Wall clock time and date at job start Tue Mar 31 2020 20:36:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52999 * 109.47229 * 2 1 4 4 C 1.52994 * 109.47234 * 120.00727 * 2 1 3 5 5 C 1.52994 * 109.47560 * 64.99657 * 4 2 1 6 6 N 1.46493 * 109.47507 * 180.02562 * 5 4 2 7 7 C 1.34819 * 126.59742 * 124.99724 * 6 5 4 8 8 C 1.36596 * 106.84169 * 180.02562 * 7 6 5 9 9 C 1.47520 * 125.77284 * 179.97438 * 8 7 6 10 10 O 1.21593 * 120.00133 * 353.28388 * 9 8 7 11 11 N 1.34777 * 120.00055 * 173.27963 * 9 8 7 12 12 C 1.47077 * 120.88327 * 183.47212 * 11 9 8 13 13 C 1.53692 * 108.27758 * 128.75748 * 12 11 9 14 14 N 1.46896 * 109.25860 * 54.08749 * 13 12 11 15 15 C 1.46892 * 111.00525 * 172.61014 * 14 13 12 16 16 C 1.50702 * 109.47067 * 294.30065 * 15 14 13 17 17 H 1.08003 * 119.99926 * 359.97438 * 16 15 14 18 18 C 1.37875 * 120.00427 * 179.97438 * 16 15 14 19 19 N 1.31515 * 119.99984 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 120.00366 * 179.97438 * 18 16 15 21 21 H 1.48500 * 109.46941 * 89.99855 * 20 18 16 22 22 H 1.48494 * 109.47175 * 209.99998 * 20 18 16 23 23 H 1.48496 * 109.46993 * 330.00285 * 20 18 16 24 24 C 1.46903 * 111.26422 * 296.75647 * 14 13 12 25 25 C 1.47082 * 120.88357 * 3.75946 * 11 9 8 26 26 N 1.34403 * 108.45893 * 359.97438 * 8 7 6 27 27 N 1.28760 * 109.52276 * 0.02562 * 26 8 7 28 28 H 1.08995 * 109.47425 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.46803 * 299.99797 * 1 2 3 30 30 H 1.09007 * 109.47009 * 59.99596 * 1 2 3 31 31 H 1.09005 * 109.46914 * 240.00678 * 2 1 3 32 32 H 1.09002 * 109.46739 * 180.02562 * 3 2 1 33 33 H 1.09007 * 109.47455 * 300.00130 * 3 2 1 34 34 H 1.09000 * 109.47062 * 60.00361 * 3 2 1 35 35 H 1.09003 * 109.46914 * 304.99195 * 4 2 1 36 36 H 1.09005 * 109.46921 * 184.99709 * 4 2 1 37 37 H 1.09003 * 109.47384 * 59.99826 * 5 4 2 38 38 H 1.09005 * 109.47045 * 299.99975 * 5 4 2 39 39 H 1.07995 * 126.57929 * 359.97438 * 7 6 5 40 40 H 1.08998 * 109.63687 * 248.53093 * 12 11 9 41 41 H 1.09003 * 109.62505 * 9.10927 * 12 11 9 42 42 H 1.09003 * 109.64944 * 294.08031 * 13 12 11 43 43 H 1.09007 * 109.42599 * 173.95241 * 13 12 11 44 44 H 1.09000 * 109.47350 * 54.29586 * 15 14 13 45 45 H 1.08998 * 109.47712 * 174.29826 * 15 14 13 46 46 H 0.96997 * 120.00408 * 180.02562 * 19 18 16 47 47 H 1.08992 * 109.49818 * 303.14158 * 24 14 13 48 48 H 1.09006 * 109.51100 * 183.07519 * 24 14 13 49 49 H 1.09002 * 109.62697 * 350.89146 * 25 11 9 50 50 H 1.08995 * 109.63258 * 111.46914 * 25 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7214 1.2491 5 6 1.6353 -2.1955 1.1878 6 7 2.1231 -2.8861 2.3841 7 6 1.3857 -3.6053 3.2539 8 6 2.2424 -4.0657 4.2130 9 6 1.8719 -4.9009 5.3712 10 8 0.7014 -5.1358 5.6017 11 7 2.8309 -5.4037 6.1737 12 6 2.4890 -6.3002 7.2884 13 6 3.3678 -7.5567 7.1834 14 7 4.7798 -7.1565 7.1197 15 6 5.6629 -8.3279 7.1950 16 6 5.5265 -8.9736 8.5498 17 1 4.8515 -8.5554 9.2819 18 6 6.2633 -10.0983 8.8548 19 7 7.0856 -10.6074 7.9636 20 14 6.0947 -10.8983 10.5344 21 1 5.0174 -11.9194 10.4904 22 1 7.3778 -11.5480 10.9043 23 1 5.7549 -9.8634 11.5437 24 6 5.0555 -6.3660 5.9126 25 6 4.2465 -5.0655 5.9619 26 7 3.4800 -3.6291 3.9231 27 7 3.4468 -2.9260 2.8449 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 1.8933 -0.5138 -0.8901 32 1 3.1301 1.4424 -0.0005 33 1 1.6767 1.9564 -0.8900 34 1 1.6768 1.9563 0.8900 35 1 1.6055 -0.2619 2.1369 36 1 3.1264 -0.6445 1.2949 37 1 2.0698 -2.6551 0.3000 38 1 0.5489 -2.2724 1.1419 39 1 0.3216 -3.7827 3.2026 40 1 2.6783 -5.7954 8.2357 41 1 1.4377 -6.5806 7.2235 42 1 3.1063 -8.1127 6.2830 43 1 3.2072 -8.1856 8.0591 44 1 5.3839 -9.0436 6.4217 45 1 6.6959 -8.0145 7.0443 46 1 7.6038 -11.3989 8.1781 47 1 4.7706 -6.9384 5.0299 48 1 6.1190 -6.1313 5.8662 49 1 4.3578 -4.5292 5.0195 50 1 4.6016 -4.4442 6.7840 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602208388.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:36:01 Heat of formation + Delta-G solvation = 48.769466 kcal Electronic energy + Delta-G solvation = -28730.719837 eV Core-core repulsion = 24794.506751 eV Total energy + Delta-G solvation = -3936.213086 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -43.34446 -40.93944 -38.92713 -38.14896 -36.08303 -35.23017 -34.35049 -32.53043 -31.83731 -30.53682 -29.81066 -28.01264 -27.33955 -25.79355 -25.14998 -24.24929 -23.53566 -22.82176 -21.93725 -20.94164 -20.31509 -18.68478 -18.40249 -17.60767 -17.24468 -17.07203 -16.65351 -16.26433 -16.15985 -16.06909 -15.77868 -15.36652 -15.33738 -15.03034 -14.94087 -14.57415 -14.27505 -14.11751 -14.05752 -13.70387 -13.29021 -13.18696 -13.12886 -12.94985 -12.76773 -12.68699 -12.57630 -12.41381 -12.32781 -12.19568 -11.92527 -11.84631 -11.63506 -11.53489 -11.47789 -11.35790 -11.27976 -10.85496 -10.60860 -10.39549 -9.76172 -9.05589 -8.19754 -6.30111 0.13314 0.54396 1.07149 1.42841 1.44255 1.56071 1.89030 2.16419 2.41487 3.00784 3.12702 3.26787 3.29822 3.64242 3.76125 3.90259 3.94410 4.02049 4.03204 4.06697 4.23439 4.24189 4.30732 4.35469 4.38955 4.44375 4.51242 4.64552 4.74390 4.80047 4.85269 4.86860 4.93441 4.98174 5.01367 5.06119 5.09746 5.14264 5.21476 5.25739 5.31477 5.42777 5.45517 5.49809 5.55919 5.64898 6.03098 6.19981 6.35850 6.57662 6.79617 6.85367 7.05330 7.39590 8.91537 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.032114 B = 0.001934 C = 0.001867 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 871.680782 B =14471.723547 C =14996.826005 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.088 4.088 3 C -0.151 4.151 4 C -0.124 4.124 5 C 0.110 3.890 6 N -0.343 5.343 7 C 0.115 3.885 8 C -0.122 4.122 9 C 0.601 3.399 10 O -0.569 6.569 11 N -0.598 5.598 12 C 0.126 3.874 13 C 0.056 3.944 14 N -0.539 5.539 15 C 0.208 3.792 16 C -0.523 4.523 17 H 0.067 0.933 18 C 0.001 3.999 19 N -0.935 5.935 20 Si 0.972 3.028 21 H -0.273 1.273 22 H -0.283 1.283 23 H -0.263 1.263 24 C 0.044 3.956 25 C 0.091 3.909 26 N -0.226 5.226 27 N -0.082 5.082 28 H 0.069 0.931 29 H 0.053 0.947 30 H 0.060 0.940 31 H 0.084 0.916 32 H 0.051 0.949 33 H 0.063 0.937 34 H 0.051 0.949 35 H 0.065 0.935 36 H 0.066 0.934 37 H 0.114 0.886 38 H 0.140 0.860 39 H 0.239 0.761 40 H 0.083 0.917 41 H 0.097 0.903 42 H 0.011 0.989 43 H 0.085 0.915 44 H -0.042 1.042 45 H 0.008 0.992 46 H 0.264 0.736 47 H 0.013 0.987 48 H 0.082 0.918 49 H 0.150 0.850 50 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.756 23.345 -18.563 33.732 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.107 4.107 3 C -0.208 4.208 4 C -0.162 4.162 5 C -0.009 4.009 6 N -0.128 5.128 7 C -0.043 4.043 8 C -0.261 4.261 9 C 0.388 3.612 10 O -0.449 6.449 11 N -0.328 5.328 12 C 0.004 3.996 13 C -0.073 4.073 14 N -0.264 5.264 15 C 0.082 3.918 16 C -0.561 4.561 17 H 0.085 0.915 18 C -0.197 4.197 19 N -0.576 5.576 20 Si 0.796 3.204 21 H -0.199 1.199 22 H -0.209 1.209 23 H -0.187 1.187 24 C -0.085 4.085 25 C -0.032 4.032 26 N -0.098 5.098 27 N -0.061 5.061 28 H 0.088 0.912 29 H 0.072 0.928 30 H 0.079 0.921 31 H 0.102 0.898 32 H 0.070 0.930 33 H 0.082 0.918 34 H 0.070 0.930 35 H 0.084 0.916 36 H 0.085 0.915 37 H 0.132 0.868 38 H 0.158 0.842 39 H 0.256 0.744 40 H 0.101 0.899 41 H 0.115 0.885 42 H 0.029 0.971 43 H 0.103 0.897 44 H -0.024 1.024 45 H 0.026 0.974 46 H 0.073 0.927 47 H 0.032 0.968 48 H 0.100 0.900 49 H 0.166 0.834 50 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -14.714 23.888 -18.395 33.549 hybrid contribution -0.464 -1.682 0.242 1.761 sum -15.178 22.206 -18.153 32.450 Atomic orbital electron populations 1.21977 0.94188 1.02753 1.02299 1.21028 0.96540 0.96169 0.96922 1.21849 1.00985 0.95845 1.02120 1.21910 1.02117 0.92408 0.99785 1.22692 1.02725 0.92737 0.82707 1.50813 1.06714 1.34603 1.20688 1.23813 1.00868 0.91495 0.88140 1.21361 0.90653 1.11567 1.02518 1.17086 0.84578 0.78686 0.80824 1.90746 1.18287 1.62216 1.73646 1.48097 1.07988 1.46677 1.30080 1.21845 0.99393 0.89251 0.89145 1.22375 0.88225 0.96156 1.00507 1.62040 1.04176 1.23150 1.37062 1.19388 0.91148 0.85911 0.95395 1.21464 1.24440 1.10585 0.99658 0.91474 1.25940 0.94712 0.97611 1.01464 1.70094 1.27521 1.23304 1.36637 0.85342 0.77489 0.78469 0.79068 1.19862 1.20855 1.18742 1.22459 1.00655 0.94842 0.90553 1.22884 0.77857 0.95958 1.06500 1.74082 1.20284 1.07457 1.07976 1.81925 0.97664 1.18891 1.07642 0.91172 0.92797 0.92066 0.89758 0.92958 0.91787 0.92991 0.91607 0.91524 0.86767 0.84235 0.74435 0.89884 0.88456 0.97057 0.89681 1.02399 0.97414 0.92716 0.96842 0.89959 0.83404 0.90668 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.44 8.95 71.98 0.64 0.21 16 2 C -0.09 -0.39 2.92 -10.79 -0.03 -0.42 16 3 C -0.15 -0.94 9.19 71.98 0.66 -0.28 16 4 C -0.12 -0.89 4.89 30.59 0.15 -0.74 16 5 C 0.11 0.64 6.29 86.38 0.54 1.18 16 6 N -0.34 -5.17 3.69 -347.12 -1.28 -6.45 16 7 C 0.11 1.92 11.28 83.85 0.95 2.87 16 8 C -0.12 -3.13 6.77 40.82 0.28 -2.85 16 9 C 0.60 18.84 7.70 86.69 0.67 19.50 16 10 O -0.57 -19.44 16.34 -4.01 -0.07 -19.50 16 11 N -0.60 -19.88 3.00 -820.83 -2.46 -22.35 16 12 C 0.13 4.30 6.62 86.50 0.57 4.88 16 13 C 0.06 2.31 5.47 86.54 0.47 2.79 16 14 N -0.54 -24.41 4.62 -898.90 -4.15 -28.56 16 15 C 0.21 11.44 4.72 85.56 0.40 11.84 16 16 C -0.52 -30.03 8.41 25.60 0.22 -29.81 16 17 H 0.07 3.74 7.13 -2.91 -0.02 3.71 16 18 C 0.00 0.04 5.46 84.65 0.46 0.50 16 19 N -0.94 -57.12 13.29 21.45 0.28 -56.83 16 20 Si 0.97 44.74 29.54 68.60 2.03 46.77 16 21 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16 22 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 23 H -0.26 -11.64 7.11 99.48 0.71 -10.93 16 24 C 0.04 1.71 5.62 86.38 0.49 2.19 16 25 C 0.09 2.98 6.44 86.35 0.56 3.54 16 26 N -0.23 -6.11 8.66 -50.00 -0.43 -6.54 16 27 N -0.08 -1.89 13.65 37.02 0.51 -1.39 16 28 H 0.07 0.01 6.57 -2.39 -0.02 -0.01 16 29 H 0.05 0.22 8.14 -2.39 -0.02 0.20 16 30 H 0.06 0.18 8.14 -2.38 -0.02 0.16 16 31 H 0.08 0.26 8.14 -2.38 -0.02 0.24 16 32 H 0.05 0.39 8.14 -2.39 -0.02 0.37 16 33 H 0.06 0.33 8.14 -2.38 -0.02 0.31 16 34 H 0.05 0.37 8.14 -2.39 -0.02 0.35 16 35 H 0.07 0.59 8.14 -2.39 -0.02 0.57 16 36 H 0.07 0.73 8.14 -2.38 -0.02 0.71 16 37 H 0.11 0.43 8.14 -2.39 -0.02 0.41 16 38 H 0.14 -0.06 6.51 -2.38 -0.02 -0.07 16 39 H 0.24 2.12 8.06 -2.91 -0.02 2.10 16 40 H 0.08 2.71 8.14 -2.39 -0.02 2.69 16 41 H 0.10 3.16 7.08 -2.39 -0.02 3.15 16 42 H 0.01 0.48 8.14 -2.39 -0.02 0.46 16 43 H 0.08 3.66 6.67 -2.38 -0.02 3.64 16 44 H -0.04 -2.51 8.12 -2.39 -0.02 -2.53 16 45 H 0.01 0.46 7.97 -2.39 -0.02 0.44 16 46 H 0.26 15.15 8.31 -92.71 -0.77 14.38 16 47 H 0.01 0.54 8.14 -2.39 -0.02 0.52 16 48 H 0.08 3.12 7.99 -2.38 -0.02 3.10 16 49 H 0.15 4.57 3.74 -88.68 -0.33 4.24 16 50 H 0.08 2.40 8.14 -2.39 -0.02 2.38 16 Total: -1.00 -74.40 398.82 2.05 -72.36 By element: Atomic # 1 Polarization: 6.51 SS G_CDS: 0.60 Total: 7.11 kcal Atomic # 6 Polarization: 8.37 SS G_CDS: 7.03 Total: 15.39 kcal Atomic # 7 Polarization: -114.58 SS G_CDS: -7.54 Total: -122.12 kcal Atomic # 8 Polarization: -19.44 SS G_CDS: -0.07 Total: -19.50 kcal Atomic # 14 Polarization: 44.74 SS G_CDS: 2.03 Total: 46.77 kcal Total: -74.40 2.05 -72.36 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602208388.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.128 kcal (2) G-P(sol) polarization free energy of solvation -74.404 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.724 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.046 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.359 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.769 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds