Wall clock time and date at job start Tue Mar 31 2020 20:57:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52998 * 109.47302 * 2 1 4 4 C 1.53009 * 109.47154 * 239.99912 * 2 1 3 5 5 N 1.46502 * 109.47017 * 120.00297 * 2 1 3 6 6 C 1.35850 * 126.06274 * 75.31020 * 5 2 1 7 7 C 1.35720 * 107.56277 * 180.17876 * 6 5 2 8 8 N 1.40846 * 126.07503 * 179.83586 * 7 6 5 9 9 C 1.34776 * 120.00065 * 179.71774 * 8 7 6 10 10 O 1.21601 * 120.00095 * 0.02562 * 9 8 7 11 11 N 1.34778 * 119.99808 * 180.02562 * 9 8 7 12 12 C 1.46504 * 120.00011 * 180.02562 * 11 9 8 13 13 C 1.53352 * 109.41782 * 275.12821 * 12 11 9 14 14 C 1.53190 * 109.15070 * 178.67570 * 13 12 11 15 15 N 1.46925 * 108.89356 * 54.57285 * 14 13 12 16 16 C 1.36935 * 120.62758 * 126.30089 * 15 14 13 17 17 H 1.08001 * 120.00088 * 332.62829 * 16 15 14 18 18 C 1.38817 * 119.99782 * 152.62208 * 16 15 14 19 19 N 1.31618 * 119.99923 * 159.36242 * 18 16 15 20 20 Si 1.86801 * 120.00195 * 339.36341 * 18 16 15 21 21 H 1.48501 * 109.47054 * 92.89675 * 20 18 16 22 22 H 1.48497 * 109.47324 * 212.90179 * 20 18 16 23 23 H 1.48501 * 109.46722 * 332.89954 * 20 18 16 24 24 C 1.46926 * 118.73822 * 306.31916 * 15 14 13 25 25 C 1.53037 * 109.46184 * 154.99596 * 12 11 9 26 26 C 1.40233 * 107.85262 * 359.57941 * 7 6 5 27 27 N 1.30840 * 108.34246 * 0.25790 * 26 7 6 28 28 H 1.09002 * 109.47593 * 299.99902 * 1 2 3 29 29 H 1.09005 * 109.47552 * 60.00320 * 1 2 3 30 30 H 1.09006 * 109.47456 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.47645 * 179.97438 * 3 2 1 32 32 H 1.08998 * 109.47188 * 300.00082 * 3 2 1 33 33 H 1.08998 * 109.46910 * 60.00031 * 3 2 1 34 34 H 1.08999 * 109.46793 * 300.00324 * 4 2 1 35 35 H 1.08998 * 109.46934 * 60.00164 * 4 2 1 36 36 H 1.08996 * 109.46951 * 179.97438 * 4 2 1 37 37 H 1.07998 * 126.21568 * 0.02562 * 6 5 2 38 38 H 0.97003 * 120.00042 * 359.71563 * 8 7 6 39 39 H 0.97003 * 120.00299 * 359.97438 * 11 9 8 40 40 H 1.09008 * 109.45773 * 35.02385 * 12 11 9 41 41 H 1.09004 * 109.68561 * 58.70322 * 13 12 11 42 42 H 1.09004 * 109.47287 * 298.50983 * 13 12 11 43 43 H 1.09004 * 109.58215 * 294.71811 * 14 13 12 44 44 H 1.08997 * 109.58828 * 174.43980 * 14 13 12 45 45 H 0.96999 * 119.99917 * 180.02562 * 19 18 16 46 46 H 1.09002 * 109.58248 * 173.39705 * 24 15 14 47 47 H 1.08994 * 109.58922 * 293.68210 * 24 15 14 48 48 H 1.09003 * 109.49698 * 61.43756 * 25 12 11 49 49 H 1.08994 * 109.52761 * 301.35170 * 25 12 11 50 50 H 1.07995 * 125.83251 * 180.22776 * 26 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2493 5 7 2.0183 -0.6907 1.1962 6 6 2.0223 -2.0340 1.3983 7 6 2.5505 -2.2617 2.6276 8 7 2.7336 -3.5209 3.2314 9 6 3.2780 -3.6056 4.4614 10 8 3.6107 -2.5949 5.0501 11 7 3.4537 -4.8107 5.0390 12 6 4.0450 -4.9028 6.3762 13 6 5.5740 -4.8959 6.2592 14 6 6.1857 -4.9591 7.6623 15 7 5.6381 -6.1256 8.3679 16 6 6.4715 -7.0555 8.9300 17 1 7.4591 -7.2122 8.5219 18 6 6.0470 -7.7965 10.0243 19 7 6.6370 -8.9363 10.3162 20 14 4.6384 -7.1762 11.0828 21 1 3.3598 -7.7491 10.5906 22 1 4.8573 -7.5919 12.4915 23 1 4.5782 -5.6943 11.0077 24 6 4.1793 -6.2757 8.4587 25 6 3.5871 -6.1995 7.0479 26 6 2.8871 -1.0207 3.1873 27 7 2.5690 -0.0832 2.3318 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 3.1299 1.4425 0.0005 32 1 1.6767 1.9563 -0.8900 33 1 1.6767 1.9563 0.8900 34 1 1.6766 -1.7489 -1.2493 35 1 1.6767 -0.2075 -2.1393 36 1 3.1299 -0.7209 -1.2495 37 1 1.6671 -2.7843 0.7074 38 1 2.4679 -4.3271 2.7620 39 1 3.1880 -5.6169 4.5696 40 1 3.7234 -4.0505 6.9749 41 1 5.9000 -3.9829 5.7609 42 1 5.8982 -5.7617 5.6817 43 1 5.9369 -4.0504 8.2105 44 1 7.2688 -5.0540 7.5848 45 1 6.3402 -9.4543 11.0807 46 1 3.9384 -7.2408 8.9044 47 1 3.7673 -5.4759 9.0739 48 1 3.9299 -7.0529 6.4629 49 1 2.4990 -6.2136 7.1089 50 1 3.3324 -0.8653 4.1589 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000772370136.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:57:37 Heat of formation + Delta-G solvation = 76.139868 kcal Electronic energy + Delta-G solvation = -29009.039795 eV Core-core repulsion = 25074.013579 eV Total energy + Delta-G solvation = -3935.026216 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -41.56363 -39.98820 -37.88667 -37.03444 -34.64137 -34.46583 -32.12800 -30.71443 -30.44521 -30.16636 -28.67241 -27.93539 -27.60122 -24.93590 -23.02114 -22.85096 -22.27929 -21.25816 -20.62156 -19.87311 -19.37616 -17.95294 -17.52757 -16.77067 -16.22349 -15.71710 -15.40215 -15.16628 -14.89039 -14.73215 -14.31030 -14.13486 -14.04997 -13.94104 -13.75482 -13.14581 -13.03202 -12.89807 -12.78486 -12.68110 -12.60423 -12.37277 -12.25911 -11.96646 -11.77944 -11.70927 -11.63094 -11.01237 -10.82431 -10.78472 -10.78211 -10.53664 -10.25268 -10.16441 -9.97655 -9.74752 -9.47116 -9.45426 -8.85344 -8.62405 -7.75129 -6.97764 -5.94020 -3.29620 1.67946 2.10541 2.65017 2.73541 3.32086 3.43529 3.50318 3.53871 4.02017 4.20910 4.27521 4.38296 4.53852 4.55009 4.85713 4.94509 4.97441 5.03799 5.13968 5.15330 5.22585 5.25135 5.32815 5.35476 5.41449 5.44346 5.50194 5.53703 5.67935 5.69617 5.84356 5.84816 6.05687 6.08791 6.16915 6.18018 6.33315 6.44154 6.59047 6.67385 6.67596 6.77504 6.77986 6.88324 6.90417 7.02780 7.62148 7.97289 7.99379 8.34017 8.60434 8.95128 9.72990 10.10780 11.21942 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.037143 B = 0.001965 C = 0.001960 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 753.652893 B =14248.582566 C =14282.712137 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.187 3.813 3 C -0.144 4.144 4 C -0.159 4.159 5 N -0.365 5.365 6 C 0.006 3.994 7 C 0.029 3.971 8 N -0.664 5.664 9 C 0.706 3.294 10 O -0.578 6.578 11 N -0.735 5.735 12 C 0.169 3.831 13 C -0.141 4.141 14 C 0.150 3.850 15 N -0.606 5.606 16 C -0.258 4.258 17 H 0.086 0.914 18 C 0.022 3.978 19 N -0.909 5.909 20 Si 0.881 3.119 21 H -0.289 1.289 22 H -0.303 1.303 23 H -0.269 1.269 24 C 0.129 3.871 25 C -0.140 4.140 26 C 0.051 3.949 27 N -0.284 5.284 28 H 0.065 0.935 29 H 0.076 0.924 30 H 0.062 0.938 31 H 0.065 0.935 32 H 0.071 0.929 33 H 0.072 0.928 34 H 0.064 0.936 35 H 0.079 0.921 36 H 0.066 0.934 37 H 0.170 0.830 38 H 0.403 0.597 39 H 0.393 0.607 40 H 0.084 0.916 41 H 0.061 0.939 42 H 0.062 0.938 43 H 0.026 0.974 44 H 0.065 0.935 45 H 0.262 0.738 46 H 0.077 0.923 47 H 0.028 0.972 48 H 0.070 0.930 49 H 0.059 0.941 50 H 0.207 0.793 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.898 14.519 -25.216 32.246 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.104 3.896 3 C -0.202 4.202 4 C -0.217 4.217 5 N -0.152 5.152 6 C -0.141 4.141 7 C -0.076 4.076 8 N -0.312 5.312 9 C 0.407 3.593 10 O -0.455 6.455 11 N -0.388 5.388 12 C 0.065 3.935 13 C -0.182 4.182 14 C 0.024 3.976 15 N -0.330 5.330 16 C -0.386 4.386 17 H 0.103 0.897 18 C -0.177 4.177 19 N -0.552 5.552 20 Si 0.712 3.288 21 H -0.217 1.217 22 H -0.231 1.231 23 H -0.194 1.194 24 C 0.003 3.997 25 C -0.180 4.180 26 C -0.137 4.137 27 N -0.105 5.105 28 H 0.084 0.916 29 H 0.095 0.905 30 H 0.081 0.919 31 H 0.084 0.916 32 H 0.090 0.910 33 H 0.091 0.909 34 H 0.083 0.917 35 H 0.098 0.902 36 H 0.086 0.914 37 H 0.187 0.813 38 H 0.237 0.763 39 H 0.227 0.773 40 H 0.103 0.897 41 H 0.079 0.921 42 H 0.080 0.920 43 H 0.044 0.956 44 H 0.084 0.916 45 H 0.072 0.928 46 H 0.095 0.905 47 H 0.046 0.954 48 H 0.088 0.912 49 H 0.078 0.922 50 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges -13.586 16.582 -24.828 32.802 hybrid contribution -1.107 -1.716 0.294 2.063 sum -14.693 14.865 -24.534 32.230 Atomic orbital electron populations 1.22267 0.93167 1.03016 1.03299 1.20631 0.94151 0.93583 0.81232 1.21909 1.02304 0.92934 1.03034 1.22242 1.02447 1.00947 0.96094 1.48587 1.49061 1.03351 1.14154 1.21610 1.07486 0.87349 0.97687 1.17487 1.10011 0.86131 0.93960 1.41912 1.65697 1.06402 1.17165 1.15845 0.78516 0.84602 0.80386 1.90801 1.56718 1.34382 1.63645 1.45435 1.67081 1.06162 1.20150 1.20959 0.93121 0.99033 0.80370 1.22456 0.94566 1.01287 0.99876 1.20901 0.97459 0.89420 0.89847 1.44406 1.00407 1.24080 1.64099 1.18931 0.99060 1.11935 1.08707 0.89651 1.25292 0.98026 0.96785 0.97585 1.69837 1.43764 1.12244 1.29338 0.86972 0.81981 0.79856 0.80005 1.21663 1.23139 1.19438 1.21307 0.84930 1.00325 0.93136 1.22350 0.99523 0.96540 0.99588 1.24563 1.00297 0.88188 1.00617 1.77358 1.17082 1.22147 0.93917 0.91560 0.90527 0.91885 0.91562 0.91037 0.90922 0.91679 0.90215 0.91449 0.81322 0.76259 0.77332 0.89748 0.92072 0.91962 0.95616 0.91632 0.92797 0.90539 0.95407 0.91161 0.92233 0.77685 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.85 8.73 37.15 0.32 -0.53 16 2 C 0.19 1.25 1.24 -131.82 -0.16 1.08 16 3 C -0.14 -0.95 8.09 37.16 0.30 -0.65 16 4 C -0.16 -0.74 8.29 37.16 0.31 -0.43 16 5 N -0.36 -3.61 3.45 -48.32 -0.17 -3.77 16 6 C 0.01 0.06 10.67 -16.67 -0.18 -0.12 16 7 C 0.03 0.35 6.90 -83.86 -0.58 -0.23 16 8 N -0.66 -7.02 5.48 -14.39 -0.08 -7.10 16 9 C 0.71 9.78 8.50 -86.92 -0.74 9.04 16 10 O -0.58 -10.08 13.16 5.28 0.07 -10.01 16 11 N -0.73 -9.28 5.08 -58.47 -0.30 -9.58 16 12 C 0.17 2.68 2.42 -67.73 -0.16 2.51 16 13 C -0.14 -2.42 5.68 -26.45 -0.15 -2.57 16 14 C 0.15 3.02 6.50 -3.71 -0.02 3.00 16 15 N -0.61 -14.27 2.77 -172.32 -0.48 -14.74 16 16 C -0.26 -7.16 10.03 -15.06 -0.15 -7.31 16 17 H 0.09 2.53 8.06 -52.49 -0.42 2.11 16 18 C 0.02 0.63 5.23 -17.43 -0.09 0.54 16 19 N -0.91 -27.70 13.97 55.49 0.78 -26.92 16 20 Si 0.88 22.26 24.34 -169.99 -4.14 18.13 16 21 H -0.29 -6.97 6.62 56.52 0.37 -6.59 16 22 H -0.30 -7.82 7.11 56.52 0.40 -7.42 16 23 H -0.27 -6.74 6.64 56.52 0.38 -6.36 16 24 C 0.13 2.75 4.21 -3.71 -0.02 2.74 16 25 C -0.14 -2.32 5.55 -26.61 -0.15 -2.46 16 26 C 0.05 0.71 10.84 -17.22 -0.19 0.52 16 27 N -0.28 -3.70 11.65 30.70 0.36 -3.35 16 28 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.08 0.26 8.14 -51.93 -0.42 -0.17 16 30 H 0.06 0.32 8.14 -51.93 -0.42 -0.11 16 31 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 33 H 0.07 0.58 8.04 -51.93 -0.42 0.16 16 34 H 0.06 0.25 7.38 -51.93 -0.38 -0.13 16 35 H 0.08 0.23 8.14 -51.93 -0.42 -0.20 16 36 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 37 H 0.17 0.94 7.57 -52.49 -0.40 0.54 16 38 H 0.40 2.79 8.84 -40.82 -0.36 2.43 16 39 H 0.39 3.78 8.62 -40.82 -0.35 3.43 16 40 H 0.08 1.49 7.58 -51.92 -0.39 1.10 16 41 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 42 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 43 H 0.03 0.52 8.14 -51.93 -0.42 0.09 16 44 H 0.07 1.31 7.93 -51.93 -0.41 0.90 16 45 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 46 H 0.08 1.77 4.50 -51.93 -0.23 1.54 16 47 H 0.03 0.60 7.07 -51.93 -0.37 0.23 16 48 H 0.07 1.16 8.14 -51.93 -0.42 0.73 16 49 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 50 H 0.21 3.18 5.91 -52.49 -0.31 2.87 16 LS Contribution 390.67 15.07 5.89 5.89 Total: -1.00 -34.23 390.67 -8.04 -42.26 By element: Atomic # 1 Polarization: 12.38 SS G_CDS: -8.31 Total: 4.07 kcal Atomic # 6 Polarization: 6.78 SS G_CDS: -1.66 Total: 5.13 kcal Atomic # 7 Polarization: -65.57 SS G_CDS: 0.11 Total: -65.46 kcal Atomic # 8 Polarization: -10.08 SS G_CDS: 0.07 Total: -10.01 kcal Atomic # 14 Polarization: 22.26 SS G_CDS: -4.14 Total: 18.13 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -34.23 -8.04 -42.26 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000772370136.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.403 kcal (2) G-P(sol) polarization free energy of solvation -34.225 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.177 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.037 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.263 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.140 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds