Wall clock time and date at job start Tue Mar 31 2020 20:22:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.34948 * 126.03921 * 2 1 4 4 C 1.35316 * 107.74666 * 179.97438 * 3 2 1 5 5 C 1.50704 * 126.03742 * 180.02562 * 4 3 2 6 6 C 1.52995 * 109.47141 * 300.00048 * 5 4 3 7 7 C 1.52998 * 109.46874 * 60.00766 * 5 4 3 8 8 N 1.46500 * 109.46636 * 180.02562 * 5 4 3 9 9 C 1.34784 * 119.99670 * 180.02562 * 8 5 4 10 10 O 1.21584 * 120.00158 * 0.02562 * 9 8 5 11 11 N 1.34780 * 119.99666 * 179.97438 * 9 8 5 12 12 C 1.46500 * 119.99594 * 180.02562 * 11 9 8 13 13 C 1.53042 * 109.45982 * 275.03073 * 12 11 9 14 14 C 1.53189 * 109.31288 * 178.60332 * 13 12 11 15 15 N 1.46924 * 108.76806 * 54.65314 * 14 13 12 16 16 C 1.36935 * 120.63125 * 126.40506 * 15 14 13 17 17 H 1.07996 * 120.00165 * 331.82998 * 16 15 14 18 18 C 1.38816 * 119.99804 * 151.82828 * 16 15 14 19 19 N 1.31616 * 120.00060 * 343.07387 * 18 16 15 20 20 Si 1.86809 * 119.99837 * 163.06910 * 18 16 15 21 21 H 1.48496 * 109.46917 * 0.02562 * 20 18 16 22 22 H 1.48494 * 109.46850 * 120.00054 * 20 18 16 23 23 H 1.48500 * 109.47092 * 240.00411 * 20 18 16 24 24 C 1.46926 * 118.73973 * 306.38584 * 15 14 13 25 25 C 1.53039 * 109.46180 * 154.97611 * 12 11 9 26 26 C 1.39872 * 107.92056 * 0.02562 * 4 3 2 27 27 N 1.30838 * 108.20324 * 0.26360 * 26 4 3 28 28 H 1.09000 * 109.46781 * 89.99556 * 1 2 3 29 29 H 1.08997 * 109.47103 * 209.99514 * 1 2 3 30 30 H 1.08996 * 109.46948 * 330.00071 * 1 2 3 31 31 H 1.08003 * 126.12703 * 359.96363 * 3 2 1 32 32 H 1.09003 * 109.47120 * 60.00529 * 6 5 4 33 33 H 1.09000 * 109.46878 * 180.02562 * 6 5 4 34 34 H 1.08999 * 109.47408 * 300.00188 * 6 5 4 35 35 H 1.08991 * 109.47633 * 59.99763 * 7 5 4 36 36 H 1.09000 * 109.46996 * 179.97438 * 7 5 4 37 37 H 1.09003 * 109.47092 * 299.99290 * 7 5 4 38 38 H 0.96998 * 120.00536 * 0.02562 * 8 5 4 39 39 H 0.96991 * 120.00139 * 0.02562 * 11 9 8 40 40 H 1.08998 * 109.46241 * 34.99999 * 12 11 9 41 41 H 1.09005 * 109.49515 * 298.56485 * 13 12 11 42 42 H 1.09001 * 109.49854 * 58.66368 * 13 12 11 43 43 H 1.09001 * 109.59938 * 294.86685 * 14 13 12 44 44 H 1.09003 * 109.70517 * 174.50309 * 14 13 12 45 45 H 0.97002 * 119.99461 * 180.02562 * 19 18 16 46 46 H 1.09002 * 109.58789 * 293.82107 * 24 15 14 47 47 H 1.08992 * 109.70755 * 173.46182 * 24 15 14 48 48 H 1.08999 * 109.49828 * 301.33795 * 25 12 11 49 49 H 1.09000 * 109.49768 * 61.42846 * 25 12 11 50 50 H 1.08001 * 125.89822 * 180.02562 * 26 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2590 1.0912 0.0000 4 6 3.5438 0.6665 0.0006 5 6 4.7681 1.5453 0.0013 6 6 4.7624 2.4288 -1.2477 7 6 4.7612 2.4282 1.2508 8 7 5.9701 0.7078 0.0012 9 6 7.1903 1.2804 0.0023 10 8 7.2933 2.4919 0.0039 11 7 8.2962 0.5100 0.0027 12 6 9.6224 1.1324 0.0045 13 6 10.0315 1.4648 -1.4323 14 6 11.4032 2.1469 -1.4236 15 7 12.3551 1.2852 -0.7093 16 6 13.5346 0.9120 -1.2964 17 1 13.6025 0.8363 -2.3715 18 6 14.6430 0.6310 -0.5094 19 7 14.6791 1.0317 0.7438 20 14 16.0835 -0.3162 -1.2290 21 1 15.7977 -0.6491 -2.6477 22 1 17.3105 0.5168 -1.1540 23 1 16.2873 -1.5686 -0.4576 24 6 12.0176 0.8319 0.6469 25 6 10.6389 0.1649 0.6150 26 6 3.5347 -0.7322 0.0003 27 7 2.2892 -1.1328 -0.0061 28 1 -0.3633 0.0001 -1.0277 29 1 -0.3633 -0.8900 0.5137 30 1 -0.3633 0.8900 0.5138 31 1 1.9282 2.1193 -0.0006 32 1 3.8680 3.0519 -1.2480 33 1 5.6482 3.0640 -1.2474 34 1 4.7673 1.7997 -2.1378 35 1 4.7652 1.7988 2.1406 36 1 5.6470 3.0635 1.2516 37 1 3.8668 3.0513 1.2505 38 1 5.8880 -0.2587 0.0003 39 1 8.2140 -0.4564 0.0018 40 1 9.5929 2.0483 0.5947 41 1 10.0855 0.5463 -2.0169 42 1 9.2947 2.1354 -1.8745 43 1 11.3298 3.1090 -0.9166 44 1 11.7448 2.2985 -2.4475 45 1 15.4539 0.8356 1.2935 46 1 11.9942 1.6868 1.3227 47 1 12.7626 0.1146 0.9907 48 1 10.3344 -0.0900 1.6301 49 1 10.6870 -0.7412 0.0109 50 1 4.4054 -1.3711 0.0011 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000610402439.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:22:15 Heat of formation + Delta-G solvation = 74.738757 kcal Electronic energy + Delta-G solvation = -29393.447672 eV Core-core repulsion = 25458.360699 eV Total energy + Delta-G solvation = -3935.086973 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -41.74036 -40.02751 -37.74744 -36.17889 -34.25788 -33.35180 -32.56008 -31.44465 -30.02221 -29.53537 -28.89855 -27.22868 -27.18040 -24.96442 -23.08394 -22.18869 -21.83173 -21.41411 -20.34095 -19.65001 -19.17002 -18.39586 -17.28459 -16.60846 -15.84099 -15.79216 -15.01542 -14.90760 -14.73407 -14.58627 -14.40306 -13.82448 -13.72058 -13.52085 -13.47549 -13.32101 -13.00306 -12.97605 -12.87535 -12.60714 -12.32042 -12.10821 -11.94685 -11.79057 -11.40549 -11.28934 -11.07951 -10.82914 -10.72776 -10.69304 -10.40611 -10.20133 -9.97779 -9.79630 -9.76959 -9.62919 -9.44854 -9.18426 -8.65644 -8.51567 -8.37963 -6.64072 -5.76250 -3.18073 1.51271 2.12133 2.42631 2.87784 3.38976 3.46974 3.48308 3.49300 4.07584 4.33159 4.48769 4.52445 4.64462 4.68864 4.83873 4.93966 4.97340 5.18504 5.32229 5.38641 5.46460 5.50849 5.56862 5.63555 5.68156 5.72560 5.86394 5.95411 5.97488 6.14934 6.18702 6.26904 6.36341 6.36654 6.44939 6.56862 6.59760 6.63701 6.68516 6.69961 6.86714 7.01849 7.06106 7.21530 7.31164 7.37294 7.66838 7.83094 8.26804 8.48307 8.88349 9.24503 9.87923 10.45135 11.32646 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.031598 B = 0.002064 C = 0.002023 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 885.916760 B =13561.738621 C =13835.461785 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.102 3.898 2 N -0.376 5.376 3 C 0.067 3.933 4 C -0.232 4.232 5 C 0.276 3.724 6 C -0.158 4.158 7 C -0.158 4.158 8 N -0.744 5.744 9 C 0.706 3.294 10 O -0.586 6.586 11 N -0.741 5.741 12 C 0.170 3.830 13 C -0.139 4.139 14 C 0.147 3.853 15 N -0.593 5.593 16 C -0.250 4.250 17 H 0.066 0.934 18 C 0.001 3.999 19 N -0.903 5.903 20 Si 0.901 3.099 21 H -0.278 1.278 22 H -0.291 1.291 23 H -0.289 1.289 24 C 0.175 3.825 25 C -0.146 4.146 26 C 0.053 3.947 27 N -0.293 5.293 28 H 0.075 0.925 29 H 0.089 0.911 30 H 0.088 0.912 31 H 0.175 0.825 32 H 0.056 0.944 33 H 0.085 0.915 34 H 0.052 0.948 35 H 0.052 0.948 36 H 0.085 0.915 37 H 0.056 0.944 38 H 0.390 0.610 39 H 0.390 0.610 40 H 0.081 0.919 41 H 0.056 0.944 42 H 0.055 0.945 43 H 0.020 0.980 44 H 0.055 0.945 45 H 0.253 0.747 46 H 0.021 0.979 47 H 0.091 0.909 48 H 0.053 0.947 49 H 0.058 0.942 50 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.796 -1.825 0.020 28.854 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.040 4.040 2 N -0.158 5.158 3 C -0.079 4.079 4 C -0.244 4.244 5 C 0.188 3.812 6 C -0.217 4.217 7 C -0.217 4.217 8 N -0.401 5.401 9 C 0.406 3.594 10 O -0.464 6.464 11 N -0.394 5.394 12 C 0.066 3.934 13 C -0.179 4.179 14 C 0.021 3.979 15 N -0.316 5.316 16 C -0.379 4.379 17 H 0.084 0.916 18 C -0.198 4.198 19 N -0.548 5.548 20 Si 0.731 3.269 21 H -0.203 1.203 22 H -0.218 1.218 23 H -0.216 1.216 24 C 0.048 3.952 25 C -0.186 4.186 26 C -0.133 4.133 27 N -0.115 5.115 28 H 0.093 0.907 29 H 0.108 0.892 30 H 0.106 0.894 31 H 0.192 0.808 32 H 0.075 0.925 33 H 0.104 0.896 34 H 0.071 0.929 35 H 0.071 0.929 36 H 0.104 0.896 37 H 0.075 0.925 38 H 0.224 0.776 39 H 0.222 0.778 40 H 0.099 0.901 41 H 0.074 0.926 42 H 0.073 0.927 43 H 0.038 0.962 44 H 0.073 0.927 45 H 0.063 0.937 46 H 0.039 0.961 47 H 0.109 0.891 48 H 0.072 0.928 49 H 0.077 0.923 50 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges -29.507 -1.713 0.125 29.557 hybrid contribution 1.086 -0.824 -0.304 1.396 sum -28.421 -2.536 -0.179 28.535 Atomic orbital electron populations 1.21871 0.74065 1.04577 1.03462 1.48472 1.06684 1.03762 1.56903 1.22133 0.90369 0.93431 1.02001 1.20056 0.94212 0.93782 1.16385 1.18122 0.79288 0.87925 0.95898 1.22263 1.03322 0.99820 0.96269 1.22264 1.03326 0.99820 0.96262 1.45272 1.04234 1.09237 1.81309 1.15940 0.80121 0.85739 0.77555 1.90845 1.85781 1.12014 1.57792 1.45571 1.05505 1.09012 1.79304 1.20874 0.78633 0.96697 0.97151 1.22384 0.98796 1.00725 0.96005 1.20879 0.88207 0.92356 0.96506 1.44101 1.18058 1.54833 1.14577 1.19235 0.87255 1.39879 0.91555 0.91637 1.25056 0.97143 1.00957 0.96626 1.70037 1.29875 1.47356 1.07518 0.86235 0.82482 0.79620 0.78518 1.20287 1.21772 1.21616 1.20734 0.90836 0.97331 0.86299 1.22540 0.98303 0.98788 0.99007 1.23595 0.95210 0.94334 1.00152 1.77382 1.01531 1.08211 1.24338 0.90684 0.89244 0.89368 0.80783 0.92486 0.89605 0.92906 0.92911 0.89621 0.92475 0.77569 0.77772 0.90072 0.92558 0.92673 0.96191 0.92692 0.93701 0.96120 0.89110 0.92817 0.92299 0.80336 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.38 11.47 59.85 0.69 1.07 16 2 N -0.38 -3.01 4.01 -68.16 -0.27 -3.28 16 3 C 0.07 0.51 10.80 -17.22 -0.19 0.32 16 4 C -0.23 -2.12 4.80 -105.05 -0.50 -2.62 16 5 C 0.28 2.84 0.96 -132.97 -0.13 2.71 16 6 C -0.16 -1.71 8.28 37.16 0.31 -1.40 16 7 C -0.16 -1.70 8.28 37.16 0.31 -1.39 16 8 N -0.74 -8.14 5.08 -53.50 -0.27 -8.41 16 9 C 0.71 10.24 7.95 -86.91 -0.69 9.55 16 10 O -0.59 -10.47 12.21 5.29 0.06 -10.41 16 11 N -0.74 -10.41 5.08 -58.63 -0.30 -10.70 16 12 C 0.17 2.98 2.42 -67.89 -0.16 2.81 16 13 C -0.14 -2.57 5.65 -26.61 -0.15 -2.72 16 14 C 0.15 3.21 6.52 -3.71 -0.02 3.18 16 15 N -0.59 -14.89 2.99 -172.32 -0.52 -15.41 16 16 C -0.25 -6.85 9.58 -15.06 -0.14 -7.00 16 17 H 0.07 1.78 7.88 -52.49 -0.41 1.36 16 18 C 0.00 0.01 4.92 -17.43 -0.09 -0.07 16 19 N -0.90 -26.18 11.19 55.49 0.62 -25.56 16 20 Si 0.90 21.66 29.59 -169.99 -5.03 16.63 16 21 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 22 H -0.29 -7.07 7.11 56.52 0.40 -6.66 16 23 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 24 C 0.17 4.12 5.30 -3.71 -0.02 4.10 16 25 C -0.15 -2.69 5.55 -26.61 -0.15 -2.84 16 26 C 0.05 0.50 11.15 -17.36 -0.19 0.31 16 27 N -0.29 -3.05 12.58 30.63 0.39 -2.67 16 28 H 0.07 0.21 8.14 -51.93 -0.42 -0.21 16 29 H 0.09 0.31 8.14 -51.93 -0.42 -0.11 16 30 H 0.09 0.12 8.14 -51.93 -0.42 -0.30 16 31 H 0.18 0.81 8.06 -52.48 -0.42 0.39 16 32 H 0.06 0.49 8.00 -51.93 -0.42 0.07 16 33 H 0.09 1.17 6.17 -51.93 -0.32 0.85 16 34 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 35 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 36 H 0.08 1.16 6.16 -51.93 -0.32 0.84 16 37 H 0.06 0.49 8.00 -51.93 -0.42 0.07 16 38 H 0.39 3.34 6.47 -40.82 -0.26 3.07 16 39 H 0.39 4.42 8.62 -40.82 -0.35 4.07 16 40 H 0.08 1.61 7.57 -51.93 -0.39 1.21 16 41 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 42 H 0.05 1.01 8.14 -51.93 -0.42 0.58 16 43 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 44 H 0.05 1.17 7.93 -51.93 -0.41 0.76 16 45 H 0.25 7.07 8.31 -40.82 -0.34 6.73 16 46 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 47 H 0.09 2.38 6.07 -51.93 -0.31 2.06 16 48 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 49 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 50 H 0.18 1.26 6.71 -52.49 -0.35 0.90 16 LS Contribution 393.19 15.07 5.93 5.93 Total: -1.00 -33.97 393.19 -8.71 -42.68 By element: Atomic # 1 Polarization: 13.37 SS G_CDS: -8.18 Total: 5.19 kcal Atomic # 6 Polarization: 7.15 SS G_CDS: -1.14 Total: 6.02 kcal Atomic # 7 Polarization: -65.68 SS G_CDS: -0.35 Total: -66.03 kcal Atomic # 8 Polarization: -10.47 SS G_CDS: 0.06 Total: -10.41 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.03 Total: 16.63 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -33.97 -8.71 -42.68 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610402439.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.419 kcal (2) G-P(sol) polarization free energy of solvation -33.970 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.449 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.710 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.680 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.739 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds