Wall clock time and date at job start Tue Mar 31 2020 20:57:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53005 * 109.47313 * 2 1 4 4 C 1.53006 * 109.47231 * 119.99926 * 2 1 3 5 5 N 1.46490 * 109.47373 * 174.99750 * 4 2 1 6 6 C 1.35849 * 126.05999 * 125.00284 * 5 4 2 7 7 C 1.35729 * 107.56069 * 180.02562 * 6 5 4 8 8 N 1.40853 * 126.07236 * 179.97438 * 7 6 5 9 9 C 1.34768 * 120.00202 * 179.97438 * 8 7 6 10 10 O 1.21601 * 120.00172 * 354.40110 * 9 8 7 11 11 N 1.34775 * 120.00033 * 174.40751 * 9 8 7 12 12 C 1.47086 * 120.88054 * 174.44661 * 11 9 8 13 13 C 1.53240 * 108.51739 * 128.79131 * 12 11 9 14 14 N 1.46893 * 109.34005 * 53.83281 * 13 12 11 15 15 C 1.46906 * 111.00260 * 172.74328 * 14 13 12 16 16 C 1.50696 * 109.46857 * 73.95792 * 15 14 13 17 17 H 1.07999 * 120.00281 * 4.78036 * 16 15 14 18 18 C 1.37881 * 119.99858 * 184.78589 * 16 15 14 19 19 N 1.31509 * 120.00294 * 359.97438 * 18 16 15 20 20 Si 1.86802 * 119.99962 * 180.02562 * 18 16 15 21 21 H 1.48497 * 109.47358 * 89.99382 * 20 18 16 22 22 H 1.48502 * 109.46869 * 209.99520 * 20 18 16 23 23 H 1.48502 * 109.47131 * 329.99510 * 20 18 16 24 24 C 1.46898 * 111.27018 * 296.89277 * 14 13 12 25 25 C 1.47078 * 120.88481 * 354.42727 * 11 9 8 26 26 C 1.40226 * 107.85314 * 0.23521 * 7 6 5 27 27 N 1.30842 * 108.34183 * 359.59416 * 26 7 6 28 28 H 1.09004 * 109.47120 * 300.00356 * 1 2 3 29 29 H 1.09001 * 109.47135 * 59.99981 * 1 2 3 30 30 H 1.08999 * 109.47452 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.47120 * 239.99644 * 2 1 3 32 32 H 1.08993 * 109.47029 * 299.99727 * 3 2 1 33 33 H 1.08992 * 109.46733 * 60.00035 * 3 2 1 34 34 H 1.09000 * 109.47007 * 180.02562 * 3 2 1 35 35 H 1.09005 * 109.46710 * 54.99633 * 4 2 1 36 36 H 1.09003 * 109.46930 * 295.00328 * 4 2 1 37 37 H 1.07996 * 126.21634 * 359.97438 * 6 5 4 38 38 H 0.97005 * 119.99846 * 359.97438 * 8 7 6 39 39 H 1.08998 * 109.62769 * 9.08763 * 12 11 9 40 40 H 1.08994 * 109.63274 * 248.50661 * 12 11 9 41 41 H 1.09007 * 109.49317 * 173.79322 * 13 12 11 42 42 H 1.09004 * 109.49650 * 293.87003 * 13 12 11 43 43 H 1.08996 * 109.47099 * 193.95720 * 15 14 13 44 44 H 1.08999 * 109.47144 * 313.96107 * 15 14 13 45 45 H 0.97001 * 120.00304 * 180.02562 * 19 18 16 46 46 H 1.08995 * 109.49493 * 303.14425 * 24 14 13 47 47 H 1.08999 * 109.49282 * 183.06084 * 24 14 13 48 48 H 1.08998 * 109.62441 * 350.91591 * 25 11 9 49 49 H 1.08997 * 109.63119 * 111.49747 * 25 11 9 50 50 H 1.08001 * 125.83109 * 179.76378 * 26 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2493 5 7 3.4999 -0.8264 1.1906 6 6 4.3716 -0.3937 2.1385 7 6 5.6251 -0.6778 1.7024 8 7 6.8245 -0.3952 2.3847 9 6 8.0079 -0.7333 1.8356 10 8 8.0379 -1.3722 0.8014 11 7 9.1581 -0.3635 2.4328 12 6 10.4573 -0.8233 1.9190 13 6 11.3679 0.3958 1.7373 14 7 11.4295 1.1491 2.9968 15 6 12.4247 2.2268 2.9177 16 6 11.8889 3.3430 2.0587 17 1 10.8789 3.2955 1.6794 18 6 12.6884 4.4251 1.7569 19 7 13.9182 4.4834 2.2191 20 14 12.0240 5.8093 0.6928 21 1 11.3873 6.8358 1.5564 22 1 13.1391 6.4263 -0.0696 23 1 11.0177 5.2660 -0.2545 24 6 10.1097 1.6774 3.3668 25 6 9.1475 0.5110 3.6154 26 6 5.5142 -1.2973 0.4493 27 7 4.2446 -1.3907 0.1470 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 1.8933 -0.5139 -0.8900 32 1 1.6767 1.9563 -0.8900 33 1 1.6767 1.9563 0.8899 34 1 3.1300 1.4425 -0.0005 35 1 1.6053 -1.7198 1.2952 36 1 1.7515 -0.1583 2.1370 37 1 4.1139 0.0894 3.0694 38 1 6.7987 0.0429 3.2498 39 1 10.3162 -1.3211 0.9597 40 1 10.9086 -1.5147 2.6306 41 1 12.3692 0.0641 1.4624 42 1 10.9673 1.0349 0.9504 43 1 12.6305 2.6054 3.9188 44 1 13.3446 1.8403 2.4790 45 1 14.4805 5.2448 2.0071 46 1 9.7266 2.2987 2.5573 47 1 10.1985 2.2752 4.2739 48 1 8.1405 0.8952 3.7776 49 1 9.4730 -0.0521 4.4901 50 1 6.3363 -1.6414 -0.1608 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602875407.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:57:06 Heat of formation + Delta-G solvation = 64.887487 kcal Electronic energy + Delta-G solvation = -29133.502877 eV Core-core repulsion = 25197.988721 eV Total energy + Delta-G solvation = -3935.514156 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 1.86 seconds Orbital eigenvalues (eV) -41.42934 -40.04528 -37.74618 -36.74809 -34.68168 -34.39420 -32.35750 -31.82372 -30.72656 -29.33902 -27.99219 -27.56720 -26.21055 -25.25118 -23.27278 -22.70390 -21.93765 -21.27731 -20.82797 -19.94420 -18.96033 -17.96095 -17.41160 -16.37188 -16.20952 -15.85423 -15.41441 -15.12005 -14.82730 -14.64741 -14.53983 -14.39870 -13.96938 -13.89139 -13.67223 -13.44294 -13.21528 -12.88843 -12.81348 -12.70659 -12.41665 -12.20283 -11.87604 -11.65811 -11.43220 -11.25655 -11.19038 -11.14971 -11.01435 -10.74768 -10.70853 -10.67736 -10.57582 -10.30568 -9.94746 -9.83498 -9.60522 -9.40964 -8.52876 -8.46856 -7.64928 -7.27056 -6.08703 -4.18065 1.73505 2.23897 2.70253 2.78737 3.23643 3.31279 3.34737 3.49084 3.93058 4.15207 4.36223 4.40089 4.55132 4.72078 4.77911 4.84970 4.98697 5.11512 5.19722 5.21313 5.23320 5.27022 5.39835 5.43323 5.46281 5.47425 5.58605 5.62123 5.67864 5.71818 5.86779 5.88299 5.93769 5.96819 6.10117 6.22837 6.38982 6.57850 6.67418 6.70954 6.81713 6.95828 7.03739 7.17848 7.46404 7.65728 7.83037 7.91247 7.99656 8.13992 8.24160 8.64476 8.91824 9.49640 10.96539 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.013695 B = 0.002485 C = 0.002221 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2044.053588 B =11263.396004 C =12604.901750 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.111 4.111 3 C -0.147 4.147 4 C 0.147 3.853 5 N -0.372 5.372 6 C 0.004 3.996 7 C 0.031 3.969 8 N -0.663 5.663 9 C 0.711 3.289 10 O -0.585 6.585 11 N -0.619 5.619 12 C 0.134 3.866 13 C 0.048 3.952 14 N -0.539 5.539 15 C 0.187 3.813 16 C -0.553 4.553 17 H 0.058 0.942 18 C 0.066 3.934 19 N -0.889 5.889 20 Si 0.888 3.112 21 H -0.280 1.280 22 H -0.285 1.285 23 H -0.275 1.275 24 C 0.050 3.950 25 C 0.112 3.888 26 C 0.052 3.948 27 N -0.285 5.285 28 H 0.057 0.943 29 H 0.061 0.939 30 H 0.058 0.942 31 H 0.086 0.914 32 H 0.057 0.943 33 H 0.054 0.946 34 H 0.057 0.943 35 H 0.082 0.918 36 H 0.093 0.907 37 H 0.172 0.828 38 H 0.405 0.595 39 H 0.090 0.910 40 H 0.068 0.932 41 H 0.079 0.921 42 H 0.041 0.959 43 H 0.031 0.969 44 H 0.034 0.966 45 H 0.263 0.737 46 H 0.046 0.954 47 H 0.080 0.920 48 H 0.068 0.932 49 H 0.073 0.927 50 H 0.206 0.794 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.485 -9.663 2.669 25.535 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.130 4.130 3 C -0.204 4.204 4 C 0.025 3.975 5 N -0.158 5.158 6 C -0.143 4.143 7 C -0.074 4.074 8 N -0.312 5.312 9 C 0.414 3.586 10 O -0.464 6.464 11 N -0.356 5.356 12 C 0.011 3.989 13 C -0.082 4.082 14 N -0.264 5.264 15 C 0.062 3.938 16 C -0.592 4.592 17 H 0.076 0.924 18 C -0.137 4.137 19 N -0.528 5.528 20 Si 0.716 3.284 21 H -0.206 1.206 22 H -0.211 1.211 23 H -0.200 1.200 24 C -0.079 4.079 25 C -0.011 4.011 26 C -0.135 4.135 27 N -0.107 5.107 28 H 0.076 0.924 29 H 0.080 0.920 30 H 0.077 0.923 31 H 0.105 0.895 32 H 0.076 0.924 33 H 0.073 0.927 34 H 0.076 0.924 35 H 0.100 0.900 36 H 0.111 0.889 37 H 0.190 0.810 38 H 0.242 0.758 39 H 0.108 0.892 40 H 0.086 0.914 41 H 0.097 0.903 42 H 0.059 0.941 43 H 0.049 0.951 44 H 0.053 0.947 45 H 0.072 0.928 46 H 0.065 0.935 47 H 0.098 0.902 48 H 0.086 0.914 49 H 0.091 0.909 50 H 0.222 0.778 Dipole moment (debyes) X Y Z Total from point charges -24.047 -10.704 1.464 26.362 hybrid contribution 0.136 2.218 0.012 2.222 sum -23.911 -8.486 1.476 25.415 Atomic orbital electron populations 1.21787 0.94037 1.02113 1.02381 1.21445 0.95994 0.97056 0.98476 1.21814 1.01654 0.95131 1.01804 1.21743 0.74356 1.01738 0.99649 1.48286 1.05858 1.47098 1.14525 1.21737 0.88587 1.06680 0.97303 1.17505 0.84920 1.09165 0.95827 1.42042 1.02540 1.63785 1.22839 1.15664 0.79986 0.79889 0.83107 1.90765 1.85676 1.45642 1.24274 1.47337 1.04953 1.51645 1.31628 1.21746 0.80508 0.96713 0.99932 1.22301 0.98971 0.94218 0.92697 1.62490 1.06537 1.27393 1.29951 1.19775 0.90262 0.86846 0.96955 1.21766 0.99574 1.05336 1.32503 0.92392 1.24959 0.94724 0.98245 0.95773 1.69934 1.07219 1.30656 1.44956 0.86654 0.78681 0.82408 0.80652 1.20604 1.21078 1.19987 1.22236 0.90162 0.94081 1.01448 1.21921 0.99282 0.92224 0.87706 1.24517 0.94381 0.99254 0.95352 1.77336 1.03687 1.19430 1.10218 0.92433 0.91951 0.92324 0.89532 0.92384 0.92737 0.92437 0.90007 0.88897 0.81041 0.75837 0.89194 0.91398 0.90291 0.94061 0.95123 0.94741 0.92751 0.93549 0.90211 0.91356 0.90897 0.77774 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.72 9.19 37.15 0.34 -0.37 16 2 C -0.11 -0.78 3.00 -90.62 -0.27 -1.05 16 3 C -0.15 -1.15 9.08 37.16 0.34 -0.81 16 4 C 0.15 1.02 5.91 -4.04 -0.02 0.99 16 5 N -0.37 -3.92 3.16 -61.02 -0.19 -4.11 16 6 C 0.00 0.04 11.52 -16.67 -0.19 -0.15 16 7 C 0.03 0.41 6.90 -83.86 -0.58 -0.17 16 8 N -0.66 -8.37 5.33 -14.40 -0.08 -8.45 16 9 C 0.71 11.22 8.27 -86.93 -0.72 10.50 16 10 O -0.59 -10.79 12.98 5.28 0.07 -10.72 16 11 N -0.62 -9.40 3.01 -178.19 -0.54 -9.93 16 12 C 0.13 2.11 6.61 -3.60 -0.02 2.09 16 13 C 0.05 0.89 5.36 -3.70 -0.02 0.87 16 14 N -0.54 -10.76 4.83 -235.77 -1.14 -11.90 16 15 C 0.19 4.59 5.20 -4.97 -0.03 4.56 16 16 C -0.55 -14.71 7.92 -34.44 -0.27 -14.99 16 17 H 0.06 1.55 5.87 -52.49 -0.31 1.24 16 18 C 0.07 1.82 5.46 -17.82 -0.10 1.72 16 19 N -0.89 -25.60 13.29 55.43 0.74 -24.86 16 20 Si 0.89 21.22 29.54 -169.99 -5.02 16.20 16 21 H -0.28 -6.59 7.11 56.52 0.40 -6.18 16 22 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 23 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 24 C 0.05 0.88 4.98 -3.70 -0.02 0.86 16 25 C 0.11 1.50 6.48 -3.60 -0.02 1.47 16 26 C 0.05 0.77 10.84 -17.23 -0.19 0.59 16 27 N -0.28 -3.91 12.33 30.70 0.38 -3.54 16 28 H 0.06 0.23 8.14 -51.93 -0.42 -0.19 16 29 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 30 H 0.06 0.26 8.14 -51.93 -0.42 -0.17 16 31 H 0.09 0.79 8.05 -51.93 -0.42 0.37 16 32 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 33 H 0.05 0.36 8.14 -51.93 -0.42 -0.07 16 34 H 0.06 0.60 7.75 -51.93 -0.40 0.19 16 35 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 36 H 0.09 0.42 8.07 -51.93 -0.42 0.00 16 37 H 0.17 1.08 8.06 -52.49 -0.42 0.66 16 38 H 0.40 3.91 6.50 -40.82 -0.27 3.65 16 39 H 0.09 1.44 7.04 -51.93 -0.37 1.08 16 40 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 41 H 0.08 1.44 7.95 -51.93 -0.41 1.03 16 42 H 0.04 0.88 7.73 -51.93 -0.40 0.47 16 43 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 44 H 0.03 0.91 7.89 -51.93 -0.41 0.50 16 45 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 46 H 0.05 0.93 6.22 -51.93 -0.32 0.61 16 47 H 0.08 1.38 8.11 -51.93 -0.42 0.96 16 48 H 0.07 0.71 5.87 -51.93 -0.30 0.40 16 49 H 0.07 0.90 8.14 -51.93 -0.42 0.47 16 50 H 0.21 3.32 5.94 -52.49 -0.31 3.00 16 LS Contribution 395.14 15.07 5.95 5.95 Total: -1.00 -32.26 395.14 -9.73 -41.99 By element: Atomic # 1 Polarization: 11.38 SS G_CDS: -8.13 Total: 3.26 kcal Atomic # 6 Polarization: 7.88 SS G_CDS: -1.77 Total: 6.11 kcal Atomic # 7 Polarization: -61.96 SS G_CDS: -0.83 Total: -62.79 kcal Atomic # 8 Polarization: -10.79 SS G_CDS: 0.07 Total: -10.72 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.02 Total: 16.20 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -32.26 -9.73 -41.99 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602875407.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.879 kcal (2) G-P(sol) polarization free energy of solvation -32.264 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.615 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.727 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.991 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.887 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.86 seconds