Wall clock time and date at job start Tue Mar 31 2020 20:22:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.34948 * 126.03921 * 2 1 4 4 C 1.35316 * 107.74666 * 179.97438 * 3 2 1 5 5 C 1.50704 * 126.03742 * 180.02562 * 4 3 2 6 6 C 1.52995 * 109.47141 * 300.00048 * 5 4 3 7 7 C 1.52998 * 109.46874 * 60.00766 * 5 4 3 8 8 N 1.46500 * 109.46636 * 180.02562 * 5 4 3 9 9 C 1.34784 * 119.99670 * 180.02562 * 8 5 4 10 10 O 1.21584 * 120.00158 * 0.02562 * 9 8 5 11 11 N 1.34780 * 119.99666 * 179.97438 * 9 8 5 12 12 C 1.46500 * 119.99594 * 180.02562 * 11 9 8 13 13 C 1.53042 * 109.45982 * 275.03073 * 12 11 9 14 14 C 1.53189 * 109.31288 * 178.60332 * 13 12 11 15 15 N 1.46924 * 108.76806 * 54.65314 * 14 13 12 16 16 C 1.36935 * 120.63125 * 126.40506 * 15 14 13 17 17 H 1.07996 * 120.00165 * 331.82998 * 16 15 14 18 18 C 1.38816 * 119.99804 * 151.82828 * 16 15 14 19 19 N 1.31616 * 120.00060 * 343.07387 * 18 16 15 20 20 Si 1.86809 * 119.99837 * 163.06910 * 18 16 15 21 21 H 1.48496 * 109.46917 * 0.02562 * 20 18 16 22 22 H 1.48494 * 109.46850 * 120.00054 * 20 18 16 23 23 H 1.48500 * 109.47092 * 240.00411 * 20 18 16 24 24 C 1.46926 * 118.73973 * 306.38584 * 15 14 13 25 25 C 1.53039 * 109.46180 * 154.97611 * 12 11 9 26 26 C 1.39872 * 107.92056 * 0.02562 * 4 3 2 27 27 N 1.30838 * 108.20324 * 0.26360 * 26 4 3 28 28 H 1.09000 * 109.46781 * 89.99556 * 1 2 3 29 29 H 1.08997 * 109.47103 * 209.99514 * 1 2 3 30 30 H 1.08996 * 109.46948 * 330.00071 * 1 2 3 31 31 H 1.08003 * 126.12703 * 359.96363 * 3 2 1 32 32 H 1.09003 * 109.47120 * 60.00529 * 6 5 4 33 33 H 1.09000 * 109.46878 * 180.02562 * 6 5 4 34 34 H 1.08999 * 109.47408 * 300.00188 * 6 5 4 35 35 H 1.08991 * 109.47633 * 59.99763 * 7 5 4 36 36 H 1.09000 * 109.46996 * 179.97438 * 7 5 4 37 37 H 1.09003 * 109.47092 * 299.99290 * 7 5 4 38 38 H 0.96998 * 120.00536 * 0.02562 * 8 5 4 39 39 H 0.96991 * 120.00139 * 0.02562 * 11 9 8 40 40 H 1.08998 * 109.46241 * 34.99999 * 12 11 9 41 41 H 1.09005 * 109.49515 * 298.56485 * 13 12 11 42 42 H 1.09001 * 109.49854 * 58.66368 * 13 12 11 43 43 H 1.09001 * 109.59938 * 294.86685 * 14 13 12 44 44 H 1.09003 * 109.70517 * 174.50309 * 14 13 12 45 45 H 0.97002 * 119.99461 * 180.02562 * 19 18 16 46 46 H 1.09002 * 109.58789 * 293.82107 * 24 15 14 47 47 H 1.08992 * 109.70755 * 173.46182 * 24 15 14 48 48 H 1.08999 * 109.49828 * 301.33795 * 25 12 11 49 49 H 1.09000 * 109.49768 * 61.42846 * 25 12 11 50 50 H 1.08001 * 125.89822 * 180.02562 * 26 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2590 1.0912 0.0000 4 6 3.5438 0.6665 0.0006 5 6 4.7681 1.5453 0.0013 6 6 4.7624 2.4288 -1.2477 7 6 4.7612 2.4282 1.2508 8 7 5.9701 0.7078 0.0012 9 6 7.1903 1.2804 0.0023 10 8 7.2933 2.4919 0.0039 11 7 8.2962 0.5100 0.0027 12 6 9.6224 1.1324 0.0045 13 6 10.0315 1.4648 -1.4323 14 6 11.4032 2.1469 -1.4236 15 7 12.3551 1.2852 -0.7093 16 6 13.5346 0.9120 -1.2964 17 1 13.6025 0.8363 -2.3715 18 6 14.6430 0.6310 -0.5094 19 7 14.6791 1.0317 0.7438 20 14 16.0835 -0.3162 -1.2290 21 1 15.7977 -0.6491 -2.6477 22 1 17.3105 0.5168 -1.1540 23 1 16.2873 -1.5686 -0.4576 24 6 12.0176 0.8319 0.6469 25 6 10.6389 0.1649 0.6150 26 6 3.5347 -0.7322 0.0003 27 7 2.2892 -1.1328 -0.0061 28 1 -0.3633 0.0001 -1.0277 29 1 -0.3633 -0.8900 0.5137 30 1 -0.3633 0.8900 0.5138 31 1 1.9282 2.1193 -0.0006 32 1 3.8680 3.0519 -1.2480 33 1 5.6482 3.0640 -1.2474 34 1 4.7673 1.7997 -2.1378 35 1 4.7652 1.7988 2.1406 36 1 5.6470 3.0635 1.2516 37 1 3.8668 3.0513 1.2505 38 1 5.8880 -0.2587 0.0003 39 1 8.2140 -0.4564 0.0018 40 1 9.5929 2.0483 0.5947 41 1 10.0855 0.5463 -2.0169 42 1 9.2947 2.1354 -1.8745 43 1 11.3298 3.1090 -0.9166 44 1 11.7448 2.2985 -2.4475 45 1 15.4539 0.8356 1.2935 46 1 11.9942 1.6868 1.3227 47 1 12.7626 0.1146 0.9907 48 1 10.3344 -0.0900 1.6301 49 1 10.6870 -0.7412 0.0109 50 1 4.4054 -1.3711 0.0011 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000610402439.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:22:14 Heat of formation + Delta-G solvation = 51.465498 kcal Electronic energy + Delta-G solvation = -29394.456876 eV Core-core repulsion = 25458.360699 eV Total energy + Delta-G solvation = -3936.096177 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -42.38211 -41.15010 -39.24738 -37.31164 -35.78149 -34.11553 -33.86136 -32.81166 -31.63805 -30.86888 -29.95648 -28.07758 -27.67844 -26.82707 -24.26261 -23.82363 -23.14130 -22.17330 -21.35710 -20.99743 -20.27654 -19.46050 -18.72384 -17.85596 -17.04578 -16.68552 -16.35395 -16.12818 -15.80293 -15.61046 -15.33513 -15.32325 -15.23087 -14.76594 -14.58533 -14.42044 -14.22839 -14.01211 -13.84462 -13.50687 -13.39299 -13.18637 -13.00766 -12.90488 -12.82048 -12.60980 -12.54416 -12.45371 -12.22665 -12.11572 -11.95831 -11.82637 -11.52375 -11.47189 -11.27577 -10.79392 -10.54431 -10.39048 -10.20750 -9.70980 -9.28451 -8.68288 -7.85954 -5.31381 0.94209 1.48450 1.50334 1.61150 1.63216 1.77387 1.84682 2.32715 2.53358 3.27133 3.35651 3.54736 3.69985 3.95570 3.97962 4.09650 4.13239 4.22194 4.29636 4.35248 4.40709 4.47699 4.50816 4.69665 4.71171 4.74515 4.80353 4.85311 4.86049 4.90282 4.99934 5.03951 5.06717 5.09868 5.12169 5.20841 5.34305 5.39126 5.47837 5.50727 5.57614 5.66999 5.72939 5.74257 5.78138 6.11212 6.17669 6.41231 6.70481 7.16579 7.25052 7.76518 7.86391 8.39400 9.21228 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.031598 B = 0.002064 C = 0.002023 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 885.916760 B =13561.738621 C =13835.461785 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.092 3.908 2 N -0.377 5.377 3 C 0.077 3.923 4 C -0.249 4.249 5 C 0.278 3.722 6 C -0.153 4.153 7 C -0.154 4.154 8 N -0.729 5.729 9 C 0.704 3.296 10 O -0.620 6.620 11 N -0.731 5.731 12 C 0.184 3.816 13 C -0.122 4.122 14 C 0.145 3.855 15 N -0.609 5.609 16 C -0.261 4.261 17 H 0.067 0.933 18 C -0.051 4.051 19 N -0.936 5.936 20 Si 0.968 3.032 21 H -0.267 1.267 22 H -0.294 1.294 23 H -0.288 1.288 24 C 0.179 3.821 25 C -0.128 4.128 26 C 0.045 3.955 27 N -0.330 5.330 28 H 0.086 0.914 29 H 0.089 0.911 30 H 0.116 0.884 31 H 0.206 0.794 32 H 0.080 0.920 33 H 0.054 0.946 34 H 0.048 0.952 35 H 0.049 0.951 36 H 0.053 0.947 37 H 0.081 0.919 38 H 0.403 0.597 39 H 0.407 0.593 40 H 0.057 0.943 41 H 0.063 0.937 42 H 0.059 0.941 43 H 0.007 0.993 44 H 0.056 0.944 45 H 0.250 0.750 46 H -0.006 1.006 47 H 0.062 0.938 48 H 0.075 0.925 49 H 0.069 0.931 50 H 0.192 0.808 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -31.320 -2.839 -0.671 31.456 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.048 4.048 2 N -0.159 5.159 3 C -0.071 4.071 4 C -0.261 4.261 5 C 0.191 3.809 6 C -0.212 4.212 7 C -0.212 4.212 8 N -0.386 5.386 9 C 0.404 3.596 10 O -0.501 6.501 11 N -0.385 5.385 12 C 0.079 3.921 13 C -0.162 4.162 14 C 0.019 3.981 15 N -0.332 5.332 16 C -0.391 4.391 17 H 0.085 0.915 18 C -0.246 4.246 19 N -0.582 5.582 20 Si 0.797 3.203 21 H -0.191 1.191 22 H -0.221 1.221 23 H -0.214 1.214 24 C 0.052 3.948 25 C -0.168 4.168 26 C -0.140 4.140 27 N -0.152 5.152 28 H 0.104 0.896 29 H 0.107 0.893 30 H 0.135 0.865 31 H 0.223 0.777 32 H 0.099 0.901 33 H 0.073 0.927 34 H 0.068 0.932 35 H 0.068 0.932 36 H 0.072 0.928 37 H 0.100 0.900 38 H 0.240 0.760 39 H 0.242 0.758 40 H 0.075 0.925 41 H 0.082 0.918 42 H 0.077 0.923 43 H 0.025 0.975 44 H 0.074 0.926 45 H 0.059 0.941 46 H 0.012 0.988 47 H 0.081 0.919 48 H 0.093 0.907 49 H 0.087 0.913 50 H 0.209 0.791 Dipole moment (debyes) X Y Z Total from point charges -32.104 -2.781 -0.580 32.230 hybrid contribution 1.758 -0.418 -0.089 1.809 sum -30.346 -3.198 -0.669 30.521 Atomic orbital electron populations 1.22216 0.71901 1.06033 1.04656 1.48810 1.07965 1.03243 1.55840 1.22615 0.89841 0.94640 0.99956 1.19916 0.94184 0.93506 1.18473 1.18116 0.79384 0.87983 0.95414 1.22197 1.02986 0.99651 0.96345 1.22199 1.02979 0.99655 0.96352 1.45152 1.03322 1.10147 1.79953 1.16046 0.80921 0.85241 0.77364 1.90844 1.86370 1.13695 1.59167 1.45179 1.04146 1.09817 1.79385 1.20426 0.80101 0.95682 0.95900 1.22170 0.96603 1.00626 0.96849 1.20967 0.89419 0.91794 0.95949 1.44351 1.18176 1.55652 1.15050 1.19548 0.88227 1.39498 0.91835 0.91537 1.25820 0.99732 1.02034 0.97049 1.70193 1.30534 1.48666 1.08779 0.85194 0.78951 0.77955 0.78250 1.19106 1.22147 1.21441 1.20558 0.93055 0.95907 0.85234 1.22252 0.95296 0.98511 1.00704 1.23872 0.95548 0.94769 0.99819 1.77330 1.02189 1.09868 1.25766 0.89595 0.89260 0.86536 0.77703 0.90080 0.92706 0.93245 0.93218 0.92760 0.90048 0.75978 0.75764 0.92520 0.91832 0.92255 0.97488 0.92565 0.94051 0.98753 0.91937 0.90659 0.91269 0.79082 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.43 11.47 127.77 1.47 1.90 16 2 N -0.38 -5.05 4.01 -369.56 -1.48 -6.53 16 3 C 0.08 0.93 10.80 83.54 0.90 1.83 16 4 C -0.25 -3.95 4.80 -20.14 -0.10 -4.05 16 5 C 0.28 5.27 0.96 2.86 0.00 5.27 16 6 C -0.15 -3.10 8.28 71.98 0.60 -2.50 16 7 C -0.15 -3.09 8.28 71.98 0.60 -2.50 16 8 N -0.73 -14.88 5.08 -441.44 -2.24 -17.12 16 9 C 0.70 19.78 7.95 179.05 1.42 21.21 16 10 O -0.62 -22.26 12.21 -3.98 -0.05 -22.31 16 11 N -0.73 -19.43 5.08 -457.68 -2.33 -21.75 16 12 C 0.18 6.34 2.42 45.02 0.11 6.45 16 13 C -0.12 -4.44 5.65 30.67 0.17 -4.27 16 14 C 0.14 6.38 6.52 86.36 0.56 6.95 16 15 N -0.61 -31.08 2.99 -699.11 -2.09 -33.18 16 16 C -0.26 -14.46 9.58 84.03 0.81 -13.66 16 17 H 0.07 3.60 7.88 -2.91 -0.02 3.58 16 18 C -0.05 -2.86 4.92 84.86 0.42 -2.45 16 19 N -0.94 -55.60 11.19 21.65 0.24 -55.35 16 20 Si 0.97 44.89 29.59 68.60 2.03 46.92 16 21 H -0.27 -11.75 7.11 99.48 0.71 -11.05 16 22 H -0.29 -13.73 7.11 99.48 0.71 -13.03 16 23 H -0.29 -13.18 7.11 99.48 0.71 -12.47 16 24 C 0.18 8.63 5.30 86.36 0.46 9.09 16 25 C -0.13 -4.60 5.55 30.67 0.17 -4.43 16 26 C 0.05 0.77 11.15 85.24 0.95 1.72 16 27 N -0.33 -6.29 12.58 -57.02 -0.72 -7.01 16 28 H 0.09 0.24 8.14 -2.39 -0.02 0.22 16 29 H 0.09 0.44 8.14 -2.39 -0.02 0.42 16 30 H 0.12 -0.11 8.14 -2.39 -0.02 -0.13 16 31 H 0.21 1.00 8.06 -2.91 -0.02 0.98 16 32 H 0.08 1.19 8.00 -2.39 -0.02 1.18 16 33 H 0.05 1.48 6.17 -2.39 -0.01 1.47 16 34 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 35 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 36 H 0.05 1.47 6.16 -2.39 -0.01 1.45 16 37 H 0.08 1.19 8.00 -2.39 -0.02 1.17 16 38 H 0.40 6.07 6.47 -92.71 -0.60 5.47 16 39 H 0.41 8.19 8.62 -92.72 -0.80 7.40 16 40 H 0.06 2.27 7.57 -2.39 -0.02 2.25 16 41 H 0.06 2.24 8.14 -2.38 -0.02 2.22 16 42 H 0.06 2.13 8.14 -2.39 -0.02 2.11 16 43 H 0.01 0.33 8.14 -2.39 -0.02 0.31 16 44 H 0.06 2.41 7.93 -2.39 -0.02 2.39 16 45 H 0.25 14.34 8.31 -92.71 -0.77 13.57 16 46 H -0.01 -0.30 8.14 -2.39 -0.02 -0.32 16 47 H 0.06 3.37 6.07 -2.39 -0.01 3.36 16 48 H 0.07 2.39 8.14 -2.39 -0.02 2.38 16 49 H 0.07 2.38 8.14 -2.39 -0.02 2.36 16 50 H 0.19 2.36 6.71 -2.91 -0.02 2.34 16 Total: -1.00 -75.60 393.19 1.45 -74.15 By element: Atomic # 1 Polarization: 22.06 SS G_CDS: -0.45 Total: 21.62 kcal Atomic # 6 Polarization: 12.03 SS G_CDS: 8.53 Total: 20.56 kcal Atomic # 7 Polarization: -132.33 SS G_CDS: -8.62 Total: -140.94 kcal Atomic # 8 Polarization: -22.26 SS G_CDS: -0.05 Total: -22.31 kcal Atomic # 14 Polarization: 44.89 SS G_CDS: 2.03 Total: 46.92 kcal Total: -75.60 1.45 -74.15 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610402439.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.614 kcal (2) G-P(sol) polarization free energy of solvation -75.600 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.015 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.451 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.149 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.465 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds