Wall clock time and date at job start Tue Mar 31 2020 20:57:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52998 * 109.47302 * 2 1 4 4 C 1.53009 * 109.47154 * 239.99912 * 2 1 3 5 5 N 1.46502 * 109.47017 * 120.00297 * 2 1 3 6 6 C 1.35850 * 126.06274 * 75.31020 * 5 2 1 7 7 C 1.35720 * 107.56277 * 180.17876 * 6 5 2 8 8 N 1.40846 * 126.07503 * 179.83586 * 7 6 5 9 9 C 1.34776 * 120.00065 * 179.71774 * 8 7 6 10 10 O 1.21601 * 120.00095 * 0.02562 * 9 8 7 11 11 N 1.34778 * 119.99808 * 180.02562 * 9 8 7 12 12 C 1.46504 * 120.00011 * 180.02562 * 11 9 8 13 13 C 1.53352 * 109.41782 * 275.12821 * 12 11 9 14 14 C 1.53190 * 109.15070 * 178.67570 * 13 12 11 15 15 N 1.46925 * 108.89356 * 54.57285 * 14 13 12 16 16 C 1.36935 * 120.62758 * 126.30089 * 15 14 13 17 17 H 1.08001 * 120.00088 * 332.62829 * 16 15 14 18 18 C 1.38817 * 119.99782 * 152.62208 * 16 15 14 19 19 N 1.31618 * 119.99923 * 159.36242 * 18 16 15 20 20 Si 1.86801 * 120.00195 * 339.36341 * 18 16 15 21 21 H 1.48501 * 109.47054 * 92.89675 * 20 18 16 22 22 H 1.48497 * 109.47324 * 212.90179 * 20 18 16 23 23 H 1.48501 * 109.46722 * 332.89954 * 20 18 16 24 24 C 1.46926 * 118.73822 * 306.31916 * 15 14 13 25 25 C 1.53037 * 109.46184 * 154.99596 * 12 11 9 26 26 C 1.40233 * 107.85262 * 359.57941 * 7 6 5 27 27 N 1.30840 * 108.34246 * 0.25790 * 26 7 6 28 28 H 1.09002 * 109.47593 * 299.99902 * 1 2 3 29 29 H 1.09005 * 109.47552 * 60.00320 * 1 2 3 30 30 H 1.09006 * 109.47456 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.47645 * 179.97438 * 3 2 1 32 32 H 1.08998 * 109.47188 * 300.00082 * 3 2 1 33 33 H 1.08998 * 109.46910 * 60.00031 * 3 2 1 34 34 H 1.08999 * 109.46793 * 300.00324 * 4 2 1 35 35 H 1.08998 * 109.46934 * 60.00164 * 4 2 1 36 36 H 1.08996 * 109.46951 * 179.97438 * 4 2 1 37 37 H 1.07998 * 126.21568 * 0.02562 * 6 5 2 38 38 H 0.97003 * 120.00042 * 359.71563 * 8 7 6 39 39 H 0.97003 * 120.00299 * 359.97438 * 11 9 8 40 40 H 1.09008 * 109.45773 * 35.02385 * 12 11 9 41 41 H 1.09004 * 109.68561 * 58.70322 * 13 12 11 42 42 H 1.09004 * 109.47287 * 298.50983 * 13 12 11 43 43 H 1.09004 * 109.58215 * 294.71811 * 14 13 12 44 44 H 1.08997 * 109.58828 * 174.43980 * 14 13 12 45 45 H 0.96999 * 119.99917 * 180.02562 * 19 18 16 46 46 H 1.09002 * 109.58248 * 173.39705 * 24 15 14 47 47 H 1.08994 * 109.58922 * 293.68210 * 24 15 14 48 48 H 1.09003 * 109.49698 * 61.43756 * 25 12 11 49 49 H 1.08994 * 109.52761 * 301.35170 * 25 12 11 50 50 H 1.07995 * 125.83251 * 180.22776 * 26 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2493 5 7 2.0183 -0.6907 1.1962 6 6 2.0223 -2.0340 1.3983 7 6 2.5505 -2.2617 2.6276 8 7 2.7336 -3.5209 3.2314 9 6 3.2780 -3.6056 4.4614 10 8 3.6107 -2.5949 5.0501 11 7 3.4537 -4.8107 5.0390 12 6 4.0450 -4.9028 6.3762 13 6 5.5740 -4.8959 6.2592 14 6 6.1857 -4.9591 7.6623 15 7 5.6381 -6.1256 8.3679 16 6 6.4715 -7.0555 8.9300 17 1 7.4591 -7.2122 8.5219 18 6 6.0470 -7.7965 10.0243 19 7 6.6370 -8.9363 10.3162 20 14 4.6384 -7.1762 11.0828 21 1 3.3598 -7.7491 10.5906 22 1 4.8573 -7.5919 12.4915 23 1 4.5782 -5.6943 11.0077 24 6 4.1793 -6.2757 8.4587 25 6 3.5871 -6.1995 7.0479 26 6 2.8871 -1.0207 3.1873 27 7 2.5690 -0.0832 2.3318 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 3.1299 1.4425 0.0005 32 1 1.6767 1.9563 -0.8900 33 1 1.6767 1.9563 0.8900 34 1 1.6766 -1.7489 -1.2493 35 1 1.6767 -0.2075 -2.1393 36 1 3.1299 -0.7209 -1.2495 37 1 1.6671 -2.7843 0.7074 38 1 2.4679 -4.3271 2.7620 39 1 3.1880 -5.6169 4.5696 40 1 3.7234 -4.0505 6.9749 41 1 5.9000 -3.9829 5.7609 42 1 5.8982 -5.7617 5.6817 43 1 5.9369 -4.0504 8.2105 44 1 7.2688 -5.0540 7.5848 45 1 6.3402 -9.4543 11.0807 46 1 3.9384 -7.2408 8.9044 47 1 3.7673 -5.4759 9.0739 48 1 3.9299 -7.0529 6.4629 49 1 2.4990 -6.2136 7.1089 50 1 3.3324 -0.8653 4.1589 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000772370136.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:57:36 Heat of formation + Delta-G solvation = 51.529877 kcal Electronic energy + Delta-G solvation = -29010.106964 eV Core-core repulsion = 25074.013579 eV Total energy + Delta-G solvation = -3936.093385 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 2.25 seconds Orbital eigenvalues (eV) -42.40295 -41.06602 -39.31995 -37.71199 -36.05944 -35.49682 -33.99925 -31.97151 -31.77598 -31.51284 -29.54137 -28.30593 -28.16601 -26.70437 -24.56586 -23.73952 -23.67672 -22.50807 -21.52125 -21.14744 -20.42964 -19.06911 -18.68615 -18.13332 -17.45312 -16.91149 -16.57616 -16.06449 -15.91763 -15.90547 -15.73383 -15.31890 -15.23775 -14.82234 -14.77875 -14.56991 -14.45333 -14.20246 -13.81988 -13.74754 -13.45899 -13.19475 -13.13471 -13.09854 -12.70296 -12.57570 -12.52173 -12.29976 -12.24365 -12.16345 -12.00889 -11.79000 -11.66686 -11.56189 -11.53169 -11.32913 -11.16883 -10.69548 -10.29107 -10.05573 -8.95113 -8.59828 -8.14663 -5.46766 0.89061 1.30667 1.35315 1.44553 1.53202 1.65574 1.80762 2.42572 2.42950 3.07571 3.23913 3.37730 3.52638 3.80452 3.81786 3.91535 3.93783 4.01528 4.13847 4.26394 4.35284 4.50732 4.53368 4.55852 4.64941 4.65818 4.70422 4.73122 4.74942 4.84161 4.86777 4.88184 4.89880 4.95022 5.06183 5.09860 5.13027 5.18827 5.19648 5.28438 5.34109 5.43233 5.59062 5.87957 5.88668 6.02796 6.14411 6.21073 6.74229 6.92395 7.12397 7.60163 7.63018 8.03613 9.05079 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.037143 B = 0.001965 C = 0.001960 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 753.652893 B =14248.582566 C =14282.712137 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.174 3.826 3 C -0.143 4.143 4 C -0.154 4.154 5 N -0.358 5.358 6 C 0.033 3.967 7 C 0.003 3.997 8 N -0.644 5.644 9 C 0.702 3.298 10 O -0.618 6.618 11 N -0.721 5.721 12 C 0.181 3.819 13 C -0.127 4.127 14 C 0.146 3.854 15 N -0.619 5.619 16 C -0.247 4.247 17 H 0.053 0.947 18 C -0.034 4.034 19 N -0.956 5.956 20 Si 0.944 3.056 21 H -0.267 1.267 22 H -0.312 1.312 23 H -0.266 1.266 24 C 0.121 3.879 25 C -0.126 4.126 26 C 0.024 3.976 27 N -0.313 5.313 28 H 0.045 0.955 29 H 0.102 0.898 30 H 0.071 0.929 31 H 0.049 0.951 32 H 0.100 0.900 33 H 0.051 0.949 34 H 0.079 0.921 35 H 0.103 0.897 36 H 0.054 0.946 37 H 0.215 0.785 38 H 0.424 0.576 39 H 0.412 0.588 40 H 0.068 0.932 41 H 0.063 0.937 42 H 0.063 0.937 43 H 0.028 0.972 44 H 0.057 0.943 45 H 0.262 0.738 46 H 0.059 0.941 47 H 0.031 0.969 48 H 0.075 0.925 49 H 0.090 0.910 50 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.947 14.712 -28.575 36.334 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.093 3.907 3 C -0.200 4.200 4 C -0.212 4.212 5 N -0.144 5.144 6 C -0.116 4.116 7 C -0.103 4.103 8 N -0.294 5.294 9 C 0.402 3.598 10 O -0.498 6.498 11 N -0.375 5.375 12 C 0.075 3.925 13 C -0.168 4.168 14 C 0.021 3.979 15 N -0.343 5.343 16 C -0.377 4.377 17 H 0.070 0.930 18 C -0.229 4.229 19 N -0.602 5.602 20 Si 0.773 3.227 21 H -0.194 1.194 22 H -0.241 1.241 23 H -0.191 1.191 24 C -0.005 4.005 25 C -0.165 4.165 26 C -0.162 4.162 27 N -0.136 5.136 28 H 0.064 0.936 29 H 0.121 0.879 30 H 0.090 0.910 31 H 0.068 0.932 32 H 0.119 0.881 33 H 0.070 0.930 34 H 0.098 0.902 35 H 0.122 0.878 36 H 0.073 0.927 37 H 0.231 0.769 38 H 0.262 0.738 39 H 0.249 0.751 40 H 0.087 0.913 41 H 0.082 0.918 42 H 0.081 0.919 43 H 0.046 0.954 44 H 0.075 0.925 45 H 0.071 0.929 46 H 0.077 0.923 47 H 0.049 0.951 48 H 0.093 0.907 49 H 0.109 0.891 50 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges -16.688 16.788 -28.269 36.871 hybrid contribution -0.128 -1.651 1.167 2.025 sum -16.815 15.138 -27.102 35.305 Atomic orbital electron populations 1.22254 0.91684 1.03720 1.03599 1.21091 0.95247 0.93507 0.80850 1.21916 1.01238 0.93450 1.03438 1.22251 1.01635 1.01846 0.95513 1.49049 1.47456 1.03972 1.13947 1.22239 1.04734 0.87655 0.96968 1.17620 1.11868 0.85683 0.95089 1.41576 1.64733 1.07006 1.16037 1.15975 0.78547 0.84118 0.81131 1.90804 1.58309 1.35784 1.64907 1.45006 1.66728 1.06768 1.19047 1.20585 0.92063 0.98074 0.81760 1.22265 0.95624 1.01364 0.97516 1.21006 0.97310 0.88240 0.91367 1.44508 1.01255 1.24340 1.64221 1.18858 0.98454 1.11982 1.08370 0.92971 1.25885 1.01225 0.96910 0.98862 1.69959 1.46333 1.13714 1.30169 0.85956 0.80027 0.79257 0.77466 1.19373 1.24126 1.19097 1.21383 0.83557 0.99340 0.96194 1.22149 1.01089 0.96861 0.96438 1.24301 1.01687 0.89887 1.00359 1.77299 1.18337 1.22734 0.95197 0.93596 0.87926 0.90953 0.93194 0.88140 0.93000 0.90182 0.87794 0.92733 0.76891 0.73849 0.75125 0.91333 0.91839 0.91863 0.95377 0.92465 0.92945 0.92322 0.95085 0.90680 0.89116 0.80293 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.16 8.73 71.98 0.63 -0.53 16 2 C 0.17 1.88 1.24 3.60 0.00 1.89 16 3 C -0.14 -1.71 8.09 71.98 0.58 -1.13 16 4 C -0.15 -0.83 8.29 71.99 0.60 -0.23 16 5 N -0.36 -6.46 3.45 -306.79 -1.06 -7.52 16 6 C 0.03 0.50 10.67 83.49 0.89 1.39 16 7 C 0.00 0.06 6.90 37.59 0.26 0.32 16 8 N -0.64 -12.14 5.48 -317.71 -1.74 -13.88 16 9 C 0.70 18.41 8.50 179.05 1.52 19.93 16 10 O -0.62 -21.67 13.16 -4.03 -0.05 -21.73 16 11 N -0.72 -16.38 5.08 -457.15 -2.32 -18.71 16 12 C 0.18 5.38 2.42 45.12 0.11 5.49 16 13 C -0.13 -4.23 5.68 30.78 0.17 -4.06 16 14 C 0.15 5.89 6.50 86.36 0.56 6.45 16 15 N -0.62 -29.04 2.77 -699.10 -1.94 -30.98 16 16 C -0.25 -14.01 10.03 84.03 0.84 -13.16 16 17 H 0.05 3.24 8.06 -2.91 -0.02 3.22 16 18 C -0.03 -1.99 5.23 84.86 0.44 -1.54 16 19 N -0.96 -59.80 13.97 21.65 0.30 -59.50 16 20 Si 0.94 46.40 24.34 68.60 1.67 48.07 16 21 H -0.27 -12.11 6.62 99.48 0.66 -11.45 16 22 H -0.31 -15.70 7.11 99.48 0.71 -14.99 16 23 H -0.27 -12.79 6.64 99.48 0.66 -12.13 16 24 C 0.12 4.94 4.21 86.36 0.36 5.31 16 25 C -0.13 -3.82 5.55 30.67 0.17 -3.65 16 26 C 0.02 0.68 10.84 85.33 0.92 1.60 16 27 N -0.31 -8.30 11.65 -56.78 -0.66 -8.96 16 28 H 0.04 0.55 8.14 -2.39 -0.02 0.53 16 29 H 0.10 0.26 8.14 -2.38 -0.02 0.24 16 30 H 0.07 0.43 8.14 -2.38 -0.02 0.41 16 31 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 32 H 0.10 0.58 8.14 -2.39 -0.02 0.56 16 33 H 0.05 0.83 8.04 -2.39 -0.02 0.82 16 34 H 0.08 0.22 7.38 -2.39 -0.02 0.20 16 35 H 0.10 0.10 8.14 -2.39 -0.02 0.08 16 36 H 0.05 0.47 8.14 -2.39 -0.02 0.45 16 37 H 0.21 1.19 7.57 -2.91 -0.02 1.17 16 38 H 0.42 4.29 8.84 -92.71 -0.82 3.47 16 39 H 0.41 6.41 8.62 -92.71 -0.80 5.61 16 40 H 0.07 2.33 7.58 -2.38 -0.02 2.31 16 41 H 0.06 2.10 8.14 -2.38 -0.02 2.08 16 42 H 0.06 2.09 8.14 -2.39 -0.02 2.07 16 43 H 0.03 1.13 8.14 -2.39 -0.02 1.11 16 44 H 0.06 2.35 7.93 -2.39 -0.02 2.33 16 45 H 0.26 15.55 8.31 -92.71 -0.77 14.78 16 46 H 0.06 2.62 4.50 -2.39 -0.01 2.61 16 47 H 0.03 1.26 7.07 -2.39 -0.02 1.25 16 48 H 0.07 2.25 8.14 -2.39 -0.02 2.23 16 49 H 0.09 2.25 8.14 -2.39 -0.02 2.23 16 50 H 0.18 6.01 5.91 -2.91 -0.02 6.00 16 Total: -1.00 -78.75 390.67 1.51 -77.24 By element: Atomic # 1 Polarization: 18.66 SS G_CDS: -0.76 Total: 17.90 kcal Atomic # 6 Polarization: 9.99 SS G_CDS: 8.08 Total: 18.06 kcal Atomic # 7 Polarization: -132.13 SS G_CDS: -7.42 Total: -139.55 kcal Atomic # 8 Polarization: -21.67 SS G_CDS: -0.05 Total: -21.73 kcal Atomic # 14 Polarization: 46.40 SS G_CDS: 1.67 Total: 48.07 kcal Total: -78.75 1.51 -77.24 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000772370136.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.768 kcal (2) G-P(sol) polarization free energy of solvation -78.750 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.018 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.512 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.238 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.530 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.25 seconds