Wall clock time and date at job start Tue Mar 31 2020 20:50:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52998 * 109.47162 * 2 1 4 4 C 1.53001 * 109.46755 * 120.00065 * 2 1 3 5 5 H 1.08992 * 109.47385 * 59.99979 * 4 2 1 6 6 N 1.46501 * 109.46774 * 299.99722 * 4 2 1 7 7 C 1.34771 * 120.00014 * 85.00933 * 6 4 2 8 8 O 1.21578 * 120.00228 * 5.44344 * 7 6 4 9 9 N 1.34779 * 120.00028 * 185.17334 * 7 6 4 10 10 C 1.46924 * 120.62977 * 355.09141 * 9 7 6 11 11 C 1.53196 * 108.77607 * 233.58263 * 10 9 7 12 12 C 1.53038 * 109.31147 * 305.36365 * 11 10 9 13 13 C 1.53046 * 109.53548 * 61.36629 * 12 11 10 14 14 H 1.08999 * 109.49505 * 58.58277 * 13 12 11 15 15 C 1.50701 * 109.49645 * 178.64725 * 13 12 11 16 16 H 1.08003 * 119.99775 * 0.02562 * 15 13 12 17 17 C 1.37875 * 120.00267 * 179.97438 * 15 13 12 18 18 N 1.31520 * 119.99752 * 0.02562 * 17 15 13 19 19 Si 1.86800 * 120.00234 * 179.97438 * 17 15 13 20 20 H 1.48497 * 109.46895 * 60.00130 * 19 17 15 21 21 H 1.48501 * 109.46877 * 179.97438 * 19 17 15 22 22 H 1.48492 * 109.47068 * 299.99951 * 19 17 15 23 23 C 1.46927 * 120.63149 * 174.80786 * 9 7 6 24 24 C 1.50706 * 109.46703 * 180.02562 * 4 2 1 25 25 N 1.30521 * 126.34569 * 74.68697 * 24 4 2 26 26 N 1.28593 * 109.66955 * 179.82119 * 25 24 4 27 27 C 1.30514 * 109.67429 * 0.45138 * 26 25 24 28 28 N 1.35484 * 126.34482 * 254.99688 * 24 4 2 29 29 C 1.46502 * 126.98142 * 359.97438 * 28 24 4 30 30 H 1.09000 * 109.47541 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.47127 * 300.00664 * 1 2 3 32 32 H 1.09007 * 109.46962 * 59.99712 * 1 2 3 33 33 H 1.08993 * 109.46931 * 239.99895 * 2 1 3 34 34 H 1.08997 * 109.46977 * 179.97438 * 3 2 1 35 35 H 1.09007 * 109.47006 * 300.00357 * 3 2 1 36 36 H 1.09002 * 109.47642 * 59.99651 * 3 2 1 37 37 H 0.97007 * 119.99671 * 264.99945 * 6 4 2 38 38 H 1.09000 * 109.59000 * 353.37763 * 10 9 7 39 39 H 1.09011 * 109.58853 * 113.79545 * 10 9 7 40 40 H 1.08996 * 109.49126 * 65.32008 * 11 10 9 41 41 H 1.08999 * 109.49634 * 185.41241 * 11 10 9 42 42 H 1.08999 * 109.45878 * 181.38002 * 12 11 10 43 43 H 1.08999 * 109.46196 * 301.34494 * 12 11 10 44 44 H 0.96991 * 119.99924 * 179.97438 * 18 17 15 45 45 H 1.09001 * 109.58809 * 246.20714 * 23 9 7 46 46 H 1.09001 * 109.58601 * 6.63259 * 23 9 7 47 47 H 1.08006 * 126.35385 * 179.72993 * 27 26 25 48 48 H 1.09010 * 109.46740 * 90.00034 * 29 28 24 49 49 H 1.08993 * 109.47462 * 210.00042 * 29 28 24 50 50 H 1.08996 * 109.47277 * 330.00411 * 29 28 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2493 5 1 1.6766 -1.7489 1.2493 6 7 1.5516 -0.0306 2.4454 7 6 0.3297 -0.3164 2.9369 8 8 -0.3269 -1.2156 2.4486 9 7 -0.1622 0.3911 3.9733 10 6 0.6622 1.4037 4.6467 11 6 0.6801 1.1053 6.1493 12 6 -0.7581 1.0207 6.6656 13 6 -1.4906 -0.1199 5.9553 14 1 -0.9638 -1.0573 6.1335 15 6 -2.8964 -0.2238 6.4882 16 1 -3.2343 0.4560 7.2565 17 6 -3.7517 -1.1858 5.9942 18 7 -3.3404 -2.0132 5.0583 19 14 -5.4940 -1.3150 6.6553 20 1 -6.2117 -0.0379 6.4119 21 1 -6.2047 -2.4210 5.9647 22 1 -5.4509 -1.5883 8.1142 23 6 -1.5351 0.1686 4.4471 24 6 3.5470 -0.7207 1.2496 25 7 4.3201 0.2965 1.5164 26 7 5.5521 -0.0610 1.4267 27 6 5.6209 -1.3199 1.0892 28 7 4.3504 -1.7745 0.9672 29 6 3.9306 -3.1303 0.6042 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8899 32 1 -0.3633 0.5139 -0.8900 33 1 1.8933 -0.5138 -0.8899 34 1 3.1300 1.4424 0.0005 35 1 1.6766 1.9563 -0.8900 36 1 1.6767 1.9564 0.8899 37 1 2.1078 0.6324 2.8836 38 1 1.6786 1.3673 4.2547 39 1 0.2378 2.3932 4.4758 40 1 1.1865 0.1563 6.3255 41 1 1.2081 1.9026 6.6722 42 1 -0.7479 0.8328 7.7392 43 1 -1.2713 1.9615 6.4667 44 1 -3.9419 -2.6903 4.7111 45 1 -2.1350 1.0592 4.2601 46 1 -1.9689 -0.6832 3.9233 47 1 6.5233 -1.8931 0.9357 48 1 3.8263 -3.2007 -0.4786 49 1 4.6792 -3.8458 0.9443 50 1 2.9740 -3.3532 1.0766 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595616350.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:50:10 Heat of formation + Delta-G solvation = 35.060259 kcal Electronic energy + Delta-G solvation = -30952.338478 eV Core-core repulsion = 27015.530916 eV Total energy + Delta-G solvation = -3936.807561 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 3.76 seconds Orbital eigenvalues (eV) -44.20678 -41.47952 -38.99615 -37.43209 -36.00629 -35.37526 -34.09777 -33.15464 -31.88481 -31.35499 -28.61792 -28.03382 -27.81237 -26.91364 -25.72959 -23.45642 -23.35493 -22.49674 -21.88532 -20.65252 -20.38637 -19.16345 -18.33899 -17.89839 -17.46418 -17.33614 -16.84889 -16.48762 -15.93268 -15.72864 -15.50357 -15.28122 -15.20636 -14.83178 -14.50976 -14.40785 -14.24486 -14.18366 -13.83399 -13.77388 -13.52066 -13.06794 -12.85664 -12.83734 -12.72751 -12.66528 -12.40626 -12.26844 -12.22341 -11.92110 -11.81813 -11.77590 -11.61107 -11.39278 -11.14537 -11.11028 -10.93053 -10.82251 -10.48224 -10.36511 -10.10158 -9.25919 -8.06794 -6.23680 0.71990 1.40168 1.43276 1.44838 1.52423 1.77040 1.96296 2.26380 2.44493 2.99263 3.05059 3.21851 3.66987 3.76132 3.85733 3.90934 4.01026 4.11433 4.14537 4.26903 4.28423 4.35359 4.51919 4.60953 4.62510 4.67869 4.73630 4.79029 4.80037 4.85865 4.88020 4.98709 4.99050 5.08592 5.10328 5.13444 5.25341 5.27682 5.33106 5.40640 5.44602 5.50600 5.59302 5.65772 5.87217 5.90813 5.99601 6.16465 6.39082 6.88056 7.10029 7.45558 7.66229 7.71029 8.96159 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.016631 B = 0.003230 C = 0.003080 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1683.182551 B = 8666.790673 C = 9087.841581 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.089 4.089 3 C -0.137 4.137 4 C 0.260 3.740 5 H 0.093 0.907 6 N -0.727 5.727 7 C 0.705 3.295 8 O -0.619 6.619 9 N -0.627 5.627 10 C 0.111 3.889 11 C -0.125 4.125 12 C -0.104 4.104 13 C 0.039 3.961 14 H -0.015 1.015 15 C -0.538 4.538 16 H 0.060 0.940 17 C 0.013 3.987 18 N -0.911 5.911 19 Si 0.955 3.045 20 H -0.268 1.268 21 H -0.288 1.288 22 H -0.270 1.270 23 C 0.147 3.853 24 C 0.161 3.839 25 N -0.305 5.305 26 N -0.342 5.342 27 C 0.169 3.831 28 N -0.467 5.467 29 C 0.059 3.941 30 H 0.046 0.954 31 H 0.031 0.969 32 H 0.065 0.935 33 H 0.093 0.907 34 H 0.060 0.940 35 H 0.063 0.937 36 H 0.047 0.953 37 H 0.405 0.595 38 H 0.087 0.913 39 H 0.080 0.920 40 H 0.046 0.954 41 H 0.100 0.900 42 H 0.050 0.950 43 H 0.058 0.942 44 H 0.259 0.741 45 H 0.034 0.966 46 H 0.081 0.919 47 H 0.265 0.735 48 H 0.107 0.893 49 H 0.126 0.874 50 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.869 1.078 -11.498 21.276 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.110 4.110 3 C -0.195 4.195 4 C 0.152 3.848 5 H 0.111 0.889 6 N -0.386 5.386 7 C 0.407 3.593 8 O -0.500 6.500 9 N -0.363 5.363 10 C -0.012 4.012 11 C -0.163 4.163 12 C -0.141 4.141 13 C 0.020 3.980 14 H 0.003 0.997 15 C -0.577 4.577 16 H 0.078 0.922 17 C -0.187 4.187 18 N -0.549 5.549 19 Si 0.781 3.219 20 H -0.193 1.193 21 H -0.214 1.214 22 H -0.195 1.195 23 C 0.025 3.975 24 C -0.108 4.108 25 N -0.146 5.146 26 N -0.181 5.181 27 C -0.119 4.119 28 N -0.156 5.156 29 C -0.082 4.082 30 H 0.065 0.935 31 H 0.050 0.950 32 H 0.084 0.916 33 H 0.111 0.889 34 H 0.079 0.921 35 H 0.082 0.918 36 H 0.066 0.934 37 H 0.244 0.756 38 H 0.105 0.895 39 H 0.098 0.902 40 H 0.065 0.935 41 H 0.119 0.881 42 H 0.069 0.931 43 H 0.077 0.923 44 H 0.068 0.932 45 H 0.052 0.948 46 H 0.099 0.901 47 H 0.281 0.719 48 H 0.126 0.874 49 H 0.144 0.856 50 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 17.769 1.650 -11.590 21.279 hybrid contribution -1.327 -1.492 0.340 2.025 sum 16.442 0.158 -11.249 19.923 Atomic orbital electron populations 1.21711 0.94502 1.01540 1.00909 1.21434 0.95875 0.97720 0.95975 1.21755 1.01291 0.94690 1.01736 1.18893 0.82035 0.98012 0.85873 0.88893 1.45026 1.16776 1.46071 1.30755 1.15868 0.81525 0.81683 0.80243 1.90893 1.60880 1.34107 1.64075 1.47658 1.15806 1.40173 1.32624 1.21785 0.94722 0.91660 0.92992 1.21890 0.97172 1.01967 0.95277 1.21498 0.94907 0.98647 0.99069 1.18973 0.94473 0.93042 0.91505 0.99685 1.21474 0.98022 1.16437 1.21741 0.92163 1.25851 1.02512 0.95198 0.95135 1.70088 1.36998 1.19371 1.28447 0.85654 0.79970 0.77755 0.78540 1.19291 1.21375 1.19543 1.21651 0.78724 0.99802 0.97356 1.24565 0.96043 0.85446 1.04736 1.74129 0.96868 1.24234 1.19361 1.74184 1.12151 1.11990 1.19752 1.27312 0.89548 0.93639 1.01388 1.46377 1.06693 1.12515 1.50042 1.22561 1.03882 0.77712 1.04082 0.93474 0.94968 0.91568 0.88856 0.92095 0.91835 0.93431 0.75616 0.89454 0.90165 0.93543 0.88142 0.93107 0.92339 0.93161 0.94781 0.90115 0.71910 0.87447 0.85582 0.89829 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.75 7.79 71.98 0.56 -3.19 16 2 C -0.09 -2.14 2.79 -10.79 -0.03 -2.17 16 3 C -0.14 -3.20 8.66 71.98 0.62 -2.58 16 4 C 0.26 6.86 2.41 44.25 0.11 6.97 16 5 H 0.09 2.63 6.26 -2.39 -0.01 2.61 16 6 N -0.73 -22.53 4.10 -461.42 -1.89 -24.42 16 7 C 0.71 28.48 6.45 179.06 1.15 29.63 16 8 O -0.62 -29.97 13.33 -3.96 -0.05 -30.03 16 9 N -0.63 -25.58 2.97 -836.05 -2.48 -28.06 16 10 C 0.11 3.43 6.39 86.36 0.55 3.98 16 11 C -0.12 -3.95 6.08 30.67 0.19 -3.76 16 12 C -0.10 -4.11 5.10 30.62 0.16 -3.95 16 13 C 0.04 2.01 2.26 -11.31 -0.03 1.99 16 14 H -0.02 -0.89 8.14 -2.39 -0.02 -0.91 16 15 C -0.54 -29.83 8.56 25.60 0.22 -29.61 16 16 H 0.06 3.21 7.74 -2.91 -0.02 3.19 16 17 C 0.01 0.72 5.30 84.65 0.45 1.17 16 18 N -0.91 -55.03 11.41 21.45 0.24 -54.78 16 19 Si 0.96 44.23 29.54 68.60 2.03 46.26 16 20 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 21 H -0.29 -13.26 7.11 99.48 0.71 -12.56 16 22 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 23 C 0.15 7.37 5.44 86.51 0.47 7.84 16 24 C 0.16 3.80 6.28 137.98 0.87 4.67 16 25 N -0.30 -8.25 10.15 -50.15 -0.51 -8.76 16 26 N -0.34 -8.50 12.21 -59.99 -0.73 -9.23 16 27 C 0.17 2.64 12.74 180.11 2.30 4.93 16 28 N -0.47 -7.67 3.15 -542.07 -1.71 -9.38 16 29 C 0.06 0.48 11.00 127.77 1.41 1.89 16 30 H 0.05 1.52 7.63 -2.39 -0.02 1.50 16 31 H 0.03 1.12 5.86 -2.39 -0.01 1.11 16 32 H 0.07 1.63 8.14 -2.38 -0.02 1.62 16 33 H 0.09 1.83 8.14 -2.39 -0.02 1.81 16 34 H 0.06 1.50 6.06 -2.39 -0.01 1.48 16 35 H 0.06 1.30 8.14 -2.38 -0.02 1.28 16 36 H 0.05 1.21 7.60 -2.39 -0.02 1.20 16 37 H 0.41 11.65 5.85 -92.70 -0.54 11.10 16 38 H 0.09 2.27 5.64 -2.39 -0.01 2.25 16 39 H 0.08 2.23 8.14 -2.38 -0.02 2.21 16 40 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 41 H 0.10 2.42 8.14 -2.39 -0.02 2.40 16 42 H 0.05 1.98 8.14 -2.39 -0.02 1.96 16 43 H 0.06 2.21 8.14 -2.39 -0.02 2.19 16 44 H 0.26 15.12 8.31 -92.72 -0.77 14.35 16 45 H 0.03 1.69 8.14 -2.39 -0.02 1.67 16 46 H 0.08 4.79 5.14 -2.39 -0.01 4.78 16 47 H 0.27 1.15 8.06 -2.91 -0.02 1.13 16 48 H 0.11 0.46 8.14 -2.38 -0.02 0.44 16 49 H 0.13 0.27 8.14 -2.39 -0.02 0.25 16 50 H 0.08 0.97 7.06 -2.39 -0.02 0.95 16 Total: -1.00 -77.89 384.36 4.30 -73.59 By element: Atomic # 1 Polarization: 26.59 SS G_CDS: 0.41 Total: 27.00 kcal Atomic # 6 Polarization: 8.82 SS G_CDS: 8.99 Total: 17.81 kcal Atomic # 7 Polarization: -127.56 SS G_CDS: -7.08 Total: -134.63 kcal Atomic # 8 Polarization: -29.97 SS G_CDS: -0.05 Total: -30.03 kcal Atomic # 14 Polarization: 44.23 SS G_CDS: 2.03 Total: 46.26 kcal Total: -77.89 4.30 -73.59 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595616350.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.653 kcal (2) G-P(sol) polarization free energy of solvation -77.888 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.765 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.295 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.593 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.060 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.76 seconds