Wall clock time and date at job start Tue Mar 31 2020 19:41:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.30295 * 126.34486 * 2 1 4 4 N 1.28527 * 110.05301 * 180.31264 * 3 2 1 5 5 C 1.31219 * 109.86188 * 359.71926 * 4 3 2 6 6 N 1.38575 * 126.47418 * 179.97438 * 5 4 3 7 7 C 1.46961 * 111.00088 * 114.18312 * 6 5 4 8 8 C 1.53049 * 109.36492 * 176.80834 * 7 6 5 9 9 N 1.46958 * 109.36366 * 58.40103 * 8 7 6 10 10 C 1.46895 * 111.00286 * 176.80840 * 9 8 7 11 11 C 1.50704 * 109.46762 * 59.07713 * 10 9 8 12 12 H 1.07997 * 120.00086 * 4.74375 * 11 10 9 13 13 C 1.37876 * 119.99965 * 184.73087 * 11 10 9 14 14 N 1.31516 * 120.00120 * 0.02562 * 13 11 10 15 15 Si 1.86801 * 120.00169 * 180.02562 * 13 11 10 16 16 H 1.48500 * 109.46941 * 0.02562 * 15 13 11 17 17 H 1.48498 * 109.47395 * 120.00229 * 15 13 11 18 18 H 1.48500 * 109.47010 * 240.00491 * 15 13 11 19 19 C 1.46961 * 110.88075 * 300.67966 * 9 8 7 20 20 C 1.46958 * 111.00146 * 350.38146 * 6 5 4 21 21 N 1.36459 * 107.05006 * 359.97438 * 5 4 3 22 22 C 1.46496 * 127.13617 * 180.02562 * 21 5 4 23 23 C 1.53001 * 109.47250 * 276.45331 * 22 21 5 24 24 H 1.08999 * 110.91259 * 57.46785 * 23 22 21 25 25 C 1.55302 * 110.84504 * 181.05306 * 23 22 21 26 26 C 1.54958 * 100.94030 * 152.32088 * 25 23 22 27 27 O 1.43644 * 105.13291 * 323.55050 * 26 25 23 28 28 C 1.43237 * 109.97235 * 24.43072 * 27 26 25 29 29 H 1.08997 * 109.47188 * 276.24825 * 1 2 3 30 30 H 1.08999 * 109.47680 * 36.24531 * 1 2 3 31 31 H 1.08997 * 109.47131 * 156.24765 * 1 2 3 32 32 H 1.09004 * 109.48539 * 296.77784 * 7 6 5 33 33 H 1.09003 * 109.48895 * 56.84049 * 7 6 5 34 34 H 1.08995 * 109.49254 * 298.43292 * 8 7 6 35 35 H 1.08999 * 109.48661 * 178.36251 * 8 7 6 36 36 H 1.08995 * 109.47253 * 179.07919 * 10 9 8 37 37 H 1.09007 * 109.47323 * 299.08400 * 10 9 8 38 38 H 0.97002 * 120.00260 * 179.97438 * 14 13 11 39 39 H 1.09004 * 109.48539 * 299.35158 * 19 9 8 40 40 H 1.09003 * 109.48895 * 179.28893 * 19 9 8 41 41 H 1.08999 * 109.48582 * 303.15254 * 20 6 5 42 42 H 1.08998 * 109.48950 * 63.20149 * 20 6 5 43 43 H 1.08996 * 109.47399 * 156.44557 * 22 21 5 44 44 H 1.09002 * 109.47060 * 36.45178 * 22 21 5 45 45 H 1.08998 * 111.13370 * 34.40486 * 25 23 22 46 46 H 1.08996 * 111.16321 * 270.25078 * 25 23 22 47 47 H 1.09000 * 110.30639 * 204.63964 * 26 25 23 48 48 H 1.08997 * 110.38994 * 82.51276 * 26 25 23 49 49 H 1.09000 * 109.82967 * 117.79548 * 28 27 26 50 50 H 1.09002 * 109.83076 * 238.77171 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2792 1.0495 0.0000 4 7 3.5128 0.6889 -0.0066 5 6 3.5945 -0.6207 -0.0051 6 7 4.7580 -1.3735 -0.0112 7 6 4.9026 -2.1296 1.2406 8 6 6.1546 -3.0065 1.1621 9 7 7.3301 -2.1572 0.9243 10 6 8.5634 -2.9552 0.9178 11 6 8.4767 -4.0051 -0.1599 12 1 7.6283 -4.0245 -0.8278 13 6 9.4807 -4.9406 -0.2932 14 7 10.5138 -4.9171 0.5203 15 14 9.3737 -6.2416 -1.6295 16 1 8.1220 -6.0519 -2.4058 17 1 10.5423 -6.1164 -2.5371 18 1 9.3717 -7.5903 -1.0081 19 6 7.1855 -1.4011 -0.3276 20 6 5.9335 -0.5243 -0.2491 21 7 2.3174 -1.1013 0.0035 22 6 1.9010 -2.5058 0.0087 23 6 1.9027 -3.0436 -1.4236 24 1 2.8869 -2.9339 -1.8792 25 6 1.4398 -4.5257 -1.4580 26 6 0.8370 -4.6125 -2.8829 27 8 0.2107 -3.3387 -3.1034 28 6 0.8220 -2.3430 -2.2748 29 1 -0.3633 0.1118 1.0215 30 1 -0.3634 0.8288 -0.6076 31 1 -0.3633 -0.9406 -0.4139 32 1 4.9965 -1.4355 2.0758 33 1 4.0257 -2.7601 1.3881 34 1 6.0490 -3.7187 0.3438 35 1 6.2799 -3.5463 2.1007 36 1 9.4161 -2.3046 0.7236 37 1 8.6885 -3.4387 1.8867 38 1 11.2199 -5.5756 0.4268 39 1 7.0916 -2.0952 -1.1628 40 1 8.0624 -0.7707 -0.4751 41 1 5.8082 0.0155 -1.1877 42 1 6.0389 0.1882 0.5690 43 1 0.8970 -2.5856 0.4256 44 1 2.5939 -3.0880 0.6163 45 1 0.6821 -4.7184 -0.6986 46 1 2.2852 -5.2046 -1.3472 47 1 0.0973 -5.4115 -2.9327 48 1 1.6237 -4.7797 -3.6185 49 1 1.2818 -1.5754 -2.8973 50 1 0.0726 -1.8929 -1.6236 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601880096.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:41:10 Heat of formation + Delta-G solvation = 56.391570 kcal Electronic energy + Delta-G solvation = -30681.595315 eV Core-core repulsion = 26745.712749 eV Total energy + Delta-G solvation = -3935.882566 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -43.06781 -39.81992 -38.94083 -35.88389 -35.37933 -32.69096 -32.56908 -31.64278 -30.64948 -29.82426 -28.50198 -26.88274 -26.49120 -25.04785 -23.32246 -22.96463 -22.25707 -21.58952 -21.02230 -20.46937 -19.26572 -17.58493 -17.11169 -16.81184 -16.47344 -16.16150 -15.79889 -15.13601 -15.05693 -14.82319 -14.55701 -14.36424 -14.05388 -13.92272 -13.78662 -13.43878 -13.26910 -13.01867 -12.95282 -12.77067 -12.41413 -12.14392 -12.03479 -11.85066 -11.57507 -11.29979 -11.22648 -11.18738 -11.00869 -10.91632 -10.74765 -10.58255 -10.49835 -10.30843 -10.13682 -9.94153 -9.83864 -9.68040 -9.56971 -8.51324 -8.17145 -7.31491 -6.10700 -4.20092 1.69127 2.10377 2.84019 3.20069 3.29056 3.31237 3.47288 3.67623 3.93370 4.10345 4.22688 4.29464 4.33386 4.56747 4.59154 4.68679 4.80107 4.81816 4.92197 4.99435 5.07054 5.15830 5.19731 5.21897 5.32156 5.36458 5.39688 5.42836 5.52694 5.53144 5.62258 5.63455 5.67607 5.79048 5.88510 5.90500 5.99239 6.12946 6.42919 6.50710 6.58388 6.59878 6.70245 6.83321 7.16778 7.25158 7.44079 7.81262 7.91124 8.13369 8.19455 8.78606 8.90028 9.47251 10.94598 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.011571 B = 0.003708 C = 0.002984 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2419.166530 B = 7549.081065 C = 9381.289829 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 C 0.164 3.836 3 N -0.283 5.283 4 N -0.323 5.323 5 C 0.372 3.628 6 N -0.453 5.453 7 C 0.059 3.941 8 C 0.067 3.933 9 N -0.543 5.543 10 C 0.187 3.813 11 C -0.551 4.551 12 H 0.059 0.941 13 C 0.066 3.934 14 N -0.889 5.889 15 Si 0.888 3.112 16 H -0.274 1.274 17 H -0.283 1.283 18 H -0.284 1.284 19 C 0.062 3.938 20 C 0.077 3.923 21 N -0.480 5.480 22 C 0.119 3.881 23 C -0.139 4.139 24 H 0.103 0.897 25 C -0.148 4.148 26 C 0.051 3.949 27 O -0.383 6.383 28 C 0.053 3.947 29 H 0.084 0.916 30 H 0.094 0.906 31 H 0.077 0.923 32 H 0.051 0.949 33 H 0.070 0.930 34 H 0.053 0.947 35 H 0.077 0.923 36 H 0.030 0.970 37 H 0.036 0.964 38 H 0.262 0.738 39 H 0.049 0.951 40 H 0.079 0.921 41 H 0.081 0.919 42 H 0.058 0.942 43 H 0.098 0.902 44 H 0.104 0.896 45 H 0.082 0.918 46 H 0.093 0.907 47 H 0.088 0.912 48 H 0.064 0.936 49 H 0.067 0.933 50 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.837 2.035 -1.095 21.959 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.104 4.104 3 N -0.122 5.122 4 N -0.167 5.167 5 C 0.016 3.984 6 N -0.177 5.177 7 C -0.068 4.068 8 C -0.062 4.062 9 N -0.267 5.267 10 C 0.062 3.938 11 C -0.590 4.590 12 H 0.077 0.923 13 C -0.137 4.137 14 N -0.528 5.528 15 Si 0.716 3.284 16 H -0.199 1.199 17 H -0.209 1.209 18 H -0.210 1.210 19 C -0.067 4.067 20 C -0.050 4.050 21 N -0.176 5.176 22 C -0.004 4.004 23 C -0.159 4.159 24 H 0.121 0.879 25 C -0.186 4.186 26 C -0.025 4.025 27 O -0.303 6.303 28 C -0.023 4.023 29 H 0.103 0.897 30 H 0.113 0.887 31 H 0.095 0.905 32 H 0.070 0.930 33 H 0.088 0.912 34 H 0.071 0.929 35 H 0.095 0.905 36 H 0.048 0.952 37 H 0.054 0.946 38 H 0.072 0.928 39 H 0.068 0.932 40 H 0.097 0.903 41 H 0.099 0.901 42 H 0.077 0.923 43 H 0.116 0.884 44 H 0.122 0.878 45 H 0.101 0.899 46 H 0.111 0.889 47 H 0.106 0.894 48 H 0.082 0.918 49 H 0.086 0.914 50 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -21.357 3.429 -1.168 21.662 hybrid contribution 0.015 -2.419 -0.746 2.532 sum -21.342 1.010 -1.914 21.451 Atomic orbital electron populations 1.20322 0.84083 1.04111 1.04151 1.24659 0.96374 0.82370 1.06951 1.73956 0.96485 1.23999 1.17806 1.74677 1.11739 1.06951 1.23362 1.22819 0.84675 0.89529 1.01426 1.58949 0.99105 1.24946 1.34742 1.22507 0.99634 0.96588 0.88058 1.21919 0.88282 0.94037 1.01947 1.62723 1.03923 1.27584 1.32485 1.19752 0.85785 0.91191 0.97082 1.21764 1.06480 1.14078 1.16639 0.92317 1.24956 0.95259 0.97571 0.95906 1.69949 1.09644 1.35842 1.37341 0.86605 0.78084 0.81680 0.82035 1.19875 1.20899 1.20960 1.22028 0.94999 0.96413 0.93255 1.22239 0.86724 0.93953 1.02059 1.46181 1.05824 1.08033 1.57569 1.21931 1.02569 0.78287 0.97568 1.23140 1.01740 0.95602 0.95374 0.87884 1.23276 1.01959 0.95227 0.98123 1.23388 0.97378 0.86351 0.95386 1.88409 1.59493 1.17940 1.64424 1.23358 0.94448 0.91439 0.93070 0.89695 0.88702 0.90453 0.93031 0.91206 0.92856 0.90480 0.95180 0.94628 0.92794 0.93234 0.90296 0.90085 0.92321 0.88416 0.87761 0.89918 0.88852 0.89401 0.91790 0.91438 0.90857 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.48 9.94 36.00 0.36 -0.12 16 2 C 0.16 1.96 7.80 -154.02 -1.20 0.76 16 3 N -0.28 -4.48 12.18 32.99 0.40 -4.08 16 4 N -0.32 -5.56 11.37 30.31 0.34 -5.21 16 5 C 0.37 5.60 7.06 -318.87 -2.25 3.35 16 6 N -0.45 -6.94 4.73 -174.35 -0.82 -7.77 16 7 C 0.06 0.86 5.47 -3.77 -0.02 0.84 16 8 C 0.07 1.19 5.24 -3.77 -0.02 1.17 16 9 N -0.54 -10.96 4.92 -235.91 -1.16 -12.12 16 10 C 0.19 4.57 5.14 -4.98 -0.03 4.55 16 11 C -0.55 -14.33 7.66 -34.44 -0.26 -14.59 16 12 H 0.06 1.52 5.82 -52.49 -0.31 1.22 16 13 C 0.07 1.78 5.46 -17.82 -0.10 1.68 16 14 N -0.89 -25.30 13.29 55.43 0.74 -24.57 16 15 Si 0.89 20.64 29.54 -169.99 -5.02 15.62 16 16 H -0.27 -6.27 7.11 56.52 0.40 -5.86 16 17 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 18 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 19 C 0.06 1.15 5.32 -3.77 -0.02 1.13 16 20 C 0.08 1.27 4.98 -3.77 -0.02 1.25 16 21 N -0.48 -5.65 2.64 -114.09 -0.30 -5.96 16 22 C 0.12 1.00 5.15 -4.04 -0.02 0.98 16 23 C -0.14 -1.23 3.25 -88.67 -0.29 -1.52 16 24 H 0.10 1.17 8.14 -51.93 -0.42 0.74 16 25 C -0.15 -1.04 6.62 -24.48 -0.16 -1.20 16 26 C 0.05 0.42 7.78 38.19 0.30 0.71 16 27 O -0.38 -4.07 11.36 -35.23 -0.40 -4.47 16 28 C 0.05 0.50 6.99 37.88 0.26 0.77 16 29 H 0.08 0.49 8.14 -51.93 -0.42 0.06 16 30 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.08 0.42 4.65 -51.93 -0.24 0.17 16 32 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 33 H 0.07 0.84 5.36 -51.93 -0.28 0.56 16 34 H 0.05 1.03 6.62 -51.93 -0.34 0.69 16 35 H 0.08 1.35 8.14 -51.93 -0.42 0.92 16 36 H 0.03 0.79 8.12 -51.93 -0.42 0.37 16 37 H 0.04 0.94 8.14 -51.93 -0.42 0.51 16 38 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 39 H 0.05 1.01 6.78 -51.93 -0.35 0.66 16 40 H 0.08 1.45 8.12 -51.93 -0.42 1.03 16 41 H 0.08 1.30 8.13 -51.93 -0.42 0.88 16 42 H 0.06 1.01 8.10 -51.93 -0.42 0.59 16 43 H 0.10 0.57 7.37 -51.93 -0.38 0.18 16 44 H 0.10 0.87 5.47 -51.93 -0.28 0.59 16 45 H 0.08 0.45 8.04 -51.93 -0.42 0.03 16 46 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 47 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 48 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 49 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 50 H 0.07 0.58 4.62 -51.93 -0.24 0.34 16 LS Contribution 382.10 15.07 5.76 5.76 Total: -1.00 -31.75 382.10 -11.83 -43.58 By element: Atomic # 1 Polarization: 7.35 SS G_CDS: -7.89 Total: -0.54 kcal Atomic # 6 Polarization: 3.23 SS G_CDS: -3.47 Total: -0.24 kcal Atomic # 7 Polarization: -58.90 SS G_CDS: -0.80 Total: -59.71 kcal Atomic # 8 Polarization: -4.07 SS G_CDS: -0.40 Total: -4.47 kcal Atomic # 14 Polarization: 20.64 SS G_CDS: -5.02 Total: 15.62 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -31.75 -11.83 -43.58 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601880096.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.974 kcal (2) G-P(sol) polarization free energy of solvation -31.754 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.220 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.828 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.582 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.392 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds