Wall clock time and date at job start Tue Mar 31 2020 19:41:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.30297 * 126.34943 * 2 1 4 4 N 1.28527 * 110.05717 * 180.02562 * 3 2 1 5 5 C 1.31222 * 109.85613 * 359.74181 * 4 3 2 6 6 N 1.38588 * 126.46938 * 180.26098 * 5 4 3 7 7 C 1.46954 * 111.00174 * 69.16470 * 6 5 4 8 8 C 1.53049 * 109.36468 * 176.80875 * 7 6 5 9 9 N 1.46958 * 109.36065 * 58.40412 * 8 7 6 10 10 C 1.46898 * 110.99819 * 176.81274 * 9 8 7 11 11 C 1.50704 * 109.47140 * 293.79544 * 10 9 8 12 12 H 1.08000 * 119.99810 * 0.02562 * 11 10 9 13 13 C 1.37876 * 120.00230 * 179.97438 * 11 10 9 14 14 N 1.31515 * 119.99798 * 0.02562 * 13 11 10 15 15 Si 1.86794 * 120.00167 * 180.02562 * 13 11 10 16 16 H 1.48502 * 109.47012 * 0.02562 * 15 13 11 17 17 H 1.48500 * 109.47340 * 120.00147 * 15 13 11 18 18 H 1.48503 * 109.47457 * 240.00343 * 15 13 11 19 19 C 1.46960 * 110.88221 * 300.67880 * 9 8 7 20 20 C 1.46958 * 110.99769 * 305.36623 * 6 5 4 21 21 N 1.36450 * 107.05570 * 0.40205 * 5 4 3 22 22 C 1.46493 * 127.13632 * 179.87119 * 21 5 4 23 23 C 1.53004 * 109.47248 * 264.24255 * 22 21 5 24 24 H 1.08991 * 110.45654 * 307.60248 * 23 22 21 25 25 C 1.54511 * 110.50809 * 184.99920 * 23 22 21 26 26 C 1.54478 * 104.06271 * 241.21551 * 25 23 22 27 27 O 1.44428 * 104.80571 * 336.02607 * 26 25 23 28 28 C 1.44425 * 105.27080 * 40.50777 * 27 26 25 29 29 H 1.09001 * 109.47294 * 269.96125 * 1 2 3 30 30 H 1.08994 * 109.47316 * 29.95755 * 1 2 3 31 31 H 1.09004 * 109.47030 * 149.96028 * 1 2 3 32 32 H 1.08997 * 109.48987 * 296.78169 * 7 6 5 33 33 H 1.09005 * 109.48561 * 56.84331 * 7 6 5 34 34 H 1.08992 * 109.48811 * 298.43882 * 8 7 6 35 35 H 1.08996 * 109.50741 * 178.37819 * 8 7 6 36 36 H 1.08999 * 109.47281 * 53.79823 * 10 9 8 37 37 H 1.08998 * 109.47303 * 173.80168 * 10 9 8 38 38 H 0.97000 * 120.00418 * 179.97438 * 14 13 11 39 39 H 1.09008 * 109.48543 * 299.35678 * 19 9 8 40 40 H 1.08994 * 109.49049 * 179.29426 * 19 9 8 41 41 H 1.09003 * 109.48747 * 303.15963 * 20 6 5 42 42 H 1.09002 * 109.48946 * 63.22149 * 20 6 5 43 43 H 1.09002 * 109.47060 * 144.24059 * 22 21 5 44 44 H 1.09001 * 109.47210 * 24.24005 * 22 21 5 45 45 H 1.08994 * 110.51756 * 359.86495 * 25 23 22 46 46 H 1.09008 * 110.51081 * 122.57740 * 25 23 22 47 47 H 1.09003 * 110.37221 * 94.85430 * 26 25 23 48 48 H 1.09004 * 110.37664 * 217.19207 * 26 25 23 49 49 H 1.09008 * 110.36870 * 200.65723 * 28 27 26 50 50 H 1.08998 * 110.46520 * 78.37648 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2793 1.0494 0.0000 4 7 3.5129 0.6889 -0.0005 5 6 3.5945 -0.6208 0.0046 6 7 4.7580 -1.3737 0.0109 7 6 5.4615 -1.2453 1.2947 8 6 6.6951 -2.1511 1.2902 9 7 7.5719 -1.7747 0.1725 10 6 8.8052 -2.5728 0.1790 11 6 9.6191 -2.2297 1.4001 12 1 9.2563 -1.4928 2.1013 13 6 10.8264 -2.8572 1.6226 14 7 11.2680 -3.7549 0.7689 15 14 11.8349 -2.4324 3.1364 16 1 11.1226 -1.4006 3.9322 17 1 12.0240 -3.6513 3.9633 18 1 13.1597 -1.9080 2.7177 19 6 6.8684 -1.9031 -1.1114 20 6 5.6348 -0.9973 -1.1068 21 7 2.3174 -1.1014 -0.0005 22 6 1.9010 -2.5058 -0.0003 23 6 1.6238 -2.9559 -1.4361 24 1 0.9307 -2.2702 -1.9232 25 6 1.0631 -4.3955 -1.4534 26 6 2.1067 -5.1951 -2.2645 27 8 2.7665 -4.2102 -3.0894 28 6 2.9399 -3.0561 -2.2386 29 1 -0.3634 -0.0007 1.0277 30 1 -0.3633 0.8903 -0.5131 31 1 -0.3633 -0.8897 -0.5145 32 1 5.7710 -0.2100 1.4378 33 1 4.7958 -1.5415 2.1054 34 1 6.3836 -3.1891 1.1743 35 1 7.2346 -2.0361 2.2302 36 1 8.5520 -3.6328 0.1972 37 1 9.3850 -2.3531 -0.7174 38 1 12.1176 -4.1962 0.9252 39 1 6.5588 -2.9384 -1.2544 40 1 7.5341 -1.6070 -1.9220 41 1 5.0954 -1.1126 -2.0469 42 1 5.9463 0.0409 -0.9910 43 1 0.9954 -2.6162 0.5963 44 1 2.6941 -3.1199 0.4262 45 1 0.9855 -4.7875 -0.4394 46 1 0.0926 -4.4215 -1.9493 47 1 2.8234 -5.6714 -1.5955 48 1 1.6129 -5.9418 -2.8866 49 1 3.0863 -2.1593 -2.8409 50 1 3.7847 -3.2022 -1.5656 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601880094.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:41:04 Heat of formation + Delta-G solvation = 31.693377 kcal Electronic energy + Delta-G solvation = -30591.543262 eV Core-core repulsion = 26654.589701 eV Total energy + Delta-G solvation = -3936.953560 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -44.09671 -40.47299 -40.28527 -36.88670 -36.58315 -34.62046 -33.34891 -32.64534 -32.09203 -30.37516 -29.94280 -28.13341 -27.27787 -26.68580 -24.66808 -23.92919 -23.76363 -22.50300 -22.16349 -21.27063 -20.60358 -18.66550 -18.49594 -17.66242 -17.57283 -17.18608 -16.67905 -16.38103 -16.26147 -15.93493 -15.82423 -15.55613 -15.38794 -15.34363 -14.98991 -14.51787 -14.01529 -13.90970 -13.74820 -13.63544 -13.51069 -13.42512 -13.18559 -13.05222 -12.77494 -12.62274 -12.54250 -12.39559 -12.35223 -12.24720 -12.16351 -12.08606 -11.76826 -11.67584 -11.52654 -11.23401 -11.04364 -10.81180 -10.62265 -10.11949 -9.89433 -9.06887 -8.20594 -6.30366 0.62934 1.16714 1.40869 1.42449 1.55439 1.73275 2.40266 2.57249 2.96230 3.11401 3.19781 3.36343 3.45881 3.56522 3.73545 3.76739 3.87245 4.00794 4.08478 4.12257 4.15433 4.24432 4.26197 4.31546 4.37782 4.43126 4.44745 4.50723 4.64682 4.67467 4.71154 4.81491 4.83299 4.84554 4.90023 4.93110 4.97656 4.99508 5.01132 5.09329 5.16062 5.19258 5.23480 5.52116 5.59153 5.65193 5.79527 6.03308 6.17416 6.29440 6.56937 6.85345 7.39426 7.66499 8.90682 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.013987 B = 0.003152 C = 0.002759 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2001.437873 B = 8881.767103 C =10144.627100 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 C 0.192 3.808 3 N -0.335 5.335 4 N -0.348 5.348 5 C 0.345 3.655 6 N -0.455 5.455 7 C 0.083 3.917 8 C 0.076 3.924 9 N -0.547 5.547 10 C 0.211 3.789 11 C -0.522 4.522 12 H 0.063 0.937 13 C 0.004 3.996 14 N -0.933 5.933 15 Si 0.967 3.033 16 H -0.264 1.264 17 H -0.277 1.277 18 H -0.280 1.280 19 C 0.062 3.938 20 C 0.088 3.912 21 N -0.459 5.459 22 C 0.116 3.884 23 C -0.127 4.127 24 H 0.096 0.904 25 C -0.133 4.133 26 C 0.031 3.969 27 O -0.403 6.403 28 C 0.047 3.953 29 H 0.105 0.895 30 H 0.099 0.901 31 H 0.106 0.894 32 H 0.040 0.960 33 H 0.093 0.907 34 H 0.031 0.969 35 H 0.078 0.922 36 H -0.033 1.033 37 H 0.005 0.995 38 H 0.264 0.736 39 H 0.033 0.967 40 H 0.077 0.923 41 H 0.086 0.914 42 H 0.044 0.956 43 H 0.137 0.863 44 H 0.101 0.899 45 H 0.106 0.894 46 H 0.100 0.900 47 H 0.059 0.941 48 H 0.106 0.894 49 H 0.067 0.933 50 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.992 -2.123 -2.030 29.140 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.076 4.076 3 N -0.176 5.176 4 N -0.191 5.191 5 C -0.013 4.013 6 N -0.181 5.181 7 C -0.045 4.045 8 C -0.053 4.053 9 N -0.272 5.272 10 C 0.085 3.915 11 C -0.560 4.560 12 H 0.081 0.919 13 C -0.195 4.195 14 N -0.574 5.574 15 Si 0.792 3.208 16 H -0.188 1.188 17 H -0.203 1.203 18 H -0.206 1.206 19 C -0.067 4.067 20 C -0.040 4.040 21 N -0.152 5.152 22 C -0.005 4.005 23 C -0.146 4.146 24 H 0.114 0.886 25 C -0.171 4.171 26 C -0.045 4.045 27 O -0.322 6.322 28 C -0.030 4.030 29 H 0.124 0.876 30 H 0.118 0.882 31 H 0.124 0.876 32 H 0.059 0.941 33 H 0.112 0.888 34 H 0.050 0.950 35 H 0.096 0.904 36 H -0.015 1.015 37 H 0.023 0.977 38 H 0.073 0.927 39 H 0.051 0.949 40 H 0.096 0.904 41 H 0.104 0.896 42 H 0.063 0.937 43 H 0.155 0.845 44 H 0.120 0.880 45 H 0.124 0.876 46 H 0.118 0.882 47 H 0.077 0.923 48 H 0.124 0.876 49 H 0.085 0.915 50 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -28.361 -0.835 -2.286 28.465 hybrid contribution 1.105 -1.209 0.499 1.713 sum -27.256 -2.044 -1.787 27.391 Atomic orbital electron populations 1.20503 0.79874 1.06112 1.05739 1.25778 0.98327 0.81524 1.02019 1.73964 0.96478 1.26123 1.20990 1.74579 1.13377 1.09951 1.21186 1.22355 0.86386 0.88205 1.04352 1.59017 1.02579 1.50849 1.05638 1.22166 0.94215 0.99230 0.88851 1.21934 0.91526 0.96081 0.95738 1.62191 1.05813 1.56757 1.02408 1.19339 0.86505 0.89187 0.96482 1.21470 1.04382 1.22300 1.07885 0.91920 1.25872 0.98790 0.94832 0.99964 1.70085 1.21456 1.27806 1.38036 0.85360 0.78252 0.78210 0.78951 1.18819 1.20268 1.20622 1.22090 0.94027 0.97651 0.92890 1.22037 0.91714 0.98072 0.92159 1.46540 1.04815 1.09572 1.54277 1.22315 1.04123 0.76203 0.97909 1.22861 0.97488 0.99646 0.94655 0.88573 1.22921 0.99771 0.91400 1.02973 1.23682 0.94414 0.92164 0.94237 1.89128 1.80646 1.25879 1.36585 1.23517 0.97631 0.88647 0.93199 0.87625 0.88219 0.87575 0.94129 0.88841 0.95049 0.90362 1.01483 0.97725 0.92683 0.94859 0.90421 0.89574 0.93746 0.84527 0.88046 0.87594 0.88180 0.92287 0.87633 0.91498 0.91925 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.51 10.19 71.24 0.73 0.21 16 2 C 0.19 3.86 8.07 137.64 1.11 4.97 16 3 N -0.33 -10.09 12.18 -49.54 -0.60 -10.69 16 4 N -0.35 -11.81 12.07 -58.00 -0.70 -12.51 16 5 C 0.34 9.68 6.39 260.11 1.66 11.34 16 6 N -0.45 -13.21 4.07 -705.54 -2.87 -16.08 16 7 C 0.08 2.62 5.55 86.31 0.48 3.10 16 8 C 0.08 2.87 5.43 86.31 0.47 3.34 16 9 N -0.55 -23.79 4.70 -900.29 -4.23 -28.02 16 10 C 0.21 11.22 4.72 85.56 0.40 11.62 16 11 C -0.52 -29.47 8.47 25.60 0.22 -29.25 16 12 H 0.06 3.49 7.13 -2.91 -0.02 3.47 16 13 C 0.00 0.20 5.46 84.65 0.46 0.66 16 14 N -0.93 -55.98 13.29 21.45 0.28 -55.70 16 15 Si 0.97 44.29 29.54 68.60 2.03 46.32 16 16 H -0.26 -11.66 7.11 99.48 0.71 -10.95 16 17 H -0.28 -12.26 7.11 99.48 0.71 -11.55 16 18 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 19 C 0.06 2.27 5.61 86.31 0.48 2.76 16 20 C 0.09 2.79 5.47 86.31 0.47 3.26 16 21 N -0.46 -9.10 2.70 -514.85 -1.39 -10.49 16 22 C 0.12 1.34 5.01 86.38 0.43 1.77 16 23 C -0.13 -1.49 3.34 -9.78 -0.03 -1.52 16 24 H 0.10 1.02 7.99 -2.39 -0.02 1.00 16 25 C -0.13 -0.98 6.74 31.61 0.21 -0.76 16 26 C 0.03 0.43 7.63 72.48 0.55 0.99 16 27 O -0.40 -9.14 11.65 -148.98 -1.74 -10.87 16 28 C 0.05 0.95 6.97 72.48 0.51 1.46 16 29 H 0.11 0.51 8.14 -2.39 -0.02 0.49 16 30 H 0.10 0.79 8.14 -2.39 -0.02 0.77 16 31 H 0.11 0.25 7.82 -2.38 -0.02 0.24 16 32 H 0.04 1.46 8.14 -2.39 -0.02 1.44 16 33 H 0.09 2.53 8.13 -2.38 -0.02 2.51 16 34 H 0.03 1.18 8.14 -2.39 -0.02 1.16 16 35 H 0.08 3.20 6.79 -2.39 -0.02 3.18 16 36 H -0.03 -1.86 8.12 -2.39 -0.02 -1.88 16 37 H 0.00 0.27 8.03 -2.39 -0.02 0.25 16 38 H 0.26 14.87 8.31 -92.71 -0.77 14.10 16 39 H 0.03 1.21 8.14 -2.38 -0.02 1.19 16 40 H 0.08 2.85 8.07 -2.39 -0.02 2.83 16 41 H 0.09 2.47 8.13 -2.39 -0.02 2.45 16 42 H 0.04 1.59 8.10 -2.39 -0.02 1.57 16 43 H 0.14 0.54 8.07 -2.39 -0.02 0.52 16 44 H 0.10 1.39 7.93 -2.39 -0.02 1.37 16 45 H 0.11 0.33 7.73 -2.39 -0.02 0.31 16 46 H 0.10 0.43 8.14 -2.38 -0.02 0.41 16 47 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 48 H 0.11 1.13 8.14 -2.38 -0.02 1.11 16 49 H 0.07 1.55 8.14 -2.38 -0.02 1.53 16 50 H 0.06 1.48 7.13 -2.39 -0.02 1.47 16 Total: -1.00 -76.05 397.29 -0.16 -76.21 By element: Atomic # 1 Polarization: 6.99 SS G_CDS: 0.91 Total: 7.90 kcal Atomic # 6 Polarization: 5.78 SS G_CDS: 8.16 Total: 13.94 kcal Atomic # 7 Polarization: -123.98 SS G_CDS: -9.51 Total: -133.49 kcal Atomic # 8 Polarization: -9.14 SS G_CDS: -1.74 Total: -10.87 kcal Atomic # 14 Polarization: 44.29 SS G_CDS: 2.03 Total: 46.32 kcal Total: -76.05 -0.16 -76.21 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601880094.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.904 kcal (2) G-P(sol) polarization free energy of solvation -76.054 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.849 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.156 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.210 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.693 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds