Wall clock time and date at job start Tue Mar 31 2020 20:31:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 N 1.29104 * 126.00639 * 2 1 4 4 N 1.29023 * 110.25848 * 180.02562 * 3 2 1 5 5 C 1.32907 * 108.63464 * 0.02562 * 4 3 2 6 6 C 1.34402 * 126.00630 * 179.97438 * 2 1 3 7 7 C 1.50534 * 129.25555 * 359.85391 * 6 2 1 8 8 C 1.53436 * 108.32150 * 196.44728 * 7 6 2 9 9 C 1.53106 * 109.55151 * 310.27608 * 8 7 6 10 10 H 1.09003 * 109.45528 * 310.06241 * 9 8 7 11 11 N 1.46501 * 109.45766 * 190.10478 * 9 8 7 12 12 C 1.34764 * 120.00153 * 155.00138 * 11 9 8 13 13 O 1.21591 * 120.00370 * 359.97438 * 12 11 9 14 14 N 1.34779 * 120.00337 * 180.02562 * 12 11 9 15 15 C 1.46492 * 120.00559 * 180.02562 * 14 12 11 16 16 C 1.53006 * 109.47363 * 180.02562 * 15 14 12 17 17 C 1.52997 * 109.47127 * 59.99700 * 16 15 14 18 18 C 1.52999 * 109.46623 * 299.99764 * 16 15 14 19 19 C 1.52992 * 109.47223 * 180.02562 * 16 15 14 20 20 C 1.50696 * 109.47490 * 179.97438 * 19 16 15 21 21 H 1.08003 * 119.99760 * 359.97438 * 20 19 16 22 22 C 1.37877 * 120.00724 * 179.97438 * 20 19 16 23 23 N 1.31511 * 119.99375 * 0.02562 * 22 20 19 24 24 Si 1.86800 * 120.00192 * 179.97438 * 22 20 19 25 25 H 1.48496 * 109.47209 * 90.00261 * 24 22 20 26 26 H 1.48501 * 109.46755 * 210.00214 * 24 22 20 27 27 H 1.48499 * 109.47293 * 330.00224 * 24 22 20 28 28 C 1.50598 * 129.16210 * 179.79587 * 5 4 3 29 29 H 1.08999 * 109.47268 * 270.02844 * 1 2 3 30 30 H 1.09004 * 109.47105 * 30.03074 * 1 2 3 31 31 H 1.09006 * 109.46786 * 150.02641 * 1 2 3 32 32 H 1.09000 * 109.69179 * 76.73959 * 7 6 2 33 33 H 1.09004 * 109.69392 * 316.15153 * 7 6 2 34 34 H 1.09004 * 109.45238 * 190.25733 * 8 7 6 35 35 H 1.08990 * 109.44689 * 70.29551 * 8 7 6 36 36 H 0.97003 * 119.99132 * 335.00056 * 11 9 8 37 37 H 0.97009 * 119.99396 * 359.97438 * 14 12 11 38 38 H 1.09000 * 109.47152 * 59.99958 * 15 14 12 39 39 H 1.09001 * 109.47164 * 300.00062 * 15 14 12 40 40 H 1.09002 * 109.47153 * 180.02562 * 17 16 15 41 41 H 1.09001 * 109.46832 * 60.00321 * 17 16 15 42 42 H 1.09004 * 109.47261 * 300.00303 * 17 16 15 43 43 H 1.09002 * 109.46716 * 179.97438 * 18 16 15 44 44 H 1.09000 * 109.47486 * 299.99829 * 18 16 15 45 45 H 1.09001 * 109.47362 * 60.00551 * 18 16 15 46 46 H 1.09001 * 109.47066 * 299.99881 * 19 16 15 47 47 H 1.08996 * 109.47747 * 59.99547 * 19 16 15 48 48 H 0.97010 * 119.99617 * 179.97438 * 23 22 20 49 49 H 1.09002 * 109.69337 * 76.87699 * 28 5 4 50 50 H 1.09000 * 109.68962 * 316.29468 * 28 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2240 1.0444 0.0000 4 7 3.4658 0.6942 -0.0005 5 6 3.5327 -0.6332 -0.0015 6 6 2.2551 -1.0872 0.0005 7 6 1.8722 -2.5431 0.0041 8 6 3.1013 -3.3641 0.4156 9 6 4.3084 -2.9347 -0.4227 10 1 4.0357 -2.9340 -1.4781 11 7 5.4124 -3.8727 -0.2048 12 6 6.3615 -4.0274 -1.1489 13 8 6.3013 -3.3889 -2.1820 14 7 7.3770 -4.8907 -0.9487 15 6 8.4090 -5.0586 -1.9747 16 6 9.4361 -6.0890 -1.5013 17 6 8.7388 -7.4285 -1.2555 18 6 10.0828 -5.6046 -0.2021 19 6 10.5143 -6.2638 -2.5726 20 6 11.5263 -7.2783 -2.1062 21 1 11.4122 -7.7508 -1.1417 22 6 12.5980 -7.6033 -2.9104 23 7 12.7372 -7.0276 -4.0846 24 14 13.8528 -8.8603 -2.3317 25 1 13.4327 -10.2161 -2.7680 26 1 15.1796 -8.5408 -2.9172 27 1 13.9437 -8.8230 -0.8500 28 6 4.7468 -1.5242 -0.0065 29 1 -0.3634 0.0005 1.0276 30 1 -0.3633 0.8897 -0.5143 31 1 -0.3633 -0.8903 -0.5135 32 1 1.5490 -2.8403 -0.9935 33 1 1.0644 -2.7086 0.7171 34 1 2.9026 -4.4230 0.2501 35 1 3.3138 -3.1952 1.4711 36 1 5.4602 -4.3823 0.6192 37 1 7.4248 -5.4004 -0.1247 38 1 8.9055 -4.1042 -2.1502 39 1 7.9484 -5.4040 -2.9003 40 1 9.4705 -8.1625 -0.9177 41 1 8.2781 -7.7735 -2.1811 42 1 7.9709 -7.3036 -0.4920 43 1 10.8142 -6.3389 0.1355 44 1 10.5796 -4.6504 -0.3772 45 1 9.3150 -5.4798 0.5615 46 1 10.0539 -6.6087 -3.4985 47 1 11.0110 -5.3095 -2.7475 48 1 13.4914 -7.2559 -4.6504 49 1 5.1846 -1.5542 0.9912 50 1 5.4791 -1.1430 -0.7182 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594242918.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:31:47 Heat of formation + Delta-G solvation = 20.565040 kcal Electronic energy + Delta-G solvation = -28807.290795 eV Core-core repulsion = 24869.854673 eV Total energy + Delta-G solvation = -3937.436121 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -44.42459 -41.20748 -39.09412 -38.02546 -35.89586 -35.20630 -34.68349 -33.72166 -31.30867 -30.37400 -29.00291 -28.63759 -27.90744 -27.41817 -25.32224 -24.63710 -23.47797 -22.36681 -21.80320 -20.89690 -20.08639 -18.91885 -18.34395 -18.10746 -17.83502 -17.10400 -16.62473 -16.47642 -15.95471 -15.55350 -15.40378 -15.19990 -14.90037 -14.81740 -14.60117 -14.57946 -14.30613 -14.03511 -13.89958 -13.79227 -13.61446 -13.17560 -13.01303 -12.84271 -12.70518 -12.67954 -12.53558 -12.29226 -12.24985 -12.19157 -11.94516 -11.87497 -11.60496 -11.48978 -11.34167 -10.94594 -10.92846 -10.81843 -10.49033 -10.33468 -9.89899 -9.71369 -8.11557 -6.19341 0.56135 1.43462 1.44145 1.44913 1.49698 1.55128 1.74303 2.22400 2.46290 3.13402 3.22876 3.38190 3.65484 3.77293 3.82099 3.83516 4.03168 4.14367 4.17492 4.26170 4.27985 4.31951 4.45182 4.56367 4.61502 4.71841 4.73664 4.78872 4.79991 4.88331 4.92557 4.98181 5.02363 5.12204 5.16190 5.17580 5.23569 5.25621 5.45666 5.53084 5.54678 5.57604 5.58928 5.64113 5.68623 5.85123 5.93016 6.10748 6.33868 6.96079 7.21527 7.45030 7.48308 7.68087 9.00940 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.036143 B = 0.001823 C = 0.001792 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 774.506124 B =15351.735716 C =15620.392655 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.065 3.935 2 N -0.276 5.276 3 N -0.134 5.134 4 N -0.310 5.310 5 C -0.038 4.038 6 C -0.008 4.008 7 C -0.035 4.035 8 C -0.113 4.113 9 C 0.171 3.829 10 H 0.069 0.931 11 N -0.722 5.722 12 C 0.698 3.302 13 O -0.641 6.641 14 N -0.722 5.722 15 C 0.162 3.838 16 C -0.064 4.064 17 C -0.120 4.120 18 C -0.121 4.121 19 C 0.039 3.961 20 C -0.512 4.512 21 H 0.074 0.926 22 C -0.008 4.008 23 N -0.939 5.939 24 Si 0.960 3.040 25 H -0.275 1.275 26 H -0.292 1.292 27 H -0.259 1.259 28 C -0.041 4.041 29 H 0.114 0.886 30 H 0.105 0.895 31 H 0.131 0.869 32 H 0.104 0.896 33 H 0.126 0.874 34 H 0.113 0.887 35 H 0.092 0.908 36 H 0.417 0.583 37 H 0.411 0.589 38 H 0.038 0.962 39 H 0.042 0.958 40 H 0.055 0.945 41 H 0.036 0.964 42 H 0.073 0.927 43 H 0.055 0.945 44 H 0.033 0.967 45 H 0.072 0.928 46 H -0.014 1.014 47 H -0.017 1.017 48 H 0.259 0.741 49 H 0.093 0.907 50 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.517 4.556 16.282 34.888 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 N -0.069 5.069 3 N -0.112 5.112 4 N -0.173 5.173 5 C -0.180 4.180 6 C -0.144 4.144 7 C -0.074 4.074 8 C -0.151 4.151 9 C 0.065 3.935 10 H 0.087 0.913 11 N -0.378 5.378 12 C 0.398 3.602 13 O -0.523 6.523 14 N -0.379 5.379 15 C 0.037 3.963 16 C -0.065 4.065 17 C -0.177 4.177 18 C -0.178 4.178 19 C 0.001 3.999 20 C -0.550 4.550 21 H 0.092 0.908 22 C -0.205 4.205 23 N -0.580 5.580 24 Si 0.785 3.215 25 H -0.201 1.201 26 H -0.218 1.218 27 H -0.183 1.183 28 C -0.081 4.081 29 H 0.133 0.867 30 H 0.124 0.876 31 H 0.150 0.850 32 H 0.122 0.878 33 H 0.144 0.856 34 H 0.132 0.868 35 H 0.111 0.889 36 H 0.254 0.746 37 H 0.249 0.751 38 H 0.057 0.943 39 H 0.061 0.939 40 H 0.074 0.926 41 H 0.055 0.945 42 H 0.092 0.908 43 H 0.074 0.926 44 H 0.052 0.948 45 H 0.091 0.909 46 H 0.004 0.996 47 H 0.002 0.998 48 H 0.067 0.933 49 H 0.111 0.889 50 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -30.481 6.737 15.220 34.729 hybrid contribution 1.390 -1.270 -0.109 1.886 sum -29.091 5.467 15.111 33.235 Atomic orbital electron populations 1.22811 0.69594 1.07875 1.07074 1.47291 1.10830 1.03813 1.44965 1.78490 0.96132 1.12987 1.23569 1.74752 1.10820 1.13900 1.17859 1.21839 0.96392 0.90908 1.08864 1.22425 0.90060 0.94073 1.07814 1.20363 0.99488 0.82258 1.05328 1.21858 0.90953 1.01756 1.00541 1.20780 0.86127 0.85838 1.00761 0.91305 1.44844 1.25682 1.46423 1.20845 1.16200 0.80354 0.80099 0.83581 1.90916 1.78950 1.52466 1.29929 1.44975 1.25213 1.45017 1.22671 1.21014 0.87524 0.97892 0.89870 1.20708 0.94075 0.94753 0.96920 1.21678 0.99510 0.95775 1.00718 1.21687 1.00284 1.00180 0.95640 1.18978 0.92875 0.95000 0.93039 1.21604 1.07666 1.22501 1.03213 0.90765 1.25980 1.00568 0.98747 0.95162 1.70136 1.31429 1.44908 1.11565 0.85520 0.77878 0.79064 0.79013 1.20105 1.21776 1.18270 1.20316 0.92319 0.92850 1.02658 0.86723 0.87595 0.85041 0.87803 0.85554 0.86824 0.88910 0.74576 0.75088 0.94349 0.93930 0.92640 0.94484 0.90813 0.92625 0.94773 0.90908 0.99600 0.99815 0.93260 0.88859 0.93042 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.18 11.27 127.77 1.44 1.62 16 2 N -0.28 -4.31 3.73 -356.39 -1.33 -5.64 16 3 N -0.13 -3.44 13.19 37.02 0.49 -2.95 16 4 N -0.31 -9.33 12.40 -48.99 -0.61 -9.94 16 5 C -0.04 -0.90 7.11 41.75 0.30 -0.60 16 6 C -0.01 -0.12 6.76 41.50 0.28 0.16 16 7 C -0.03 -0.16 5.94 29.94 0.18 0.02 16 8 C -0.11 -0.64 5.37 30.78 0.17 -0.48 16 9 C 0.17 2.80 2.43 45.18 0.11 2.91 16 10 H 0.07 1.52 7.55 -2.39 -0.02 1.51 16 11 N -0.72 -12.15 5.08 -456.91 -2.32 -14.47 16 12 C 0.70 19.57 8.53 179.06 1.53 21.10 16 13 O -0.64 -25.20 16.01 -4.00 -0.06 -25.26 16 14 N -0.72 -18.93 4.96 -478.54 -2.37 -21.30 16 15 C 0.16 5.80 4.56 86.38 0.39 6.19 16 16 C -0.06 -2.38 0.54 -52.18 -0.03 -2.41 16 17 C -0.12 -3.83 8.05 71.98 0.58 -3.25 16 18 C -0.12 -3.97 8.05 71.98 0.58 -3.39 16 19 C 0.04 1.97 4.04 29.84 0.12 2.09 16 20 C -0.51 -27.32 7.65 25.60 0.20 -27.13 16 21 H 0.07 3.68 5.68 -2.91 -0.02 3.66 16 22 C -0.01 -0.45 5.46 84.66 0.46 0.02 16 23 N -0.94 -57.48 13.29 21.45 0.28 -57.20 16 24 Si 0.96 43.55 29.54 68.60 2.03 45.57 16 25 H -0.28 -12.13 7.11 99.48 0.71 -11.42 16 26 H -0.29 -13.33 7.11 99.48 0.71 -12.62 16 27 H -0.26 -10.97 7.11 99.48 0.71 -10.27 16 28 C -0.04 -0.89 5.88 29.97 0.18 -0.72 16 29 H 0.11 -0.15 8.14 -2.39 -0.02 -0.17 16 30 H 0.11 0.26 8.14 -2.38 -0.02 0.24 16 31 H 0.13 -0.48 7.96 -2.38 -0.02 -0.50 16 32 H 0.10 0.31 8.14 -2.39 -0.02 0.29 16 33 H 0.13 -0.28 8.14 -2.38 -0.02 -0.30 16 34 H 0.11 0.18 8.14 -2.39 -0.02 0.16 16 35 H 0.09 0.33 8.11 -2.39 -0.02 0.31 16 36 H 0.42 3.63 8.62 -92.71 -0.80 2.83 16 37 H 0.41 7.73 6.18 -92.70 -0.57 7.16 16 38 H 0.04 1.55 8.14 -2.39 -0.02 1.53 16 39 H 0.04 1.68 8.14 -2.39 -0.02 1.66 16 40 H 0.05 1.91 6.62 -2.39 -0.02 1.90 16 41 H 0.04 1.25 8.14 -2.39 -0.02 1.23 16 42 H 0.07 1.69 6.86 -2.38 -0.02 1.68 16 43 H 0.05 1.96 6.62 -2.39 -0.02 1.95 16 44 H 0.03 1.20 8.14 -2.39 -0.02 1.18 16 45 H 0.07 1.74 6.86 -2.39 -0.02 1.73 16 46 H -0.01 -0.82 8.14 -2.39 -0.02 -0.84 16 47 H -0.02 -0.95 8.14 -2.39 -0.02 -0.97 16 48 H 0.26 15.05 8.31 -92.70 -0.77 14.28 16 49 H 0.09 1.78 8.14 -2.39 -0.02 1.76 16 50 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16 Total: -1.00 -87.74 396.37 2.17 -85.57 By element: Atomic # 1 Polarization: 9.88 SS G_CDS: -0.41 Total: 9.47 kcal Atomic # 6 Polarization: -10.34 SS G_CDS: 6.48 Total: -3.87 kcal Atomic # 7 Polarization: -105.63 SS G_CDS: -5.86 Total: -111.49 kcal Atomic # 8 Polarization: -25.20 SS G_CDS: -0.06 Total: -25.26 kcal Atomic # 14 Polarization: 43.55 SS G_CDS: 2.03 Total: 45.57 kcal Total: -87.74 2.17 -85.57 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594242918.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.137 kcal (2) G-P(sol) polarization free energy of solvation -87.740 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.397 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.168 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.571 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.565 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds