sol) polarization free energy of solvation -70.399 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.976 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.425 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.974 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.401 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds