Wall clock time and date at job start Tue Mar 31 2020 20:31:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 N 1.29112 * 126.00553 * 2 1 4 4 N 1.29025 * 110.25801 * 179.97438 * 3 2 1 5 5 C 1.32911 * 108.63616 * 359.97438 * 4 3 2 6 6 C 1.34397 * 126.01093 * 179.97438 * 2 1 3 7 7 C 1.50538 * 129.25611 * 0.13354 * 6 2 1 8 8 C 1.53429 * 108.32822 * 163.59322 * 7 6 2 9 9 C 1.53113 * 109.54701 * 49.72388 * 8 7 6 10 10 H 1.08997 * 109.45396 * 49.94451 * 9 8 7 11 11 N 1.46506 * 109.45258 * 169.90028 * 9 8 7 12 12 C 1.34777 * 119.99873 * 205.00185 * 11 9 8 13 13 O 1.21592 * 119.99797 * 359.97438 * 12 11 9 14 14 N 1.34774 * 119.99902 * 179.97438 * 12 11 9 15 15 C 1.46499 * 119.99966 * 179.97438 * 14 12 11 16 16 C 1.53002 * 109.47337 * 180.02562 * 15 14 12 17 17 C 1.53002 * 109.46471 * 299.99670 * 16 15 14 18 18 C 1.53000 * 109.47123 * 59.99635 * 16 15 14 19 19 C 1.53000 * 109.47022 * 180.02562 * 16 15 14 20 20 C 1.50700 * 109.46585 * 179.97438 * 19 16 15 21 21 H 1.07993 * 120.00411 * 359.97438 * 20 19 16 22 22 C 1.37883 * 119.99862 * 179.97438 * 20 19 16 23 23 N 1.31516 * 119.99663 * 0.02562 * 22 20 19 24 24 Si 1.86800 * 120.00136 * 179.97438 * 22 20 19 25 25 H 1.48492 * 109.47033 * 0.02562 * 24 22 20 26 26 H 1.48497 * 109.46865 * 120.00248 * 24 22 20 27 27 H 1.48496 * 109.46995 * 240.00089 * 24 22 20 28 28 C 1.50591 * 129.16027 * 180.24548 * 5 4 3 29 29 H 1.09000 * 109.47090 * 269.99566 * 1 2 3 30 30 H 1.08995 * 109.47375 * 30.00354 * 1 2 3 31 31 H 1.09002 * 109.46634 * 149.99985 * 1 2 3 32 32 H 1.09003 * 109.69007 * 43.88812 * 7 6 2 33 33 H 1.08999 * 109.69096 * 283.30682 * 7 6 2 34 34 H 1.08999 * 109.46108 * 289.70407 * 8 7 6 35 35 H 1.08997 * 109.45075 * 169.73683 * 8 7 6 36 36 H 0.96995 * 120.00050 * 24.72300 * 11 9 8 37 37 H 0.96999 * 120.00050 * 0.02562 * 14 12 11 38 38 H 1.09005 * 109.47136 * 300.00071 * 15 14 12 39 39 H 1.08996 * 109.47174 * 59.99413 * 15 14 12 40 40 H 1.09005 * 109.46942 * 60.00455 * 17 16 15 41 41 H 1.08998 * 109.46776 * 179.97438 * 17 16 15 42 42 H 1.09002 * 109.47388 * 299.99753 * 17 16 15 43 43 H 1.08997 * 109.46749 * 60.00474 * 18 16 15 44 44 H 1.08996 * 109.46383 * 180.02562 * 18 16 15 45 45 H 1.08996 * 109.47024 * 300.00331 * 18 16 15 46 46 H 1.09000 * 109.46771 * 299.99277 * 19 16 15 47 47 H 1.08997 * 109.47271 * 59.99996 * 19 16 15 48 48 H 0.97005 * 120.00108 * 180.02562 * 23 22 20 49 49 H 1.08997 * 109.69536 * 43.65697 * 28 5 4 50 50 H 1.09002 * 109.69130 * 283.07210 * 28 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2240 1.0445 0.0000 4 7 3.4658 0.6943 0.0005 5 6 3.5328 -0.6331 0.0015 6 6 2.2551 -1.0871 0.0005 7 6 1.8723 -2.5430 -0.0016 8 6 3.1016 -3.3646 -0.4114 9 6 4.3082 -2.9341 0.4271 10 1 4.0350 -2.9321 1.4822 11 7 5.4124 -3.8723 0.2107 12 6 6.3611 -4.0260 1.1557 13 8 6.3007 -3.3855 2.1875 14 7 7.3766 -4.8895 0.9569 15 6 8.4081 -5.0561 1.9838 16 6 9.4362 -6.0861 1.5116 17 6 8.7397 -7.4261 1.2661 18 6 10.0834 -5.6021 0.2124 19 6 10.5131 -6.2605 2.5843 20 6 11.5253 -7.2755 2.1194 21 1 11.4118 -7.7491 1.1555 22 6 12.5966 -7.5996 2.9248 23 7 12.7346 -7.0232 4.0988 24 14 13.8510 -8.8582 2.3488 25 1 13.4705 -9.3560 1.0026 26 1 15.1924 -8.2248 2.2811 27 1 13.8875 -9.9939 3.3049 28 6 4.7469 -1.5240 0.0074 29 1 -0.3633 -0.0001 1.0277 30 1 -0.3634 0.8899 -0.5139 31 1 -0.3633 -0.8900 -0.5139 32 1 1.0649 -2.7095 -0.7147 33 1 1.5486 -2.8391 0.9962 34 1 3.3148 -3.1971 -1.4671 35 1 2.9027 -4.4232 -0.2446 36 1 5.4586 -4.3859 -0.6108 37 1 7.4249 -5.4001 0.1336 38 1 8.9045 -4.1015 2.1584 39 1 7.9469 -5.4004 2.9094 40 1 7.9723 -7.3022 0.5020 41 1 9.4721 -8.1598 0.9293 42 1 8.2787 -7.7710 2.1917 43 1 10.5795 -4.6475 0.3874 44 1 10.8154 -6.3362 -0.1241 45 1 9.3159 -5.4782 -0.5516 46 1 11.0092 -5.3060 2.7596 47 1 10.0517 -6.6056 3.5096 48 1 13.4885 -7.2509 4.6653 49 1 5.4790 -1.1425 0.7190 50 1 5.1848 -1.5547 -0.9903 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594242917.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:31:43 Heat of formation + Delta-G solvation = 20.465037 kcal Electronic energy + Delta-G solvation = -28807.300706 eV Core-core repulsion = 24869.860248 eV Total energy + Delta-G solvation = -3937.440458 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -44.42357 -41.20631 -39.09285 -38.02438 -35.89846 -35.20718 -34.68320 -33.72183 -31.30645 -30.37249 -29.00463 -28.64080 -27.90735 -27.41858 -25.32333 -24.63819 -23.47625 -22.36504 -21.80348 -20.89781 -20.08657 -18.91910 -18.34873 -18.11893 -17.83641 -17.10140 -16.62456 -16.47344 -15.94654 -15.55175 -15.39962 -15.19937 -14.90979 -14.81698 -14.62778 -14.58290 -14.31444 -14.03357 -13.90321 -13.78803 -13.59257 -13.17054 -13.01380 -12.86757 -12.68871 -12.66973 -12.54140 -12.30040 -12.25111 -12.19604 -11.91948 -11.86703 -11.60551 -11.49258 -11.34106 -10.94945 -10.93548 -10.80973 -10.50139 -10.33475 -9.89849 -9.71330 -8.11858 -6.19572 0.56306 1.43385 1.43451 1.44353 1.49710 1.56173 1.74268 2.22369 2.46125 3.13577 3.22701 3.38236 3.66054 3.76869 3.81868 3.83436 4.03195 4.14370 4.17388 4.26337 4.27980 4.30216 4.46292 4.56960 4.59199 4.71537 4.73671 4.78870 4.80070 4.88542 4.92838 4.99368 5.02402 5.12271 5.16238 5.17642 5.23632 5.25589 5.45671 5.53174 5.54682 5.57634 5.58940 5.64078 5.68617 5.85091 5.93026 6.10803 6.33781 6.96164 7.21582 7.45023 7.48137 7.68085 9.00871 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.036141 B = 0.001823 C = 0.001792 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 774.558971 B =15351.816304 C =15620.279573 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.065 3.935 2 N -0.276 5.276 3 N -0.134 5.134 4 N -0.310 5.310 5 C -0.038 4.038 6 C -0.008 4.008 7 C -0.035 4.035 8 C -0.113 4.113 9 C 0.171 3.829 10 H 0.068 0.932 11 N -0.722 5.722 12 C 0.698 3.302 13 O -0.641 6.641 14 N -0.722 5.722 15 C 0.162 3.838 16 C -0.064 4.064 17 C -0.120 4.120 18 C -0.121 4.121 19 C 0.038 3.962 20 C -0.511 4.511 21 H 0.075 0.925 22 C -0.008 4.008 23 N -0.939 5.939 24 Si 0.960 3.040 25 H -0.255 1.255 26 H -0.286 1.286 27 H -0.285 1.285 28 C -0.041 4.041 29 H 0.107 0.893 30 H 0.108 0.892 31 H 0.136 0.864 32 H 0.127 0.873 33 H 0.103 0.897 34 H 0.093 0.907 35 H 0.113 0.887 36 H 0.417 0.583 37 H 0.411 0.589 38 H 0.038 0.962 39 H 0.042 0.958 40 H 0.073 0.927 41 H 0.054 0.946 42 H 0.036 0.964 43 H 0.033 0.967 44 H 0.055 0.945 45 H 0.072 0.928 46 H -0.017 1.017 47 H -0.014 1.014 48 H 0.259 0.741 49 H 0.051 0.949 50 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.533 4.516 -16.426 34.964 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 N -0.069 5.069 3 N -0.112 5.112 4 N -0.173 5.173 5 C -0.180 4.180 6 C -0.144 4.144 7 C -0.074 4.074 8 C -0.151 4.151 9 C 0.065 3.935 10 H 0.087 0.913 11 N -0.378 5.378 12 C 0.398 3.602 13 O -0.523 6.523 14 N -0.379 5.379 15 C 0.037 3.963 16 C -0.065 4.065 17 C -0.177 4.177 18 C -0.178 4.178 19 C 0.001 3.999 20 C -0.549 4.549 21 H 0.093 0.907 22 C -0.205 4.205 23 N -0.581 5.581 24 Si 0.785 3.215 25 H -0.178 1.178 26 H -0.213 1.213 27 H -0.211 1.211 28 C -0.081 4.081 29 H 0.125 0.875 30 H 0.127 0.873 31 H 0.154 0.846 32 H 0.145 0.855 33 H 0.121 0.879 34 H 0.111 0.889 35 H 0.132 0.868 36 H 0.254 0.746 37 H 0.249 0.751 38 H 0.056 0.944 39 H 0.061 0.939 40 H 0.092 0.908 41 H 0.073 0.927 42 H 0.055 0.945 43 H 0.052 0.948 44 H 0.074 0.926 45 H 0.091 0.909 46 H 0.002 0.998 47 H 0.004 0.996 48 H 0.067 0.933 49 H 0.069 0.931 50 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -30.501 6.696 -15.370 34.805 hybrid contribution 1.401 -1.259 0.157 1.890 sum -29.100 5.437 -15.213 33.284 Atomic orbital electron populations 1.22810 0.69603 1.08129 1.06806 1.47287 1.10828 1.03817 1.44955 1.78494 0.96130 1.12982 1.23598 1.74752 1.10821 1.13904 1.17843 1.21842 0.96393 0.90904 1.08877 1.22424 0.90067 0.94080 1.07804 1.20364 0.99476 0.82253 1.05312 1.21864 0.90961 1.01744 1.00569 1.20793 0.86127 0.85852 1.00734 0.91333 1.44845 1.25720 1.46245 1.20989 1.16204 0.80369 0.80106 0.83561 1.90917 1.78955 1.52372 1.30024 1.44972 1.25222 1.44975 1.22698 1.21015 0.87532 0.97905 0.89854 1.20710 0.94073 0.94752 0.96924 1.21679 0.99510 0.95772 1.00718 1.21686 1.00294 1.00186 0.95632 1.18986 0.92898 0.94998 0.93045 1.21639 1.07620 1.22407 1.03215 0.90731 1.25985 1.00588 0.98767 0.95149 1.70141 1.31391 1.45008 1.11544 0.85467 0.78529 0.78599 0.78865 1.17846 1.21261 1.21107 1.20323 0.92307 0.92843 1.02653 0.87468 0.87314 0.84597 0.85476 0.87886 0.88860 0.86832 0.74571 0.75085 0.94356 0.93924 0.90819 0.92659 0.94474 0.94765 0.92603 0.90903 0.99814 0.99582 0.93258 0.93071 0.88819 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.18 11.27 127.77 1.44 1.62 16 2 N -0.28 -4.31 3.73 -356.42 -1.33 -5.64 16 3 N -0.13 -3.45 13.19 37.02 0.49 -2.96 16 4 N -0.31 -9.33 12.40 -48.99 -0.61 -9.94 16 5 C -0.04 -0.90 7.11 41.75 0.30 -0.60 16 6 C -0.01 -0.12 6.76 41.50 0.28 0.16 16 7 C -0.03 -0.16 5.97 29.94 0.18 0.02 16 8 C -0.11 -0.64 5.37 30.78 0.17 -0.47 16 9 C 0.17 2.81 2.43 45.20 0.11 2.92 16 10 H 0.07 1.52 7.55 -2.39 -0.02 1.50 16 11 N -0.72 -12.15 5.08 -456.79 -2.32 -14.47 16 12 C 0.70 19.57 8.53 179.06 1.53 21.10 16 13 O -0.64 -25.22 16.01 -4.01 -0.06 -25.28 16 14 N -0.72 -18.92 4.96 -478.53 -2.37 -21.29 16 15 C 0.16 5.79 4.56 86.38 0.39 6.19 16 16 C -0.06 -2.38 0.54 -52.18 -0.03 -2.41 16 17 C -0.12 -3.83 8.05 71.98 0.58 -3.25 16 18 C -0.12 -3.97 8.05 71.98 0.58 -3.39 16 19 C 0.04 1.96 4.04 29.85 0.12 2.08 16 20 C -0.51 -27.26 7.65 25.60 0.20 -27.07 16 21 H 0.07 3.70 5.68 -2.91 -0.02 3.68 16 22 C -0.01 -0.47 5.46 84.66 0.46 -0.01 16 23 N -0.94 -57.51 13.29 21.45 0.28 -57.23 16 24 Si 0.96 43.57 29.54 68.60 2.03 45.59 16 25 H -0.25 -10.70 7.11 99.48 0.71 -9.99 16 26 H -0.29 -12.96 7.11 99.48 0.71 -12.26 16 27 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 28 C -0.04 -0.89 5.88 29.99 0.18 -0.71 16 29 H 0.11 0.04 8.14 -2.39 -0.02 0.02 16 30 H 0.11 0.19 8.14 -2.39 -0.02 0.17 16 31 H 0.14 -0.64 7.72 -2.39 -0.02 -0.66 16 32 H 0.13 -0.33 7.87 -2.39 -0.02 -0.35 16 33 H 0.10 0.33 8.14 -2.39 -0.02 0.31 16 34 H 0.09 0.32 8.11 -2.39 -0.02 0.30 16 35 H 0.11 0.18 8.14 -2.39 -0.02 0.16 16 36 H 0.42 3.62 8.61 -92.71 -0.80 2.82 16 37 H 0.41 7.73 6.18 -92.71 -0.57 7.16 16 38 H 0.04 1.54 8.14 -2.38 -0.02 1.53 16 39 H 0.04 1.68 8.14 -2.39 -0.02 1.66 16 40 H 0.07 1.69 6.86 -2.38 -0.02 1.67 16 41 H 0.05 1.91 6.62 -2.39 -0.02 1.89 16 42 H 0.04 1.26 8.14 -2.39 -0.02 1.24 16 43 H 0.03 1.20 8.14 -2.39 -0.02 1.18 16 44 H 0.05 1.96 6.62 -2.39 -0.02 1.95 16 45 H 0.07 1.74 6.86 -2.39 -0.02 1.72 16 46 H -0.02 -0.95 8.14 -2.39 -0.02 -0.97 16 47 H -0.01 -0.81 8.14 -2.39 -0.02 -0.83 16 48 H 0.26 15.01 8.31 -92.70 -0.77 14.24 16 49 H 0.05 1.52 8.14 -2.39 -0.02 1.50 16 50 H 0.09 1.78 8.14 -2.39 -0.02 1.76 16 Total: -1.00 -87.90 395.88 2.17 -85.73 By element: Atomic # 1 Polarization: 9.71 SS G_CDS: -0.41 Total: 9.30 kcal Atomic # 6 Polarization: -10.31 SS G_CDS: 6.48 Total: -3.83 kcal Atomic # 7 Polarization: -105.66 SS G_CDS: -5.86 Total: -111.52 kcal Atomic # 8 Polarization: -25.22 SS G_CDS: -0.06 Total: -25.28 kcal Atomic # 14 Polarization: 43.57 SS G_CDS: 2.03 Total: 45.59 kcal Total: -87.90 2.17 -85.73 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594242917.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.199 kcal (2) G-P(sol) polarization free energy of solvation -87.904 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.294 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.171 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.734 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.465 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds