Wall clock time and date at job start Tue Mar 31 2020 20:50:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52998 * 109.47162 * 2 1 4 4 C 1.53001 * 109.46755 * 120.00065 * 2 1 3 5 5 H 1.08992 * 109.47385 * 59.99979 * 4 2 1 6 6 N 1.46501 * 109.46774 * 299.99722 * 4 2 1 7 7 C 1.34771 * 120.00014 * 85.00933 * 6 4 2 8 8 O 1.21578 * 120.00228 * 5.44344 * 7 6 4 9 9 N 1.34779 * 120.00028 * 185.17334 * 7 6 4 10 10 C 1.46924 * 120.62977 * 355.09141 * 9 7 6 11 11 C 1.53196 * 108.77607 * 233.58263 * 10 9 7 12 12 C 1.53038 * 109.31147 * 305.36365 * 11 10 9 13 13 C 1.53046 * 109.53548 * 61.36629 * 12 11 10 14 14 H 1.08999 * 109.49505 * 58.58277 * 13 12 11 15 15 C 1.50701 * 109.49645 * 178.64725 * 13 12 11 16 16 H 1.08003 * 119.99775 * 0.02562 * 15 13 12 17 17 C 1.37875 * 120.00267 * 179.97438 * 15 13 12 18 18 N 1.31520 * 119.99752 * 0.02562 * 17 15 13 19 19 Si 1.86800 * 120.00234 * 179.97438 * 17 15 13 20 20 H 1.48497 * 109.46895 * 60.00130 * 19 17 15 21 21 H 1.48501 * 109.46877 * 179.97438 * 19 17 15 22 22 H 1.48492 * 109.47068 * 299.99951 * 19 17 15 23 23 C 1.46927 * 120.63149 * 174.80786 * 9 7 6 24 24 C 1.50706 * 109.46703 * 180.02562 * 4 2 1 25 25 N 1.30521 * 126.34569 * 74.68697 * 24 4 2 26 26 N 1.28593 * 109.66955 * 179.82119 * 25 24 4 27 27 C 1.30514 * 109.67429 * 0.45138 * 26 25 24 28 28 N 1.35484 * 126.34482 * 254.99688 * 24 4 2 29 29 C 1.46502 * 126.98142 * 359.97438 * 28 24 4 30 30 H 1.09000 * 109.47541 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.47127 * 300.00664 * 1 2 3 32 32 H 1.09007 * 109.46962 * 59.99712 * 1 2 3 33 33 H 1.08993 * 109.46931 * 239.99895 * 2 1 3 34 34 H 1.08997 * 109.46977 * 179.97438 * 3 2 1 35 35 H 1.09007 * 109.47006 * 300.00357 * 3 2 1 36 36 H 1.09002 * 109.47642 * 59.99651 * 3 2 1 37 37 H 0.97007 * 119.99671 * 264.99945 * 6 4 2 38 38 H 1.09000 * 109.59000 * 353.37763 * 10 9 7 39 39 H 1.09011 * 109.58853 * 113.79545 * 10 9 7 40 40 H 1.08996 * 109.49126 * 65.32008 * 11 10 9 41 41 H 1.08999 * 109.49634 * 185.41241 * 11 10 9 42 42 H 1.08999 * 109.45878 * 181.38002 * 12 11 10 43 43 H 1.08999 * 109.46196 * 301.34494 * 12 11 10 44 44 H 0.96991 * 119.99924 * 179.97438 * 18 17 15 45 45 H 1.09001 * 109.58809 * 246.20714 * 23 9 7 46 46 H 1.09001 * 109.58601 * 6.63259 * 23 9 7 47 47 H 1.08006 * 126.35385 * 179.72993 * 27 26 25 48 48 H 1.09010 * 109.46740 * 90.00034 * 29 28 24 49 49 H 1.08993 * 109.47462 * 210.00042 * 29 28 24 50 50 H 1.08996 * 109.47277 * 330.00411 * 29 28 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2493 5 1 1.6766 -1.7489 1.2493 6 7 1.5516 -0.0306 2.4454 7 6 0.3297 -0.3164 2.9369 8 8 -0.3269 -1.2156 2.4486 9 7 -0.1622 0.3911 3.9733 10 6 0.6622 1.4037 4.6467 11 6 0.6801 1.1053 6.1493 12 6 -0.7581 1.0207 6.6656 13 6 -1.4906 -0.1199 5.9553 14 1 -0.9638 -1.0573 6.1335 15 6 -2.8964 -0.2238 6.4882 16 1 -3.2343 0.4560 7.2565 17 6 -3.7517 -1.1858 5.9942 18 7 -3.3404 -2.0132 5.0583 19 14 -5.4940 -1.3150 6.6553 20 1 -6.2117 -0.0379 6.4119 21 1 -6.2047 -2.4210 5.9647 22 1 -5.4509 -1.5883 8.1142 23 6 -1.5351 0.1686 4.4471 24 6 3.5470 -0.7207 1.2496 25 7 4.3201 0.2965 1.5164 26 7 5.5521 -0.0610 1.4267 27 6 5.6209 -1.3199 1.0892 28 7 4.3504 -1.7745 0.9672 29 6 3.9306 -3.1303 0.6042 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8899 32 1 -0.3633 0.5139 -0.8900 33 1 1.8933 -0.5138 -0.8899 34 1 3.1300 1.4424 0.0005 35 1 1.6766 1.9563 -0.8900 36 1 1.6767 1.9564 0.8899 37 1 2.1078 0.6324 2.8836 38 1 1.6786 1.3673 4.2547 39 1 0.2378 2.3932 4.4758 40 1 1.1865 0.1563 6.3255 41 1 1.2081 1.9026 6.6722 42 1 -0.7479 0.8328 7.7392 43 1 -1.2713 1.9615 6.4667 44 1 -3.9419 -2.6903 4.7111 45 1 -2.1350 1.0592 4.2601 46 1 -1.9689 -0.6832 3.9233 47 1 6.5233 -1.8931 0.9357 48 1 3.8263 -3.2007 -0.4786 49 1 4.6792 -3.8458 0.9443 50 1 2.9740 -3.3532 1.0766 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595616350.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:50:14 Heat of formation + Delta-G solvation = 54.631104 kcal Electronic energy + Delta-G solvation = -30951.489822 eV Core-core repulsion = 27015.530916 eV Total energy + Delta-G solvation = -3935.958906 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 4.72 seconds Orbital eigenvalues (eV) -43.37501 -40.00155 -37.55684 -35.99929 -35.27518 -33.57021 -32.56440 -31.62071 -30.83099 -29.63184 -28.00388 -26.95541 -26.67515 -25.01785 -24.15111 -22.56189 -21.79708 -21.56738 -20.43078 -19.40079 -18.88085 -17.77930 -17.10923 -16.62949 -16.27039 -16.07398 -15.46884 -15.07478 -14.65320 -14.50464 -14.18761 -14.00662 -13.71268 -13.67669 -13.32795 -13.25407 -13.10504 -12.74896 -12.52667 -12.20774 -12.01915 -11.89337 -11.80462 -11.68594 -11.35252 -10.96528 -10.90344 -10.78795 -10.71717 -10.54283 -10.50302 -10.39246 -10.34794 -10.20014 -9.83906 -9.50771 -9.36043 -9.06251 -8.92959 -8.77564 -8.39574 -7.62220 -5.96211 -4.04895 1.53407 2.16463 2.66572 3.23808 3.34343 3.39283 3.40982 3.77057 3.98925 4.27039 4.34452 4.40767 4.48121 4.67997 4.80244 4.84458 5.03370 5.10554 5.19100 5.33110 5.36144 5.47169 5.55358 5.61420 5.68989 5.74761 5.84193 5.86111 6.04047 6.08281 6.13110 6.18712 6.22245 6.35810 6.43703 6.54893 6.62220 6.64477 6.70233 6.75264 6.84568 7.02189 7.07410 7.36423 7.52479 7.77001 7.95550 8.08163 8.43659 8.52400 8.58883 8.98216 9.23879 9.60220 11.08651 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.016631 B = 0.003230 C = 0.003080 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1683.182551 B = 8666.790673 C = 9087.841581 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.097 4.097 3 C -0.146 4.146 4 C 0.259 3.741 5 H 0.102 0.898 6 N -0.743 5.743 7 C 0.705 3.295 8 O -0.579 6.579 9 N -0.620 5.620 10 C 0.114 3.886 11 C -0.133 4.133 12 C -0.110 4.110 13 C 0.040 3.960 14 H 0.028 0.972 15 C -0.521 4.521 16 H 0.057 0.943 17 C 0.063 3.937 18 N -0.879 5.879 19 Si 0.891 3.109 20 H -0.277 1.277 21 H -0.287 1.287 22 H -0.278 1.278 23 C 0.130 3.870 24 C 0.175 3.825 25 N -0.281 5.281 26 N -0.297 5.297 27 C 0.147 3.853 28 N -0.470 5.470 29 C 0.066 3.934 30 H 0.065 0.935 31 H 0.063 0.937 32 H 0.048 0.952 33 H 0.070 0.930 34 H 0.064 0.936 35 H 0.050 0.950 36 H 0.059 0.941 37 H 0.400 0.600 38 H 0.062 0.938 39 H 0.062 0.938 40 H 0.058 0.942 41 H 0.058 0.942 42 H 0.050 0.950 43 H 0.049 0.951 44 H 0.263 0.737 45 H 0.039 0.961 46 H 0.123 0.877 47 H 0.219 0.781 48 H 0.086 0.914 49 H 0.095 0.905 50 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.934 0.425 -11.039 19.389 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.118 4.118 3 C -0.204 4.204 4 C 0.150 3.850 5 H 0.120 0.880 6 N -0.404 5.404 7 C 0.407 3.593 8 O -0.457 6.457 9 N -0.356 5.356 10 C -0.010 4.010 11 C -0.171 4.171 12 C -0.147 4.147 13 C 0.021 3.979 14 H 0.046 0.954 15 C -0.560 4.560 16 H 0.075 0.925 17 C -0.139 4.139 18 N -0.516 5.516 19 Si 0.719 3.281 20 H -0.203 1.203 21 H -0.213 1.213 22 H -0.204 1.204 23 C 0.010 3.990 24 C -0.093 4.093 25 N -0.122 5.122 26 N -0.136 5.136 27 C -0.141 4.141 28 N -0.161 5.161 29 C -0.076 4.076 30 H 0.084 0.916 31 H 0.082 0.918 32 H 0.067 0.933 33 H 0.088 0.912 34 H 0.083 0.917 35 H 0.069 0.931 36 H 0.078 0.922 37 H 0.237 0.763 38 H 0.080 0.920 39 H 0.080 0.920 40 H 0.077 0.923 41 H 0.077 0.923 42 H 0.069 0.931 43 H 0.068 0.932 44 H 0.073 0.927 45 H 0.058 0.942 46 H 0.141 0.859 47 H 0.235 0.765 48 H 0.104 0.896 49 H 0.113 0.887 50 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 15.784 0.975 -11.133 19.340 hybrid contribution -0.804 -1.221 0.228 1.480 sum 14.980 -0.246 -10.905 18.531 Atomic orbital electron populations 1.21821 0.92927 1.03003 1.01667 1.21482 0.97516 0.97244 0.95539 1.21852 1.01701 0.95081 1.01732 1.18874 0.80952 0.98647 0.86567 0.88021 1.45220 1.18398 1.46339 1.30413 1.15788 0.80714 0.82240 0.80524 1.90923 1.59509 1.32319 1.62922 1.47774 1.16661 1.39104 1.32042 1.21520 0.93923 0.92066 0.93526 1.21937 0.99407 1.00995 0.94778 1.21616 0.93067 1.00500 0.99545 1.19048 0.95269 0.93115 0.90458 0.95362 1.21051 0.96716 1.16488 1.21754 0.92497 1.25042 0.98478 0.95464 0.94961 1.69895 1.35794 1.18759 1.27138 0.86678 0.84772 0.77630 0.79033 1.20267 1.21302 1.20354 1.22270 0.76588 1.01947 0.98229 1.24942 0.96727 0.84405 1.03267 1.74220 0.96222 1.23125 1.18659 1.74258 1.12377 1.09650 1.17334 1.26447 0.88480 0.94527 1.04599 1.46165 1.07019 1.11889 1.51012 1.22232 1.03532 0.79174 1.02706 0.91640 0.91843 0.93335 0.91184 0.91731 0.93111 0.92174 0.76265 0.92013 0.92009 0.92323 0.92289 0.93140 0.93182 0.92705 0.94248 0.85879 0.76510 0.89556 0.88676 0.88462 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.95 7.79 37.16 0.29 -1.66 16 2 C -0.10 -1.19 2.79 -90.62 -0.25 -1.45 16 3 C -0.15 -1.79 8.66 37.16 0.32 -1.47 16 4 C 0.26 3.43 2.41 -69.08 -0.17 3.27 16 5 H 0.10 1.40 6.26 -51.93 -0.33 1.08 16 6 N -0.74 -11.44 4.10 -59.81 -0.25 -11.69 16 7 C 0.71 13.75 6.45 -86.92 -0.56 13.19 16 8 O -0.58 -13.24 13.33 5.30 0.07 -13.17 16 9 N -0.62 -12.34 2.97 -178.23 -0.53 -12.87 16 10 C 0.11 1.84 6.39 -3.71 -0.02 1.81 16 11 C -0.13 -2.21 6.08 -26.61 -0.16 -2.37 16 12 C -0.11 -2.20 5.10 -26.69 -0.14 -2.34 16 13 C 0.04 1.00 2.26 -91.42 -0.21 0.79 16 14 H 0.03 0.79 8.14 -51.93 -0.42 0.36 16 15 C -0.52 -14.09 8.56 -34.44 -0.29 -14.39 16 16 H 0.06 1.51 7.74 -52.48 -0.41 1.10 16 17 C 0.06 1.75 5.30 -17.82 -0.09 1.65 16 18 N -0.88 -25.36 11.41 55.43 0.63 -24.72 16 19 Si 0.89 21.17 29.54 -169.99 -5.02 16.15 16 20 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 21 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 22 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 23 C 0.13 3.12 5.44 -3.49 -0.02 3.10 16 24 C 0.17 2.16 6.28 -154.99 -0.97 1.19 16 25 N -0.28 -3.98 10.15 32.80 0.33 -3.64 16 26 N -0.30 -3.96 12.21 29.69 0.36 -3.60 16 27 C 0.15 1.37 12.74 -89.95 -1.15 0.22 16 28 N -0.47 -4.42 3.15 -122.69 -0.39 -4.80 16 29 C 0.07 0.36 11.00 59.85 0.66 1.02 16 30 H 0.06 1.01 7.63 -51.93 -0.40 0.62 16 31 H 0.06 1.08 5.86 -51.93 -0.30 0.78 16 32 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 33 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 34 H 0.06 0.83 6.06 -51.93 -0.31 0.52 16 35 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 36 H 0.06 0.79 7.60 -51.93 -0.39 0.40 16 37 H 0.40 5.86 5.85 -40.82 -0.24 5.62 16 38 H 0.06 0.86 5.64 -51.93 -0.29 0.57 16 39 H 0.06 0.93 8.14 -51.92 -0.42 0.51 16 40 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 41 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 42 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 43 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 44 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 45 H 0.04 0.94 8.14 -51.93 -0.42 0.52 16 46 H 0.12 3.43 5.14 -51.93 -0.27 3.16 16 47 H 0.22 0.99 8.06 -52.48 -0.42 0.56 16 48 H 0.09 0.32 8.14 -51.92 -0.42 -0.10 16 49 H 0.09 0.28 8.14 -51.93 -0.42 -0.14 16 50 H 0.10 0.61 7.06 -51.93 -0.37 0.24 16 LS Contribution 384.36 15.07 5.79 5.79 Total: -1.00 -33.36 384.36 -9.69 -43.06 By element: Atomic # 1 Polarization: 14.86 SS G_CDS: -7.94 Total: 6.92 kcal Atomic # 6 Polarization: 5.33 SS G_CDS: -2.77 Total: 2.57 kcal Atomic # 7 Polarization: -61.49 SS G_CDS: 0.17 Total: -61.32 kcal Atomic # 8 Polarization: -13.24 SS G_CDS: 0.07 Total: -13.17 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.15 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -33.36 -9.69 -43.06 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595616350.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.690 kcal (2) G-P(sol) polarization free energy of solvation -33.364 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.326 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.695 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.059 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.631 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.72 seconds