Wall clock time and date at job start Tue Mar 31 2020 20:57:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52997 * 109.47665 * 2 1 4 4 C 1.53005 * 109.46817 * 240.00347 * 2 1 3 5 5 N 1.46501 * 109.47328 * 120.00490 * 2 1 3 6 6 C 1.35851 * 126.05873 * 74.99580 * 5 2 1 7 7 C 1.35723 * 107.55909 * 180.02562 * 6 5 2 8 8 N 1.40846 * 126.07367 * 180.02562 * 7 6 5 9 9 C 1.34773 * 120.00227 * 180.02562 * 8 7 6 10 10 O 1.21599 * 120.00275 * 354.78738 * 9 8 7 11 11 N 1.34780 * 120.00357 * 174.79272 * 9 8 7 12 12 C 1.47072 * 120.88380 * 184.71826 * 11 9 8 13 13 C 1.53697 * 108.27976 * 128.75408 * 12 11 9 14 14 N 1.46897 * 109.25911 * 54.07871 * 13 12 11 15 15 C 1.46900 * 111.00017 * 172.60983 * 14 13 12 16 16 C 1.50701 * 109.46908 * 294.30297 * 15 14 13 17 17 H 1.07992 * 120.00357 * 359.97438 * 16 15 14 18 18 C 1.37881 * 119.99759 * 179.97438 * 16 15 14 19 19 N 1.31516 * 119.99735 * 0.02562 * 18 16 15 20 20 Si 1.86792 * 120.00155 * 179.97438 * 18 16 15 21 21 H 1.48504 * 109.47085 * 59.99998 * 20 18 16 22 22 H 1.48493 * 109.47578 * 179.97438 * 20 18 16 23 23 H 1.48504 * 109.47145 * 300.00517 * 20 18 16 24 24 C 1.46898 * 111.26742 * 296.76035 * 14 13 12 25 25 C 1.47088 * 120.87941 * 4.98915 * 11 9 8 26 26 C 1.40232 * 107.85585 * 0.02562 * 7 6 5 27 27 N 1.30839 * 108.34023 * 359.97438 * 26 7 6 28 28 H 1.09004 * 109.46665 * 299.99534 * 1 2 3 29 29 H 1.09000 * 109.47250 * 59.99503 * 1 2 3 30 30 H 1.08998 * 109.47358 * 179.97438 * 1 2 3 31 31 H 1.08994 * 109.47578 * 180.02562 * 3 2 1 32 32 H 1.09000 * 109.47192 * 300.00533 * 3 2 1 33 33 H 1.09005 * 109.47117 * 60.00154 * 3 2 1 34 34 H 1.08998 * 109.46925 * 299.99981 * 4 2 1 35 35 H 1.08992 * 109.47298 * 59.99833 * 4 2 1 36 36 H 1.09001 * 109.47653 * 180.02562 * 4 2 1 37 37 H 1.08002 * 126.21857 * 0.02562 * 6 5 2 38 38 H 0.97004 * 120.00190 * 0.02562 * 8 7 6 39 39 H 1.09004 * 109.62588 * 248.52003 * 12 11 9 40 40 H 1.09004 * 109.63076 * 9.09416 * 12 11 9 41 41 H 1.08997 * 109.64274 * 294.07250 * 13 12 11 42 42 H 1.09002 * 109.42259 * 173.94938 * 13 12 11 43 43 H 1.08999 * 109.47145 * 54.30465 * 15 14 13 44 44 H 1.09002 * 109.46860 * 174.30577 * 15 14 13 45 45 H 0.97001 * 119.99552 * 180.02562 * 19 18 16 46 46 H 1.08997 * 109.49483 * 303.14086 * 24 14 13 47 47 H 1.08999 * 109.49257 * 183.06343 * 24 14 13 48 48 H 1.09004 * 109.62641 * 350.90455 * 25 11 9 49 49 H 1.09000 * 109.62547 * 111.47504 * 25 11 9 50 50 H 1.07999 * 125.83428 * 180.02562 * 26 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0399 -0.7212 -1.2493 5 7 2.0183 -0.6907 1.1961 6 6 2.0168 -2.0337 1.4006 7 6 2.5505 -2.2617 2.6275 8 7 2.7341 -3.5210 3.2310 9 6 3.2784 -3.6058 4.4610 10 8 3.6979 -2.6055 5.0107 11 7 3.3580 -4.7994 5.0820 12 6 3.8530 -4.9003 6.4632 13 6 2.8331 -5.7066 7.2831 14 7 2.5844 -6.9923 6.6175 15 6 1.7514 -7.8660 7.4547 16 6 2.5109 -8.2402 8.7014 17 1 3.5124 -7.8667 8.8561 18 6 1.9273 -9.0593 9.6444 19 7 0.7079 -9.5145 9.4557 20 14 2.8689 -9.5238 11.1894 21 1 3.2145 -8.2941 11.9469 22 1 2.0264 -10.4058 12.0363 23 1 4.1143 -10.2400 10.8135 24 6 1.9787 -6.7985 5.2934 25 6 2.9578 -6.0364 4.3941 26 6 2.8866 -1.0208 3.1875 27 7 2.5687 -0.0833 2.3320 28 1 -0.3633 0.5138 0.8901 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3634 -1.0276 -0.0005 31 1 3.1300 1.4424 -0.0005 32 1 1.6767 1.9563 -0.8899 33 1 1.6768 1.9563 0.8900 34 1 1.6765 -1.7488 -1.2494 35 1 1.6765 -0.2074 -2.1392 36 1 3.1299 -0.7217 -1.2493 37 1 1.6565 -2.7837 0.7120 38 1 2.4688 -4.3273 2.7615 39 1 4.8171 -5.4088 6.4704 40 1 3.9592 -3.9021 6.8880 41 1 1.8996 -5.1488 7.3573 42 1 3.2310 -5.8851 8.2821 43 1 0.8368 -7.3409 7.7303 44 1 1.4986 -8.7687 6.8986 45 1 0.2972 -10.0904 10.1194 46 1 1.0570 -6.2256 5.3952 47 1 1.7569 -7.7689 4.8493 48 1 2.4718 -5.7896 3.4501 49 1 3.8375 -6.6519 4.2062 50 1 3.3326 -0.8654 4.1588 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000878828709.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:57:15 Heat of formation + Delta-G solvation = 70.995020 kcal Electronic energy + Delta-G solvation = -29052.090411 eV Core-core repulsion = 25116.841097 eV Total energy + Delta-G solvation = -3935.249313 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.53926 -40.13673 -37.81767 -36.96248 -34.68841 -34.29116 -32.39474 -30.81056 -30.63805 -29.15169 -28.03757 -27.88417 -27.45329 -25.47983 -23.39059 -22.84792 -22.41020 -21.37928 -20.49271 -19.95168 -18.75457 -18.02816 -17.25253 -16.39972 -16.10136 -15.73392 -15.30243 -15.14344 -14.76673 -14.66521 -14.46731 -14.25394 -14.02233 -13.87528 -13.78224 -13.55005 -13.07409 -12.97620 -12.70535 -12.64760 -12.55683 -12.25445 -12.21919 -12.02223 -11.67591 -11.58670 -11.30872 -11.18185 -10.86558 -10.78610 -10.75010 -10.72052 -10.60960 -10.52825 -9.95268 -9.85278 -9.42695 -9.30160 -8.56086 -8.45779 -7.68356 -7.34386 -6.06862 -4.08723 1.72240 2.14998 2.67410 2.72915 3.32135 3.36307 3.39072 3.45202 3.84996 4.07878 4.31458 4.38484 4.42031 4.59257 4.73784 4.90164 4.98844 5.07920 5.15739 5.18552 5.21121 5.26797 5.27887 5.34356 5.36166 5.39263 5.48540 5.53705 5.55249 5.65236 5.72296 5.81255 5.87451 5.91496 6.00983 6.16082 6.19171 6.40355 6.54516 6.66623 6.82070 6.94972 6.99714 7.20136 7.26773 7.65578 7.72989 7.92941 7.99542 8.10599 8.46167 8.59815 8.98266 9.55867 11.03884 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.030733 B = 0.001982 C = 0.001935 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 910.846682 B =14123.274365 C =14470.418926 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.187 3.813 3 C -0.144 4.144 4 C -0.159 4.159 5 N -0.365 5.365 6 C 0.006 3.994 7 C 0.030 3.970 8 N -0.663 5.663 9 C 0.711 3.289 10 O -0.584 6.584 11 N -0.621 5.621 12 C 0.134 3.866 13 C 0.050 3.950 14 N -0.535 5.535 15 C 0.194 3.806 16 C -0.510 4.510 17 H 0.064 0.936 18 C 0.056 3.944 19 N -0.898 5.898 20 Si 0.899 3.101 21 H -0.277 1.277 22 H -0.288 1.288 23 H -0.276 1.276 24 C 0.040 3.960 25 C 0.117 3.883 26 C 0.050 3.950 27 N -0.284 5.284 28 H 0.065 0.935 29 H 0.076 0.924 30 H 0.063 0.937 31 H 0.065 0.935 32 H 0.071 0.929 33 H 0.072 0.928 34 H 0.065 0.935 35 H 0.079 0.921 36 H 0.066 0.934 37 H 0.170 0.830 38 H 0.404 0.596 39 H 0.072 0.928 40 H 0.090 0.910 41 H 0.025 0.975 42 H 0.098 0.902 43 H -0.009 1.009 44 H 0.031 0.969 45 H 0.262 0.738 46 H 0.027 0.973 47 H 0.081 0.919 48 H 0.068 0.932 49 H 0.078 0.922 50 H 0.206 0.794 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.666 16.000 -23.031 28.051 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.104 3.896 3 C -0.201 4.201 4 C -0.217 4.217 5 N -0.151 5.151 6 C -0.141 4.141 7 C -0.076 4.076 8 N -0.313 5.313 9 C 0.413 3.587 10 O -0.462 6.462 11 N -0.358 5.358 12 C 0.011 3.989 13 C -0.079 4.079 14 N -0.260 5.260 15 C 0.069 3.931 16 C -0.549 4.549 17 H 0.082 0.918 18 C -0.146 4.146 19 N -0.538 5.538 20 Si 0.727 3.273 21 H -0.202 1.202 22 H -0.214 1.214 23 H -0.201 1.201 24 C -0.090 4.090 25 C -0.006 4.006 26 C -0.137 4.137 27 N -0.106 5.106 28 H 0.084 0.916 29 H 0.095 0.905 30 H 0.082 0.918 31 H 0.084 0.916 32 H 0.089 0.911 33 H 0.091 0.909 34 H 0.084 0.916 35 H 0.098 0.902 36 H 0.085 0.915 37 H 0.187 0.813 38 H 0.241 0.759 39 H 0.090 0.910 40 H 0.108 0.892 41 H 0.043 0.957 42 H 0.116 0.884 43 H 0.009 0.991 44 H 0.049 0.951 45 H 0.072 0.928 46 H 0.045 0.955 47 H 0.100 0.900 48 H 0.086 0.914 49 H 0.096 0.904 50 H 0.222 0.778 Dipole moment (debyes) X Y Z Total from point charges 1.215 17.635 -22.897 28.927 hybrid contribution -0.683 -1.597 0.845 1.932 sum 0.532 16.037 -22.052 27.272 Atomic orbital electron populations 1.22271 0.93143 1.03093 1.03292 1.20629 0.94180 0.93545 0.81236 1.21905 1.02241 0.92963 1.03019 1.22239 1.02394 1.00999 0.96081 1.48574 1.49073 1.03367 1.14130 1.21610 1.07379 0.87347 0.97754 1.17508 1.09819 0.86145 0.94080 1.42067 1.65518 1.06468 1.17257 1.15667 0.78794 0.83853 0.80380 1.90770 1.54349 1.34753 1.66363 1.47396 1.68006 1.04641 1.15714 1.21878 0.97316 1.01054 0.78655 1.22465 0.97090 0.89637 0.98725 1.62081 1.48882 1.12776 1.02249 1.19722 0.90729 0.90902 0.91719 1.21100 1.01196 1.29636 1.02930 0.91787 1.24995 0.94988 0.96033 0.98579 1.69947 1.13700 1.34356 1.35753 0.86539 0.79690 0.78438 0.82622 1.20213 1.21400 1.20131 1.22381 0.94634 0.99418 0.92518 1.21809 0.99164 0.85407 0.94261 1.24518 1.00398 0.88197 1.00576 1.77337 1.17199 1.22123 0.93892 0.91552 0.90533 0.91822 0.91605 0.91057 0.90931 0.91645 0.90223 0.91486 0.81284 0.75891 0.90960 0.89161 0.95652 0.88389 0.99109 0.95069 0.92829 0.95476 0.90049 0.91365 0.90356 0.77794 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.95 8.73 37.15 0.32 -0.63 16 2 C 0.19 1.33 1.24 -131.82 -0.16 1.17 16 3 C -0.14 -0.99 8.09 37.16 0.30 -0.69 16 4 C -0.16 -0.80 8.29 37.16 0.31 -0.49 16 5 N -0.36 -3.80 3.45 -48.32 -0.17 -3.97 16 6 C 0.01 0.06 10.67 -16.67 -0.18 -0.11 16 7 C 0.03 0.38 6.90 -83.86 -0.58 -0.20 16 8 N -0.66 -8.10 5.39 -14.39 -0.08 -8.18 16 9 C 0.71 10.89 8.28 -86.92 -0.72 10.17 16 10 O -0.58 -10.52 13.00 5.28 0.07 -10.45 16 11 N -0.62 -9.20 3.00 -177.90 -0.53 -9.74 16 12 C 0.13 2.15 6.61 -3.37 -0.02 2.12 16 13 C 0.05 0.94 5.47 -3.46 -0.02 0.92 16 14 N -0.53 -10.80 4.62 -235.47 -1.09 -11.89 16 15 C 0.19 4.85 4.72 -4.97 -0.02 4.83 16 16 C -0.51 -13.84 8.41 -34.44 -0.29 -14.13 16 17 H 0.06 1.70 7.13 -52.49 -0.37 1.33 16 18 C 0.06 1.54 5.46 -17.82 -0.10 1.45 16 19 N -0.90 -26.17 13.29 55.43 0.74 -25.43 16 20 Si 0.90 21.25 29.54 -169.99 -5.02 16.23 16 21 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 22 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 23 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 24 C 0.04 0.65 5.62 -3.70 -0.02 0.63 16 25 C 0.12 1.49 6.59 -3.60 -0.02 1.46 16 26 C 0.05 0.73 10.84 -17.23 -0.19 0.54 16 27 N -0.28 -3.82 11.65 30.70 0.36 -3.46 16 28 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.08 0.30 8.14 -51.93 -0.42 -0.13 16 30 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 31 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.07 0.32 8.14 -51.93 -0.42 -0.11 16 33 H 0.07 0.60 8.04 -51.93 -0.42 0.18 16 34 H 0.06 0.29 7.39 -51.93 -0.38 -0.10 16 35 H 0.08 0.25 8.14 -51.93 -0.42 -0.17 16 36 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 37 H 0.17 1.09 7.58 -52.49 -0.40 0.69 16 38 H 0.40 3.74 6.32 -40.82 -0.26 3.48 16 39 H 0.07 1.13 8.14 -51.93 -0.42 0.70 16 40 H 0.09 1.46 7.09 -51.93 -0.37 1.09 16 41 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 42 H 0.10 1.97 6.67 -51.93 -0.35 1.63 16 43 H -0.01 -0.24 8.12 -51.93 -0.42 -0.66 16 44 H 0.03 0.83 7.97 -51.93 -0.41 0.41 16 45 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 46 H 0.03 0.46 8.14 -51.93 -0.42 0.03 16 47 H 0.08 1.25 7.99 -51.93 -0.41 0.83 16 48 H 0.07 0.63 5.64 -51.93 -0.29 0.34 16 49 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 50 H 0.21 3.23 5.93 -52.49 -0.31 2.91 16 LS Contribution 394.92 15.07 5.95 5.95 Total: -1.00 -32.88 394.92 -9.35 -42.23 By element: Atomic # 1 Polarization: 9.85 SS G_CDS: -8.19 Total: 1.67 kcal Atomic # 6 Polarization: 8.43 SS G_CDS: -1.39 Total: 7.04 kcal Atomic # 7 Polarization: -61.90 SS G_CDS: -0.77 Total: -62.67 kcal Atomic # 8 Polarization: -10.52 SS G_CDS: 0.07 Total: -10.45 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.02 Total: 16.23 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -32.88 -9.35 -42.23 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000878828709.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.221 kcal (2) G-P(sol) polarization free energy of solvation -32.878 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.343 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.348 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.226 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.995 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds