Wall clock time and date at job start Tue Mar 31 2020 20:32:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53012 * 1 3 3 C 1.53000 * 109.46824 * 2 1 4 4 C 1.52992 * 109.47048 * 240.00325 * 2 1 3 5 5 C 1.52997 * 109.46980 * 120.00256 * 2 1 3 6 6 N 1.46494 * 109.47223 * 65.00906 * 5 2 1 7 7 C 1.45762 * 117.94503 * 90.69459 * 6 5 2 8 8 C 1.52919 * 110.48379 * 199.35976 * 7 6 5 9 9 C 1.53339 * 108.67374 * 309.23899 * 8 7 6 10 10 C 1.53069 * 108.42549 * 67.54050 * 9 8 7 11 11 H 1.08992 * 109.33337 * 71.17827 * 10 9 8 12 12 N 1.46499 * 109.40143 * 190.97268 * 10 9 8 13 13 C 1.35310 * 125.87267 * 85.42092 * 12 10 9 14 14 C 1.35351 * 106.18007 * 179.97438 * 13 12 10 15 15 C 1.50693 * 126.75437 * 180.02562 * 14 13 12 16 16 N 1.46495 * 109.47269 * 95.00180 * 15 14 13 17 17 C 1.36944 * 120.00171 * 179.97438 * 16 15 14 18 18 H 1.08004 * 119.99482 * 359.97438 * 17 16 15 19 19 C 1.38809 * 119.99829 * 179.97438 * 17 16 15 20 20 N 1.31614 * 120.00655 * 0.02562 * 19 17 16 21 21 Si 1.86802 * 119.99536 * 180.02562 * 19 17 16 22 22 H 1.48496 * 109.47127 * 60.00263 * 21 19 17 23 23 H 1.48503 * 109.46872 * 180.02562 * 21 19 17 24 24 H 1.48499 * 109.47358 * 300.00010 * 21 19 17 25 25 N 1.33777 * 106.49266 * 0.02562 * 14 13 12 26 26 N 1.28634 * 108.88647 * 359.73715 * 25 14 13 27 27 C 1.33347 * 117.95003 * 270.95559 * 6 5 2 28 28 O 1.21278 * 118.24537 * 357.46799 * 27 6 5 29 29 H 1.08997 * 109.46894 * 293.96464 * 1 2 3 30 30 H 1.08994 * 109.46929 * 53.96369 * 1 2 3 31 31 H 1.09002 * 109.46507 * 173.96462 * 1 2 3 32 32 H 1.08998 * 109.47046 * 179.97438 * 3 2 1 33 33 H 1.08995 * 109.47389 * 300.00581 * 3 2 1 34 34 H 1.09006 * 109.47214 * 60.00290 * 3 2 1 35 35 H 1.09004 * 109.47495 * 299.99812 * 4 2 1 36 36 H 1.09006 * 109.47504 * 59.99775 * 4 2 1 37 37 H 1.09002 * 109.47353 * 179.97438 * 4 2 1 38 38 H 1.09006 * 109.47415 * 305.00904 * 5 2 1 39 39 H 1.08999 * 109.47046 * 185.01089 * 5 2 1 40 40 H 1.09006 * 109.29675 * 319.66833 * 7 6 5 41 41 H 1.09002 * 109.30183 * 79.04559 * 7 6 5 42 42 H 1.09002 * 109.60056 * 189.48600 * 8 7 6 43 43 H 1.08999 * 109.74340 * 69.08306 * 8 7 6 44 44 H 1.08998 * 109.67995 * 307.79959 * 9 8 7 45 45 H 1.09006 * 109.67343 * 187.26599 * 9 8 7 46 46 H 1.08008 * 126.91063 * 0.02657 * 13 12 10 47 47 H 1.09010 * 109.47017 * 215.00072 * 15 14 13 48 48 H 1.08996 * 109.47178 * 334.99888 * 15 14 13 49 49 H 0.97003 * 120.00153 * 359.97438 * 16 15 14 50 50 H 0.96998 * 120.00168 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7211 -1.2492 5 6 2.0401 -0.7213 1.2492 6 7 1.6527 -2.1329 1.1904 7 6 2.5793 -3.0701 0.5678 8 6 1.8519 -4.3529 0.1634 9 6 1.0575 -4.8680 1.3696 10 6 -0.0724 -3.8780 1.6633 11 1 -0.8273 -3.9494 0.8804 12 7 -0.6798 -4.2024 2.9563 13 6 -0.2422 -3.7821 4.1657 14 6 -1.0897 -4.3117 5.0785 15 6 -1.0287 -4.1365 6.5739 16 7 -1.9082 -3.0349 6.9729 17 6 -2.0170 -2.6894 8.2935 18 1 -1.4547 -3.2294 9.0410 19 6 -2.8499 -1.6453 8.6714 20 7 -3.5355 -0.9875 7.7606 21 14 -2.9977 -1.1736 10.4728 22 1 -1.6645 -0.7746 10.9910 23 1 -3.9434 -0.0370 10.6109 24 1 -3.5032 -2.3345 11.2487 25 7 -1.9923 -5.0213 4.3918 26 7 -1.7248 -4.9321 3.1368 27 6 0.4722 -2.4790 1.7049 28 8 -0.1973 -1.6180 2.2353 29 1 -0.3633 0.4174 0.9391 30 1 -0.3633 0.6045 -0.8310 31 1 -0.3632 -1.0220 -0.1081 32 1 3.1300 1.4426 0.0005 33 1 1.6766 1.9564 -0.8899 34 1 1.6767 1.9564 0.8900 35 1 1.6768 -1.7489 -1.2493 36 1 1.6767 -0.2073 -2.1393 37 1 3.1301 -0.7208 -1.2495 38 1 1.6053 -0.2619 2.1370 39 1 3.1264 -0.6442 1.2952 40 1 3.0169 -2.6094 -0.3179 41 1 3.3738 -3.3135 1.2733 42 1 2.5792 -5.1046 -0.1434 43 1 1.1705 -4.1453 -0.6617 44 1 1.7140 -4.9433 2.2364 45 1 0.6370 -5.8473 1.1410 46 1 0.6113 -3.1502 4.3630 47 1 -1.3541 -5.0558 7.0610 48 1 -0.0049 -3.9102 6.8718 49 1 -2.4135 -2.5502 6.3015 50 1 -4.1178 -0.2582 8.0247 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000603239559.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:32:17 Heat of formation + Delta-G solvation = 54.500395 kcal Electronic energy + Delta-G solvation = -30306.242765 eV Core-core repulsion = 26370.278191 eV Total energy + Delta-G solvation = -3935.964574 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -44.43330 -42.03150 -38.51169 -37.73587 -36.84676 -35.63090 -33.82778 -33.12147 -31.68718 -30.38359 -28.26936 -28.24847 -27.77753 -27.59072 -25.81446 -24.83043 -23.50487 -23.06344 -22.23422 -20.30213 -19.55347 -19.42181 -18.78639 -17.92996 -17.59361 -17.12741 -16.64843 -16.50371 -16.09237 -15.58206 -15.49634 -15.45996 -15.22697 -15.03258 -14.72723 -14.53107 -14.39202 -14.30352 -13.84192 -13.39680 -13.25076 -13.16704 -13.04781 -12.84661 -12.73339 -12.64476 -12.54835 -12.48061 -12.36071 -12.20831 -12.15239 -11.98219 -11.89620 -11.85140 -11.69626 -11.60442 -11.20644 -10.97057 -10.78181 -10.27951 -9.72732 -9.05349 -7.93744 -5.26091 0.45492 0.85693 1.37985 1.47990 1.52844 1.56091 1.58897 1.81152 2.58410 2.99780 3.31894 3.35982 3.41240 3.53465 3.77185 3.80661 3.81670 3.85316 3.96794 3.99382 4.10557 4.18366 4.32373 4.41595 4.45362 4.54027 4.58300 4.62945 4.72717 4.73973 4.77983 4.84840 4.87827 4.90714 4.99027 5.02394 5.04112 5.05745 5.09961 5.14596 5.20500 5.27196 5.35993 5.45845 5.47725 5.48215 5.52294 6.23492 6.24051 6.90837 7.30008 7.40295 8.00727 8.27866 9.30205 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.012921 B = 0.003084 C = 0.002650 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2166.516576 B = 9076.782010 C =10561.927483 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.080 4.080 3 C -0.138 4.138 4 C -0.139 4.139 5 C 0.114 3.886 6 N -0.577 5.577 7 C 0.089 3.911 8 C -0.122 4.122 9 C -0.126 4.126 10 C 0.128 3.872 11 H 0.144 0.856 12 N -0.271 5.271 13 C -0.008 4.008 14 C -0.032 4.032 15 C 0.237 3.763 16 N -0.741 5.741 17 C -0.248 4.248 18 H 0.088 0.912 19 C -0.081 4.081 20 N -0.975 5.975 21 Si 0.985 3.015 22 H -0.271 1.271 23 H -0.297 1.297 24 H -0.275 1.275 25 N -0.289 5.289 26 N -0.101 5.101 27 C 0.503 3.497 28 O -0.566 6.566 29 H 0.029 0.971 30 H 0.054 0.946 31 H 0.035 0.965 32 H 0.077 0.923 33 H 0.061 0.939 34 H 0.041 0.959 35 H 0.062 0.938 36 H 0.055 0.945 37 H 0.080 0.920 38 H 0.056 0.944 39 H 0.114 0.886 40 H 0.116 0.884 41 H 0.089 0.911 42 H 0.131 0.869 43 H 0.086 0.914 44 H 0.083 0.917 45 H 0.099 0.901 46 H 0.198 0.802 47 H 0.037 0.963 48 H 0.059 0.941 49 H 0.368 0.632 50 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.400 -3.832 -26.129 35.284 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.081 4.081 3 C -0.196 4.196 4 C -0.196 4.196 5 C -0.009 4.009 6 N -0.308 5.308 7 C -0.031 4.031 8 C -0.160 4.160 9 C -0.164 4.164 10 C 0.024 3.976 11 H 0.161 0.839 12 N -0.065 5.065 13 C -0.160 4.160 14 C -0.170 4.170 15 C 0.109 3.891 16 N -0.384 5.384 17 C -0.379 4.379 18 H 0.105 0.895 19 C -0.272 4.272 20 N -0.626 5.626 21 Si 0.812 3.188 22 H -0.196 1.196 23 H -0.224 1.224 24 H -0.201 1.201 25 N -0.156 5.156 26 N -0.080 5.080 27 C 0.288 3.712 28 O -0.444 6.444 29 H 0.048 0.952 30 H 0.073 0.927 31 H 0.054 0.946 32 H 0.096 0.904 33 H 0.081 0.919 34 H 0.060 0.940 35 H 0.081 0.919 36 H 0.074 0.926 37 H 0.098 0.902 38 H 0.074 0.926 39 H 0.132 0.868 40 H 0.134 0.866 41 H 0.107 0.893 42 H 0.150 0.850 43 H 0.105 0.895 44 H 0.102 0.898 45 H 0.117 0.883 46 H 0.215 0.785 47 H 0.054 0.946 48 H 0.077 0.923 49 H 0.199 0.801 50 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 22.026 -4.296 -26.387 34.639 hybrid contribution -0.500 1.459 1.320 2.030 sum 21.526 -2.837 -25.067 33.163 Atomic orbital electron populations 1.21816 0.96214 1.00319 1.00380 1.20930 0.94502 0.96587 0.96095 1.21801 1.02014 0.94046 1.01708 1.21994 1.01949 1.00240 0.95444 1.21794 1.01385 0.79647 0.98033 1.47286 1.16463 1.10088 1.56916 1.22144 0.91605 0.89303 1.00090 1.21933 1.00623 0.97376 0.96065 1.22193 0.94640 0.98104 1.01490 1.21879 0.99119 0.94590 0.82021 0.83865 1.47142 1.19013 1.32620 1.07681 1.23312 1.04554 1.04151 0.84001 1.22227 0.95058 1.01196 0.98551 1.18968 0.94877 0.91102 0.84124 1.42543 1.52655 1.37658 1.05499 1.19708 1.20975 1.12012 0.85180 0.89465 1.25750 0.99818 0.99219 1.02442 1.69893 1.33100 1.25281 1.34305 0.85051 0.77582 0.77145 0.78979 1.19613 1.22369 1.20111 1.74990 1.22677 1.20625 0.97316 1.78126 1.02699 1.14245 1.12898 1.19717 0.82559 0.89338 0.79594 1.90898 1.57748 1.50690 1.45089 0.95186 0.92711 0.94617 0.90389 0.91949 0.94023 0.91887 0.92600 0.90162 0.92578 0.86773 0.86603 0.89317 0.85050 0.89539 0.89840 0.88273 0.78545 0.94560 0.92334 0.80131 0.94099 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.79 7.04 71.99 0.51 -2.28 16 2 C -0.08 -1.09 0.85 -52.18 -0.04 -1.14 16 3 C -0.14 -1.68 8.47 71.98 0.61 -1.07 16 4 C -0.14 -1.03 7.04 71.98 0.51 -0.53 16 5 C 0.11 1.67 4.53 86.38 0.39 2.06 16 6 N -0.58 -7.97 2.35 -826.63 -1.95 -9.92 16 7 C 0.09 0.36 5.39 86.49 0.47 0.83 16 8 C -0.12 -0.33 6.02 30.68 0.18 -0.14 16 9 C -0.13 -1.35 5.63 30.73 0.17 -1.18 16 10 C 0.13 2.70 3.32 44.11 0.15 2.85 16 11 H 0.14 2.80 8.14 -2.39 -0.02 2.78 16 12 N -0.27 -8.67 3.11 -331.41 -1.03 -9.70 16 13 C -0.01 -0.30 10.11 83.49 0.84 0.55 16 14 C -0.03 -1.39 6.62 41.59 0.28 -1.11 16 15 C 0.24 10.94 6.82 85.63 0.58 11.52 16 16 N -0.74 -42.71 5.59 -347.19 -1.94 -44.65 16 17 C -0.25 -14.83 9.99 84.03 0.84 -13.99 16 18 H 0.09 4.84 7.83 -2.91 -0.02 4.81 16 19 C -0.08 -4.96 5.50 84.86 0.47 -4.49 16 20 N -0.98 -65.06 13.06 21.65 0.28 -64.78 16 21 Si 0.98 48.59 29.55 68.60 2.03 50.62 16 22 H -0.27 -12.55 7.11 99.48 0.71 -11.84 16 23 H -0.30 -14.81 7.11 99.48 0.71 -14.10 16 24 H -0.28 -13.00 7.11 99.48 0.71 -12.29 16 25 N -0.29 -13.07 12.41 -48.60 -0.60 -13.67 16 26 N -0.10 -3.94 13.17 37.02 0.49 -3.45 16 27 C 0.50 11.54 4.97 87.72 0.44 11.98 16 28 O -0.57 -19.68 13.11 -3.02 -0.04 -19.72 16 29 H 0.03 0.85 7.48 -2.39 -0.02 0.84 16 30 H 0.05 1.05 8.14 -2.39 -0.02 1.03 16 31 H 0.03 0.82 6.54 -2.39 -0.02 0.81 16 32 H 0.08 0.61 8.14 -2.39 -0.02 0.59 16 33 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 34 H 0.04 0.66 8.14 -2.38 -0.02 0.64 16 35 H 0.06 0.42 6.03 -2.38 -0.01 0.41 16 36 H 0.05 0.46 8.14 -2.38 -0.02 0.44 16 37 H 0.08 0.24 7.81 -2.39 -0.02 0.22 16 38 H 0.06 1.29 7.16 -2.38 -0.02 1.27 16 39 H 0.11 0.91 8.01 -2.39 -0.02 0.90 16 40 H 0.12 -0.04 5.49 -2.38 -0.01 -0.05 16 41 H 0.09 0.17 8.14 -2.39 -0.02 0.15 16 42 H 0.13 -0.37 8.14 -2.39 -0.02 -0.39 16 43 H 0.09 0.19 8.12 -2.39 -0.02 0.17 16 44 H 0.08 0.96 8.13 -2.39 -0.02 0.94 16 45 H 0.10 0.99 8.14 -2.38 -0.02 0.97 16 46 H 0.20 6.18 7.91 -2.91 -0.02 6.16 16 47 H 0.04 1.68 8.14 -2.38 -0.02 1.67 16 48 H 0.06 2.42 8.14 -2.39 -0.02 2.40 16 49 H 0.37 23.56 7.66 -92.71 -0.71 22.85 16 50 H 0.25 16.12 8.31 -92.71 -0.77 15.34 16 Total: -1.00 -87.86 392.02 3.85 -84.01 By element: Atomic # 1 Polarization: 27.18 SS G_CDS: 0.23 Total: 27.41 kcal Atomic # 6 Polarization: -2.54 SS G_CDS: 6.39 Total: 3.85 kcal Atomic # 7 Polarization: -141.42 SS G_CDS: -4.75 Total: -146.17 kcal Atomic # 8 Polarization: -19.68 SS G_CDS: -0.04 Total: -19.72 kcal Atomic # 14 Polarization: 48.59 SS G_CDS: 2.03 Total: 50.62 kcal Total: -87.86 3.85 -84.01 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000603239559.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.514 kcal (2) G-P(sol) polarization free energy of solvation -87.860 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.654 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.847 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.013 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.500 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds