Wall clock time and date at job start Tue Mar 31 2020 19:41:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.30297 * 126.34943 * 2 1 4 4 N 1.28527 * 110.05717 * 180.02562 * 3 2 1 5 5 C 1.31222 * 109.85613 * 359.74181 * 4 3 2 6 6 N 1.38588 * 126.46938 * 180.26098 * 5 4 3 7 7 C 1.46954 * 111.00174 * 69.16470 * 6 5 4 8 8 C 1.53049 * 109.36468 * 176.80875 * 7 6 5 9 9 N 1.46958 * 109.36065 * 58.40412 * 8 7 6 10 10 C 1.46898 * 110.99819 * 176.81274 * 9 8 7 11 11 C 1.50704 * 109.47140 * 293.79544 * 10 9 8 12 12 H 1.08000 * 119.99810 * 0.02562 * 11 10 9 13 13 C 1.37876 * 120.00230 * 179.97438 * 11 10 9 14 14 N 1.31515 * 119.99798 * 0.02562 * 13 11 10 15 15 Si 1.86794 * 120.00167 * 180.02562 * 13 11 10 16 16 H 1.48502 * 109.47012 * 0.02562 * 15 13 11 17 17 H 1.48500 * 109.47340 * 120.00147 * 15 13 11 18 18 H 1.48503 * 109.47457 * 240.00343 * 15 13 11 19 19 C 1.46960 * 110.88221 * 300.67880 * 9 8 7 20 20 C 1.46958 * 110.99769 * 305.36623 * 6 5 4 21 21 N 1.36450 * 107.05570 * 0.40205 * 5 4 3 22 22 C 1.46493 * 127.13632 * 179.87119 * 21 5 4 23 23 C 1.53004 * 109.47248 * 264.24255 * 22 21 5 24 24 H 1.08991 * 110.45654 * 307.60248 * 23 22 21 25 25 C 1.54511 * 110.50809 * 184.99920 * 23 22 21 26 26 C 1.54478 * 104.06271 * 241.21551 * 25 23 22 27 27 O 1.44428 * 104.80571 * 336.02607 * 26 25 23 28 28 C 1.44425 * 105.27080 * 40.50777 * 27 26 25 29 29 H 1.09001 * 109.47294 * 269.96125 * 1 2 3 30 30 H 1.08994 * 109.47316 * 29.95755 * 1 2 3 31 31 H 1.09004 * 109.47030 * 149.96028 * 1 2 3 32 32 H 1.08997 * 109.48987 * 296.78169 * 7 6 5 33 33 H 1.09005 * 109.48561 * 56.84331 * 7 6 5 34 34 H 1.08992 * 109.48811 * 298.43882 * 8 7 6 35 35 H 1.08996 * 109.50741 * 178.37819 * 8 7 6 36 36 H 1.08999 * 109.47281 * 53.79823 * 10 9 8 37 37 H 1.08998 * 109.47303 * 173.80168 * 10 9 8 38 38 H 0.97000 * 120.00418 * 179.97438 * 14 13 11 39 39 H 1.09008 * 109.48543 * 299.35678 * 19 9 8 40 40 H 1.08994 * 109.49049 * 179.29426 * 19 9 8 41 41 H 1.09003 * 109.48747 * 303.15963 * 20 6 5 42 42 H 1.09002 * 109.48946 * 63.22149 * 20 6 5 43 43 H 1.09002 * 109.47060 * 144.24059 * 22 21 5 44 44 H 1.09001 * 109.47210 * 24.24005 * 22 21 5 45 45 H 1.08994 * 110.51756 * 359.86495 * 25 23 22 46 46 H 1.09008 * 110.51081 * 122.57740 * 25 23 22 47 47 H 1.09003 * 110.37221 * 94.85430 * 26 25 23 48 48 H 1.09004 * 110.37664 * 217.19207 * 26 25 23 49 49 H 1.09008 * 110.36870 * 200.65723 * 28 27 26 50 50 H 1.08998 * 110.46520 * 78.37648 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2793 1.0494 0.0000 4 7 3.5129 0.6889 -0.0005 5 6 3.5945 -0.6208 0.0046 6 7 4.7580 -1.3737 0.0109 7 6 5.4615 -1.2453 1.2947 8 6 6.6951 -2.1511 1.2902 9 7 7.5719 -1.7747 0.1725 10 6 8.8052 -2.5728 0.1790 11 6 9.6191 -2.2297 1.4001 12 1 9.2563 -1.4928 2.1013 13 6 10.8264 -2.8572 1.6226 14 7 11.2680 -3.7549 0.7689 15 14 11.8349 -2.4324 3.1364 16 1 11.1226 -1.4006 3.9322 17 1 12.0240 -3.6513 3.9633 18 1 13.1597 -1.9080 2.7177 19 6 6.8684 -1.9031 -1.1114 20 6 5.6348 -0.9973 -1.1068 21 7 2.3174 -1.1014 -0.0005 22 6 1.9010 -2.5058 -0.0003 23 6 1.6238 -2.9559 -1.4361 24 1 0.9307 -2.2702 -1.9232 25 6 1.0631 -4.3955 -1.4534 26 6 2.1067 -5.1951 -2.2645 27 8 2.7665 -4.2102 -3.0894 28 6 2.9399 -3.0561 -2.2386 29 1 -0.3634 -0.0007 1.0277 30 1 -0.3633 0.8903 -0.5131 31 1 -0.3633 -0.8897 -0.5145 32 1 5.7710 -0.2100 1.4378 33 1 4.7958 -1.5415 2.1054 34 1 6.3836 -3.1891 1.1743 35 1 7.2346 -2.0361 2.2302 36 1 8.5520 -3.6328 0.1972 37 1 9.3850 -2.3531 -0.7174 38 1 12.1176 -4.1962 0.9252 39 1 6.5588 -2.9384 -1.2544 40 1 7.5341 -1.6070 -1.9220 41 1 5.0954 -1.1126 -2.0469 42 1 5.9463 0.0409 -0.9910 43 1 0.9954 -2.6162 0.5963 44 1 2.6941 -3.1199 0.4262 45 1 0.9855 -4.7875 -0.4394 46 1 0.0926 -4.4215 -1.9493 47 1 2.8234 -5.6714 -1.5955 48 1 1.6129 -5.9418 -2.8866 49 1 3.0863 -2.1593 -2.8409 50 1 3.7847 -3.2022 -1.5656 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601880094.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:41:05 Heat of formation + Delta-G solvation = 52.870436 kcal Electronic energy + Delta-G solvation = -30590.624956 eV Core-core repulsion = 26654.589701 eV Total energy + Delta-G solvation = -3936.035254 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -43.10980 -39.77282 -38.87533 -35.79957 -35.28236 -32.68089 -32.57821 -31.68743 -30.66309 -29.67294 -28.45460 -26.90099 -26.51276 -25.05975 -23.32448 -23.16670 -22.08577 -21.44880 -21.13291 -20.54273 -19.18974 -17.70917 -16.78527 -16.60322 -16.41928 -16.25934 -15.65489 -15.46262 -14.77044 -14.74615 -14.52269 -14.35954 -14.24348 -13.96559 -13.63625 -13.31796 -13.23905 -13.07928 -13.02358 -12.85712 -12.38973 -12.18417 -11.88489 -11.79786 -11.60598 -11.42621 -11.32400 -11.14640 -10.98602 -10.87453 -10.81070 -10.61291 -10.50861 -10.43230 -10.21300 -10.05612 -9.82218 -9.22010 -9.03154 -8.69674 -8.45506 -7.30889 -6.04958 -4.06491 1.57689 2.06342 2.76361 3.29922 3.37792 3.42524 3.59122 3.68404 3.99243 4.08951 4.24365 4.35956 4.40381 4.48524 4.68894 4.72604 4.82070 4.87703 4.93976 4.97399 5.08542 5.09226 5.24850 5.30696 5.32691 5.39131 5.39335 5.46615 5.52111 5.53119 5.57246 5.63526 5.64977 5.73017 5.80358 5.84837 5.96699 6.05570 6.32505 6.43577 6.47643 6.53612 6.56047 6.80638 7.24322 7.25893 7.30308 7.76703 8.03496 8.13937 8.49613 8.68116 9.01297 9.58135 11.05871 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.013987 B = 0.003152 C = 0.002759 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2001.437873 B = 8881.767103 C =10144.627100 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 C 0.170 3.830 3 N -0.288 5.288 4 N -0.307 5.307 5 C 0.357 3.643 6 N -0.468 5.468 7 C 0.069 3.931 8 C 0.070 3.930 9 N -0.536 5.536 10 C 0.194 3.806 11 C -0.508 4.508 12 H 0.064 0.936 13 C 0.056 3.944 14 N -0.898 5.898 15 Si 0.897 3.103 16 H -0.272 1.272 17 H -0.285 1.285 18 H -0.284 1.284 19 C 0.058 3.942 20 C 0.073 3.927 21 N -0.467 5.467 22 C 0.120 3.880 23 C -0.137 4.137 24 H 0.088 0.912 25 C -0.145 4.145 26 C 0.043 3.957 27 O -0.372 6.372 28 C 0.049 3.951 29 H 0.084 0.916 30 H 0.094 0.906 31 H 0.075 0.925 32 H 0.060 0.940 33 H 0.069 0.931 34 H 0.030 0.970 35 H 0.094 0.906 36 H -0.008 1.008 37 H 0.032 0.968 38 H 0.261 0.739 39 H 0.032 0.968 40 H 0.080 0.920 41 H 0.070 0.930 42 H 0.063 0.937 43 H 0.095 0.905 44 H 0.107 0.893 45 H 0.082 0.918 46 H 0.080 0.920 47 H 0.064 0.936 48 H 0.092 0.908 49 H 0.085 0.915 50 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.712 -1.544 -3.311 25.970 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.097 4.097 3 N -0.129 5.129 4 N -0.150 5.150 5 C 0.001 3.999 6 N -0.195 5.195 7 C -0.058 4.058 8 C -0.059 4.059 9 N -0.261 5.261 10 C 0.069 3.931 11 C -0.546 4.546 12 H 0.082 0.918 13 C -0.146 4.146 14 N -0.537 5.537 15 Si 0.725 3.275 16 H -0.196 1.196 17 H -0.212 1.212 18 H -0.210 1.210 19 C -0.071 4.071 20 C -0.054 4.054 21 N -0.161 5.161 22 C -0.003 4.003 23 C -0.157 4.157 24 H 0.106 0.894 25 C -0.184 4.184 26 C -0.034 4.034 27 O -0.291 6.291 28 C -0.027 4.027 29 H 0.102 0.898 30 H 0.113 0.887 31 H 0.094 0.906 32 H 0.078 0.922 33 H 0.088 0.912 34 H 0.048 0.952 35 H 0.112 0.888 36 H 0.010 0.990 37 H 0.050 0.950 38 H 0.070 0.930 39 H 0.050 0.950 40 H 0.098 0.902 41 H 0.088 0.912 42 H 0.081 0.919 43 H 0.113 0.887 44 H 0.126 0.874 45 H 0.101 0.899 46 H 0.099 0.901 47 H 0.082 0.918 48 H 0.110 0.890 49 H 0.103 0.897 50 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -25.041 -0.251 -3.566 25.295 hybrid contribution 0.177 -1.351 0.977 1.677 sum -24.863 -1.602 -2.588 25.049 Atomic orbital electron populations 1.20184 0.83849 1.04334 1.03853 1.24803 0.96577 0.82573 1.05754 1.74041 0.96540 1.24070 1.18216 1.74699 1.11919 1.08413 1.20000 1.22548 0.85667 0.88547 1.03120 1.59068 1.02617 1.51038 1.06734 1.22377 0.94904 1.01230 0.87317 1.22010 0.91064 0.95343 0.97461 1.62295 1.06020 1.57645 1.00182 1.19714 0.84892 0.90208 0.98253 1.21187 1.03787 1.22346 1.07325 0.91791 1.24984 0.97629 0.95097 0.96858 1.69965 1.20863 1.26794 1.36119 0.86457 0.80130 0.78147 0.82788 1.19631 1.21154 1.20992 1.22097 0.93423 0.97043 0.94540 1.22261 0.92320 0.99980 0.90837 1.46380 1.06241 1.08156 1.55299 1.21967 1.02604 0.78473 0.97238 1.22933 0.99262 0.98104 0.95406 0.89405 1.22938 1.00084 0.93506 1.01852 1.23427 0.93836 0.92164 0.93939 1.89160 1.79907 1.24858 1.35172 1.23591 0.96194 0.89454 0.93510 0.89769 0.88702 0.90639 0.92185 0.91240 0.95182 0.88787 0.98969 0.95029 0.92960 0.94984 0.90166 0.91154 0.91894 0.88662 0.87436 0.89932 0.90080 0.91813 0.88971 0.89683 0.90076 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.39 10.19 36.00 0.37 -0.03 16 2 C 0.17 1.93 8.07 -154.01 -1.24 0.69 16 3 N -0.29 -4.44 12.18 32.99 0.40 -4.03 16 4 N -0.31 -5.19 12.07 30.32 0.37 -4.83 16 5 C 0.36 5.13 6.39 -318.86 -2.04 3.09 16 6 N -0.47 -6.80 4.07 -174.35 -0.71 -7.51 16 7 C 0.07 1.08 5.55 -3.77 -0.02 1.06 16 8 C 0.07 1.30 5.43 -3.77 -0.02 1.28 16 9 N -0.54 -11.20 4.70 -235.91 -1.11 -12.31 16 10 C 0.19 4.93 4.72 -4.97 -0.02 4.90 16 11 C -0.51 -13.96 8.47 -34.44 -0.29 -14.25 16 12 H 0.06 1.75 7.13 -52.49 -0.37 1.37 16 13 C 0.06 1.56 5.46 -17.82 -0.10 1.46 16 14 N -0.90 -26.34 13.29 55.43 0.74 -25.61 16 15 Si 0.90 21.42 29.54 -169.99 -5.02 16.40 16 16 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 17 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 18 H -0.28 -6.77 7.11 56.52 0.40 -6.36 16 19 C 0.06 1.02 5.61 -3.77 -0.02 1.00 16 20 C 0.07 1.13 5.47 -3.77 -0.02 1.11 16 21 N -0.47 -5.18 2.70 -114.08 -0.31 -5.48 16 22 C 0.12 0.91 5.01 -4.04 -0.02 0.89 16 23 C -0.14 -1.02 3.34 -89.05 -0.30 -1.32 16 24 H 0.09 0.64 7.99 -51.93 -0.41 0.23 16 25 C -0.15 -0.82 6.74 -25.16 -0.17 -0.99 16 26 C 0.04 0.34 7.63 37.93 0.29 0.63 16 27 O -0.37 -4.32 11.65 -35.23 -0.41 -4.73 16 28 C 0.05 0.52 6.97 37.93 0.26 0.78 16 29 H 0.08 0.42 8.14 -51.93 -0.42 -0.01 16 30 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.07 0.31 7.82 -51.93 -0.41 -0.09 16 32 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 33 H 0.07 0.98 8.13 -51.93 -0.42 0.56 16 34 H 0.03 0.56 8.14 -51.93 -0.42 0.13 16 35 H 0.09 1.87 6.79 -51.93 -0.35 1.52 16 36 H -0.01 -0.20 8.12 -51.93 -0.42 -0.62 16 37 H 0.03 0.86 8.03 -51.93 -0.42 0.44 16 38 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 39 H 0.03 0.56 8.14 -51.92 -0.42 0.14 16 40 H 0.08 1.39 8.07 -51.93 -0.42 0.97 16 41 H 0.07 0.98 8.13 -51.93 -0.42 0.56 16 42 H 0.06 1.08 8.10 -51.93 -0.42 0.66 16 43 H 0.10 0.47 8.07 -51.93 -0.42 0.05 16 44 H 0.11 0.90 7.93 -51.93 -0.41 0.49 16 45 H 0.08 0.34 7.73 -51.93 -0.40 -0.06 16 46 H 0.08 0.38 8.14 -51.92 -0.42 -0.05 16 47 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 48 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 49 H 0.08 0.98 8.14 -51.92 -0.42 0.55 16 50 H 0.08 0.96 7.13 -51.93 -0.37 0.59 16 LS Contribution 397.29 15.07 5.99 5.99 Total: -1.00 -33.13 397.29 -12.02 -45.15 By element: Atomic # 1 Polarization: 5.26 SS G_CDS: -8.61 Total: -3.35 kcal Atomic # 6 Polarization: 3.65 SS G_CDS: -3.34 Total: 0.31 kcal Atomic # 7 Polarization: -59.14 SS G_CDS: -0.62 Total: -59.77 kcal Atomic # 8 Polarization: -4.32 SS G_CDS: -0.41 Total: -4.73 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.02 Total: 16.40 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -33.13 -12.02 -45.15 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601880094.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.021 kcal (2) G-P(sol) polarization free energy of solvation -33.130 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.892 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.021 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.151 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.870 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds