Wall clock time and date at job start Tue Mar 31 2020 20:36:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52999 * 109.47229 * 2 1 4 4 C 1.52994 * 109.47234 * 120.00727 * 2 1 3 5 5 C 1.52994 * 109.47560 * 64.99657 * 4 2 1 6 6 N 1.46493 * 109.47507 * 180.02562 * 5 4 2 7 7 C 1.34819 * 126.59742 * 124.99724 * 6 5 4 8 8 C 1.36596 * 106.84169 * 180.02562 * 7 6 5 9 9 C 1.47520 * 125.77284 * 179.97438 * 8 7 6 10 10 O 1.21593 * 120.00133 * 353.28388 * 9 8 7 11 11 N 1.34777 * 120.00055 * 173.27963 * 9 8 7 12 12 C 1.47077 * 120.88327 * 183.47212 * 11 9 8 13 13 C 1.53692 * 108.27758 * 128.75748 * 12 11 9 14 14 N 1.46896 * 109.25860 * 54.08749 * 13 12 11 15 15 C 1.46892 * 111.00525 * 172.61014 * 14 13 12 16 16 C 1.50702 * 109.47067 * 294.30065 * 15 14 13 17 17 H 1.08003 * 119.99926 * 359.97438 * 16 15 14 18 18 C 1.37875 * 120.00427 * 179.97438 * 16 15 14 19 19 N 1.31515 * 119.99984 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 120.00366 * 179.97438 * 18 16 15 21 21 H 1.48500 * 109.46941 * 89.99855 * 20 18 16 22 22 H 1.48494 * 109.47175 * 209.99998 * 20 18 16 23 23 H 1.48496 * 109.46993 * 330.00285 * 20 18 16 24 24 C 1.46903 * 111.26422 * 296.75647 * 14 13 12 25 25 C 1.47082 * 120.88357 * 3.75946 * 11 9 8 26 26 N 1.34403 * 108.45893 * 359.97438 * 8 7 6 27 27 N 1.28760 * 109.52276 * 0.02562 * 26 8 7 28 28 H 1.08995 * 109.47425 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.46803 * 299.99797 * 1 2 3 30 30 H 1.09007 * 109.47009 * 59.99596 * 1 2 3 31 31 H 1.09005 * 109.46914 * 240.00678 * 2 1 3 32 32 H 1.09002 * 109.46739 * 180.02562 * 3 2 1 33 33 H 1.09007 * 109.47455 * 300.00130 * 3 2 1 34 34 H 1.09000 * 109.47062 * 60.00361 * 3 2 1 35 35 H 1.09003 * 109.46914 * 304.99195 * 4 2 1 36 36 H 1.09005 * 109.46921 * 184.99709 * 4 2 1 37 37 H 1.09003 * 109.47384 * 59.99826 * 5 4 2 38 38 H 1.09005 * 109.47045 * 299.99975 * 5 4 2 39 39 H 1.07995 * 126.57929 * 359.97438 * 7 6 5 40 40 H 1.08998 * 109.63687 * 248.53093 * 12 11 9 41 41 H 1.09003 * 109.62505 * 9.10927 * 12 11 9 42 42 H 1.09003 * 109.64944 * 294.08031 * 13 12 11 43 43 H 1.09007 * 109.42599 * 173.95241 * 13 12 11 44 44 H 1.09000 * 109.47350 * 54.29586 * 15 14 13 45 45 H 1.08998 * 109.47712 * 174.29826 * 15 14 13 46 46 H 0.96997 * 120.00408 * 180.02562 * 19 18 16 47 47 H 1.08992 * 109.49818 * 303.14158 * 24 14 13 48 48 H 1.09006 * 109.51100 * 183.07519 * 24 14 13 49 49 H 1.09002 * 109.62697 * 350.89146 * 25 11 9 50 50 H 1.08995 * 109.63258 * 111.46914 * 25 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7214 1.2491 5 6 1.6353 -2.1955 1.1878 6 7 2.1231 -2.8861 2.3841 7 6 1.3857 -3.6053 3.2539 8 6 2.2424 -4.0657 4.2130 9 6 1.8719 -4.9009 5.3712 10 8 0.7014 -5.1358 5.6017 11 7 2.8309 -5.4037 6.1737 12 6 2.4890 -6.3002 7.2884 13 6 3.3678 -7.5567 7.1834 14 7 4.7798 -7.1565 7.1197 15 6 5.6629 -8.3279 7.1950 16 6 5.5265 -8.9736 8.5498 17 1 4.8515 -8.5554 9.2819 18 6 6.2633 -10.0983 8.8548 19 7 7.0856 -10.6074 7.9636 20 14 6.0947 -10.8983 10.5344 21 1 5.0174 -11.9194 10.4904 22 1 7.3778 -11.5480 10.9043 23 1 5.7549 -9.8634 11.5437 24 6 5.0555 -6.3660 5.9126 25 6 4.2465 -5.0655 5.9619 26 7 3.4800 -3.6291 3.9231 27 7 3.4468 -2.9260 2.8449 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 1.8933 -0.5138 -0.8901 32 1 3.1301 1.4424 -0.0005 33 1 1.6767 1.9564 -0.8900 34 1 1.6768 1.9563 0.8900 35 1 1.6055 -0.2619 2.1369 36 1 3.1264 -0.6445 1.2949 37 1 2.0698 -2.6551 0.3000 38 1 0.5489 -2.2724 1.1419 39 1 0.3216 -3.7827 3.2026 40 1 2.6783 -5.7954 8.2357 41 1 1.4377 -6.5806 7.2235 42 1 3.1063 -8.1127 6.2830 43 1 3.2072 -8.1856 8.0591 44 1 5.3839 -9.0436 6.4217 45 1 6.6959 -8.0145 7.0443 46 1 7.6038 -11.3989 8.1781 47 1 4.7706 -6.9384 5.0299 48 1 6.1190 -6.1313 5.8662 49 1 4.3578 -4.5292 5.0195 50 1 4.6016 -4.4442 6.7840 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602208388.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:36:04 Heat of formation + Delta-G solvation = 71.231566 kcal Electronic energy + Delta-G solvation = -28729.745807 eV Core-core repulsion = 24794.506751 eV Total energy + Delta-G solvation = -3935.239056 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -42.46018 -39.61188 -37.77935 -37.36671 -34.80977 -34.15983 -32.33893 -31.39717 -30.71698 -29.67352 -28.12920 -27.77721 -25.56079 -25.16864 -23.82735 -22.84749 -22.14451 -21.72234 -20.73263 -20.46245 -19.05345 -17.56594 -16.60681 -16.36287 -16.34025 -16.03072 -15.69318 -15.17053 -14.98595 -14.68396 -14.39219 -14.31612 -14.22429 -13.79481 -13.73534 -13.62203 -13.45847 -12.93844 -12.79994 -12.63243 -12.48872 -12.34323 -12.01999 -11.99777 -11.59500 -11.42075 -11.30927 -11.21538 -11.15329 -10.81004 -10.73626 -10.64532 -10.59129 -10.47315 -10.31387 -9.91706 -9.61491 -9.46267 -9.16008 -8.43983 -8.33332 -7.21760 -6.00569 -4.02103 0.93073 1.59750 1.73328 3.12514 3.32942 3.33963 3.40137 3.44638 3.81156 3.99698 4.10822 4.23426 4.36288 4.44272 4.49310 4.59689 4.65369 4.75660 4.94380 4.97838 5.02516 5.08116 5.17627 5.25898 5.28923 5.34052 5.35896 5.39613 5.53311 5.59657 5.63016 5.70015 5.74284 5.78194 5.86317 5.96129 6.06873 6.09152 6.39871 6.48418 6.56075 6.62996 6.84104 7.31631 7.36229 7.56343 7.79332 7.82239 8.10003 8.20695 8.26524 8.56158 9.05384 9.62149 11.10243 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.032114 B = 0.001934 C = 0.001867 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 871.680782 B =14471.723547 C =14996.826005 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.093 4.093 3 C -0.148 4.148 4 C -0.129 4.129 5 C 0.119 3.881 6 N -0.359 5.359 7 C 0.090 3.910 8 C -0.090 4.090 9 C 0.598 3.402 10 O -0.552 6.552 11 N -0.588 5.588 12 C 0.115 3.885 13 C 0.052 3.948 14 N -0.537 5.537 15 C 0.193 3.807 16 C -0.508 4.508 17 H 0.064 0.936 18 C 0.055 3.945 19 N -0.898 5.898 20 Si 0.898 3.102 21 H -0.281 1.281 22 H -0.287 1.287 23 H -0.273 1.273 24 C 0.043 3.957 25 C 0.078 3.922 26 N -0.202 5.202 27 N -0.065 5.065 28 H 0.056 0.944 29 H 0.058 0.942 30 H 0.058 0.942 31 H 0.076 0.924 32 H 0.058 0.942 33 H 0.058 0.942 34 H 0.056 0.944 35 H 0.073 0.927 36 H 0.083 0.917 37 H 0.099 0.901 38 H 0.106 0.894 39 H 0.204 0.796 40 H 0.075 0.925 41 H 0.088 0.912 42 H 0.024 0.976 43 H 0.097 0.903 44 H -0.010 1.010 45 H 0.032 0.968 46 H 0.261 0.739 47 H 0.023 0.977 48 H 0.080 0.920 49 H 0.135 0.865 50 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.749 22.165 -18.003 31.693 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.112 4.112 3 C -0.205 4.205 4 C -0.168 4.168 5 C -0.002 4.002 6 N -0.144 5.144 7 C -0.066 4.066 8 C -0.229 4.229 9 C 0.384 3.616 10 O -0.430 6.430 11 N -0.319 5.319 12 C -0.007 4.007 13 C -0.077 4.077 14 N -0.262 5.262 15 C 0.068 3.932 16 C -0.546 4.546 17 H 0.082 0.918 18 C -0.146 4.146 19 N -0.538 5.538 20 Si 0.726 3.274 21 H -0.208 1.208 22 H -0.213 1.213 23 H -0.197 1.197 24 C -0.086 4.086 25 C -0.046 4.046 26 N -0.075 5.075 27 N -0.044 5.044 28 H 0.075 0.925 29 H 0.077 0.923 30 H 0.078 0.922 31 H 0.094 0.906 32 H 0.077 0.923 33 H 0.077 0.923 34 H 0.075 0.925 35 H 0.091 0.909 36 H 0.102 0.898 37 H 0.117 0.883 38 H 0.124 0.876 39 H 0.220 0.780 40 H 0.093 0.907 41 H 0.106 0.894 42 H 0.042 0.958 43 H 0.115 0.885 44 H 0.008 0.992 45 H 0.050 0.950 46 H 0.071 0.929 47 H 0.041 0.959 48 H 0.098 0.902 49 H 0.152 0.848 50 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -12.702 22.662 -17.799 31.491 hybrid contribution -1.041 -1.415 0.234 1.772 sum -13.742 21.247 -17.565 30.803 Atomic orbital electron populations 1.21969 0.94939 1.01901 1.02403 1.21067 0.96022 0.96762 0.97395 1.21825 1.01340 0.95292 1.02079 1.21982 1.03226 0.92182 0.99375 1.22205 1.00658 0.93309 0.83980 1.50529 1.07927 1.35657 1.20326 1.23335 0.99905 0.93585 0.89822 1.21527 0.89624 1.09841 1.01862 1.16813 0.85097 0.79012 0.80674 1.90768 1.17754 1.61395 1.73069 1.48047 1.07678 1.46352 1.29798 1.22024 0.99840 0.90487 0.88378 1.22410 0.88902 0.94674 1.01706 1.62093 1.03729 1.25037 1.35322 1.19723 0.91566 0.85163 0.96745 1.21163 1.24306 1.10092 0.99079 0.91784 1.24995 0.95285 0.97067 0.97283 1.69960 1.26680 1.22753 1.34401 0.86495 0.77318 0.79410 0.84183 1.20772 1.21303 1.19744 1.22380 0.99804 0.94142 0.92273 1.22951 0.78393 0.97788 1.05431 1.74258 1.19599 1.06614 1.07005 1.82003 0.95734 1.18727 1.07944 0.92520 0.92333 0.92243 0.90588 0.92328 0.92336 0.92499 0.90857 0.89806 0.88308 0.87609 0.77953 0.90663 0.89364 0.95802 0.88508 0.99195 0.95024 0.92950 0.95864 0.90154 0.84808 0.91060 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.43 8.95 37.16 0.33 -0.10 16 2 C -0.09 -0.31 2.92 -90.62 -0.26 -0.57 16 3 C -0.15 -0.55 9.19 37.16 0.34 -0.21 16 4 C -0.13 -0.59 4.89 -26.74 -0.13 -0.72 16 5 C 0.12 0.54 6.29 -4.05 -0.03 0.52 16 6 N -0.36 -3.17 3.69 -61.07 -0.23 -3.40 16 7 C 0.09 0.88 11.28 -16.83 -0.19 0.69 16 8 C -0.09 -1.22 6.77 -83.55 -0.57 -1.78 16 9 C 0.60 9.71 7.70 -12.48 -0.10 9.61 16 10 O -0.55 -9.82 16.34 5.28 0.09 -9.73 16 11 N -0.59 -9.93 3.00 -173.42 -0.52 -10.45 16 12 C 0.11 1.98 6.62 -3.37 -0.02 1.96 16 13 C 0.05 1.05 5.47 -3.47 -0.02 1.03 16 14 N -0.54 -11.81 4.62 -235.47 -1.09 -12.90 16 15 C 0.19 5.09 4.72 -4.98 -0.02 5.07 16 16 C -0.51 -14.28 8.41 -34.44 -0.29 -14.57 16 17 H 0.06 1.77 7.13 -52.48 -0.37 1.39 16 18 C 0.05 1.57 5.46 -17.82 -0.10 1.47 16 19 N -0.90 -26.88 13.29 55.43 0.74 -26.14 16 20 Si 0.90 21.74 29.54 -169.99 -5.02 16.72 16 21 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 22 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 23 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 24 C 0.04 0.82 5.62 -3.70 -0.02 0.80 16 25 C 0.08 1.28 6.44 -3.60 -0.02 1.25 16 26 N -0.20 -2.83 8.66 32.85 0.28 -2.54 16 27 N -0.06 -0.79 13.65 60.35 0.82 0.03 16 28 H 0.06 0.11 6.57 -51.93 -0.34 -0.23 16 29 H 0.06 0.19 8.14 -51.93 -0.42 -0.24 16 30 H 0.06 0.16 8.14 -51.93 -0.42 -0.26 16 31 H 0.08 0.22 8.14 -51.93 -0.42 -0.20 16 32 H 0.06 0.23 8.14 -51.93 -0.42 -0.19 16 33 H 0.06 0.19 8.14 -51.93 -0.42 -0.23 16 34 H 0.06 0.23 8.14 -51.93 -0.42 -0.20 16 35 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 36 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 37 H 0.10 0.36 8.14 -51.93 -0.42 -0.06 16 38 H 0.11 0.23 6.51 -51.93 -0.34 -0.11 16 39 H 0.20 1.34 8.06 -52.49 -0.42 0.92 16 40 H 0.08 1.26 8.14 -51.93 -0.42 0.84 16 41 H 0.09 1.47 7.08 -51.93 -0.37 1.10 16 42 H 0.02 0.50 8.14 -51.93 -0.42 0.07 16 43 H 0.10 2.04 6.67 -51.93 -0.35 1.69 16 44 H -0.01 -0.28 8.12 -51.93 -0.42 -0.70 16 45 H 0.03 0.89 7.97 -51.93 -0.41 0.47 16 46 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 47 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 48 H 0.08 1.48 7.99 -51.93 -0.41 1.06 16 49 H 0.14 2.08 3.74 -118.62 -0.44 1.64 16 50 H 0.07 1.16 8.14 -51.93 -0.42 0.73 16 LS Contribution 398.82 15.07 6.01 6.01 Total: -1.00 -33.71 398.82 -8.52 -42.24 By element: Atomic # 1 Polarization: 4.23 SS G_CDS: -8.52 Total: -4.29 kcal Atomic # 6 Polarization: 5.54 SS G_CDS: -1.09 Total: 4.45 kcal Atomic # 7 Polarization: -55.40 SS G_CDS: 0.01 Total: -55.39 kcal Atomic # 8 Polarization: -9.82 SS G_CDS: 0.09 Total: -9.73 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -5.02 Total: 16.72 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -33.71 -8.52 -42.24 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602208388.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.470 kcal (2) G-P(sol) polarization free energy of solvation -33.715 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.755 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.523 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.238 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.232 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds