Wall clock time and date at job start Tue Mar 31 2020 20:57:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52997 * 109.47665 * 2 1 4 4 C 1.53005 * 109.46817 * 240.00347 * 2 1 3 5 5 N 1.46501 * 109.47328 * 120.00490 * 2 1 3 6 6 C 1.35851 * 126.05873 * 74.99580 * 5 2 1 7 7 C 1.35723 * 107.55909 * 180.02562 * 6 5 2 8 8 N 1.40846 * 126.07367 * 180.02562 * 7 6 5 9 9 C 1.34773 * 120.00227 * 180.02562 * 8 7 6 10 10 O 1.21599 * 120.00275 * 354.78738 * 9 8 7 11 11 N 1.34780 * 120.00357 * 174.79272 * 9 8 7 12 12 C 1.47072 * 120.88380 * 184.71826 * 11 9 8 13 13 C 1.53697 * 108.27976 * 128.75408 * 12 11 9 14 14 N 1.46897 * 109.25911 * 54.07871 * 13 12 11 15 15 C 1.46900 * 111.00017 * 172.60983 * 14 13 12 16 16 C 1.50701 * 109.46908 * 294.30297 * 15 14 13 17 17 H 1.07992 * 120.00357 * 359.97438 * 16 15 14 18 18 C 1.37881 * 119.99759 * 179.97438 * 16 15 14 19 19 N 1.31516 * 119.99735 * 0.02562 * 18 16 15 20 20 Si 1.86792 * 120.00155 * 179.97438 * 18 16 15 21 21 H 1.48504 * 109.47085 * 59.99998 * 20 18 16 22 22 H 1.48493 * 109.47578 * 179.97438 * 20 18 16 23 23 H 1.48504 * 109.47145 * 300.00517 * 20 18 16 24 24 C 1.46898 * 111.26742 * 296.76035 * 14 13 12 25 25 C 1.47088 * 120.87941 * 4.98915 * 11 9 8 26 26 C 1.40232 * 107.85585 * 0.02562 * 7 6 5 27 27 N 1.30839 * 108.34023 * 359.97438 * 26 7 6 28 28 H 1.09004 * 109.46665 * 299.99534 * 1 2 3 29 29 H 1.09000 * 109.47250 * 59.99503 * 1 2 3 30 30 H 1.08998 * 109.47358 * 179.97438 * 1 2 3 31 31 H 1.08994 * 109.47578 * 180.02562 * 3 2 1 32 32 H 1.09000 * 109.47192 * 300.00533 * 3 2 1 33 33 H 1.09005 * 109.47117 * 60.00154 * 3 2 1 34 34 H 1.08998 * 109.46925 * 299.99981 * 4 2 1 35 35 H 1.08992 * 109.47298 * 59.99833 * 4 2 1 36 36 H 1.09001 * 109.47653 * 180.02562 * 4 2 1 37 37 H 1.08002 * 126.21857 * 0.02562 * 6 5 2 38 38 H 0.97004 * 120.00190 * 0.02562 * 8 7 6 39 39 H 1.09004 * 109.62588 * 248.52003 * 12 11 9 40 40 H 1.09004 * 109.63076 * 9.09416 * 12 11 9 41 41 H 1.08997 * 109.64274 * 294.07250 * 13 12 11 42 42 H 1.09002 * 109.42259 * 173.94938 * 13 12 11 43 43 H 1.08999 * 109.47145 * 54.30465 * 15 14 13 44 44 H 1.09002 * 109.46860 * 174.30577 * 15 14 13 45 45 H 0.97001 * 119.99552 * 180.02562 * 19 18 16 46 46 H 1.08997 * 109.49483 * 303.14086 * 24 14 13 47 47 H 1.08999 * 109.49257 * 183.06343 * 24 14 13 48 48 H 1.09004 * 109.62641 * 350.90455 * 25 11 9 49 49 H 1.09000 * 109.62547 * 111.47504 * 25 11 9 50 50 H 1.07999 * 125.83428 * 180.02562 * 26 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0399 -0.7212 -1.2493 5 7 2.0183 -0.6907 1.1961 6 6 2.0168 -2.0337 1.4006 7 6 2.5505 -2.2617 2.6275 8 7 2.7341 -3.5210 3.2310 9 6 3.2784 -3.6058 4.4610 10 8 3.6979 -2.6055 5.0107 11 7 3.3580 -4.7994 5.0820 12 6 3.8530 -4.9003 6.4632 13 6 2.8331 -5.7066 7.2831 14 7 2.5844 -6.9923 6.6175 15 6 1.7514 -7.8660 7.4547 16 6 2.5109 -8.2402 8.7014 17 1 3.5124 -7.8667 8.8561 18 6 1.9273 -9.0593 9.6444 19 7 0.7079 -9.5145 9.4557 20 14 2.8689 -9.5238 11.1894 21 1 3.2145 -8.2941 11.9469 22 1 2.0264 -10.4058 12.0363 23 1 4.1143 -10.2400 10.8135 24 6 1.9787 -6.7985 5.2934 25 6 2.9578 -6.0364 4.3941 26 6 2.8866 -1.0208 3.1875 27 7 2.5687 -0.0833 2.3320 28 1 -0.3633 0.5138 0.8901 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3634 -1.0276 -0.0005 31 1 3.1300 1.4424 -0.0005 32 1 1.6767 1.9563 -0.8899 33 1 1.6768 1.9563 0.8900 34 1 1.6765 -1.7488 -1.2494 35 1 1.6765 -0.2074 -2.1392 36 1 3.1299 -0.7217 -1.2493 37 1 1.6565 -2.7837 0.7120 38 1 2.4688 -4.3273 2.7615 39 1 4.8171 -5.4088 6.4704 40 1 3.9592 -3.9021 6.8880 41 1 1.8996 -5.1488 7.3573 42 1 3.2310 -5.8851 8.2821 43 1 0.8368 -7.3409 7.7303 44 1 1.4986 -8.7687 6.8986 45 1 0.2972 -10.0904 10.1194 46 1 1.0570 -6.2256 5.3952 47 1 1.7569 -7.7689 4.8493 48 1 2.4718 -5.7896 3.4501 49 1 3.8375 -6.6519 4.2062 50 1 3.3326 -0.8654 4.1588 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000878828709.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:57:14 Heat of formation + Delta-G solvation = 48.616887 kcal Electronic energy + Delta-G solvation = -29053.060799 eV Core-core repulsion = 25116.841097 eV Total energy + Delta-G solvation = -3936.219702 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -42.45678 -41.28014 -39.15584 -37.69026 -36.03710 -35.56683 -34.32961 -32.09189 -31.52293 -30.39561 -29.30408 -28.30731 -28.15914 -27.12808 -24.73214 -24.01976 -23.71167 -22.76962 -21.51205 -21.02573 -19.80433 -19.10803 -18.49153 -18.04625 -17.14846 -16.79601 -16.70970 -16.16552 -16.06623 -15.92523 -15.62612 -15.38282 -15.24216 -15.04995 -14.80580 -14.72996 -14.32271 -14.01483 -13.80124 -13.54402 -13.19977 -13.14431 -13.10355 -13.06142 -12.75457 -12.70027 -12.55683 -12.37473 -12.31143 -12.26888 -12.16452 -12.14122 -11.72252 -11.71690 -11.57310 -11.34604 -11.09177 -10.59777 -10.30098 -9.81905 -9.05425 -8.60647 -8.19511 -6.29007 0.86873 1.30779 1.43618 1.45972 1.53697 1.60497 1.71531 2.34622 2.41798 2.84230 3.12938 3.24521 3.50646 3.81699 3.87709 3.93350 3.95651 4.06000 4.11459 4.15097 4.27361 4.45823 4.51330 4.53704 4.60930 4.65231 4.71372 4.73734 4.75186 4.83781 4.86000 4.87784 4.88506 4.96933 5.03652 5.13073 5.15419 5.19252 5.25175 5.28420 5.33570 5.46604 5.65009 5.82702 5.89884 6.04901 6.18715 6.26870 6.59915 6.70974 6.86396 6.90379 7.40590 7.47175 8.91231 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.030733 B = 0.001982 C = 0.001935 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 910.846682 B =14123.274365 C =14470.418926 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.174 3.826 3 C -0.142 4.142 4 C -0.154 4.154 5 N -0.357 5.357 6 C 0.034 3.966 7 C 0.000 4.000 8 N -0.646 5.646 9 C 0.706 3.294 10 O -0.617 6.617 11 N -0.624 5.624 12 C 0.146 3.854 13 C 0.056 3.944 14 N -0.537 5.537 15 C 0.209 3.791 16 C -0.523 4.523 17 H 0.066 0.934 18 C 0.002 3.998 19 N -0.934 5.934 20 Si 0.968 3.032 21 H -0.270 1.270 22 H -0.286 1.286 23 H -0.267 1.267 24 C 0.037 3.963 25 C 0.125 3.875 26 C 0.025 3.975 27 N -0.310 5.310 28 H 0.044 0.956 29 H 0.103 0.897 30 H 0.070 0.930 31 H 0.050 0.950 32 H 0.100 0.900 33 H 0.051 0.949 34 H 0.078 0.922 35 H 0.104 0.896 36 H 0.055 0.945 37 H 0.214 0.786 38 H 0.420 0.580 39 H 0.082 0.918 40 H 0.087 0.913 41 H 0.009 0.991 42 H 0.080 0.920 43 H -0.042 1.042 44 H 0.012 0.988 45 H 0.264 0.736 46 H 0.018 0.982 47 H 0.091 0.909 48 H 0.111 0.889 49 H 0.091 0.909 50 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.847 15.753 -26.068 30.470 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.093 3.907 3 C -0.200 4.200 4 C -0.212 4.212 5 N -0.143 5.143 6 C -0.115 4.115 7 C -0.105 4.105 8 N -0.297 5.297 9 C 0.408 3.592 10 O -0.497 6.497 11 N -0.360 5.360 12 C 0.023 3.977 13 C -0.073 4.073 14 N -0.262 5.262 15 C 0.082 3.918 16 C -0.562 4.562 17 H 0.084 0.916 18 C -0.197 4.197 19 N -0.574 5.574 20 Si 0.792 3.208 21 H -0.195 1.195 22 H -0.211 1.211 23 H -0.191 1.191 24 C -0.092 4.092 25 C 0.003 3.997 26 C -0.161 4.161 27 N -0.133 5.133 28 H 0.063 0.937 29 H 0.122 0.878 30 H 0.089 0.911 31 H 0.070 0.930 32 H 0.119 0.881 33 H 0.070 0.930 34 H 0.097 0.903 35 H 0.123 0.877 36 H 0.074 0.926 37 H 0.231 0.769 38 H 0.260 0.740 39 H 0.100 0.900 40 H 0.105 0.895 41 H 0.027 0.973 42 H 0.098 0.902 43 H -0.025 1.025 44 H 0.030 0.970 45 H 0.072 0.928 46 H 0.037 0.963 47 H 0.110 0.890 48 H 0.129 0.871 49 H 0.109 0.891 50 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges 1.393 17.406 -25.992 31.312 hybrid contribution -0.819 -1.413 1.644 2.317 sum 0.575 15.993 -24.348 29.136 Atomic orbital electron populations 1.22264 0.91830 1.03665 1.03608 1.21106 0.95154 0.93612 0.80838 1.21912 1.01306 0.93294 1.03448 1.22248 1.01713 1.01803 0.95453 1.49055 1.47395 1.03900 1.13970 1.22226 1.04577 0.87755 0.96949 1.17661 1.11938 0.85577 0.95315 1.41774 1.64637 1.07114 1.16181 1.15801 0.78864 0.83312 0.81179 1.90768 1.55693 1.35842 1.67423 1.47374 1.68054 1.05346 1.15219 1.21618 0.96538 1.00248 0.79293 1.22376 0.97069 0.89200 0.98635 1.62001 1.48034 1.12903 1.03268 1.19372 0.89886 0.90674 0.91822 1.21446 1.01393 1.29456 1.03864 0.91602 1.25894 0.95856 0.95991 1.01919 1.70074 1.15289 1.35119 1.36960 0.85457 0.78454 0.78287 0.78555 1.19457 1.21108 1.19149 1.22536 0.95239 1.00578 0.90879 1.21912 0.99031 0.84180 0.94619 1.24267 1.01735 0.89727 1.00372 1.77283 1.18332 1.22578 0.95079 0.93659 0.87833 0.91099 0.93034 0.88101 0.93024 0.90290 0.87734 0.92568 0.76935 0.74004 0.90022 0.89482 0.97292 0.90176 1.02479 0.96969 0.92754 0.96345 0.89030 0.87087 0.89075 0.80240 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.38 8.73 71.98 0.63 -0.76 16 2 C 0.17 2.04 1.24 3.60 0.00 2.04 16 3 C -0.14 -1.76 8.09 71.98 0.58 -1.18 16 4 C -0.15 -0.94 8.29 71.98 0.60 -0.34 16 5 N -0.36 -6.85 3.45 -306.79 -1.06 -7.91 16 6 C 0.03 0.57 10.67 83.49 0.89 1.46 16 7 C 0.00 0.00 6.90 37.59 0.26 0.26 16 8 N -0.65 -14.55 5.39 -317.71 -1.71 -16.26 16 9 C 0.71 21.14 8.28 179.05 1.48 22.62 16 10 O -0.62 -22.76 13.00 -4.03 -0.05 -22.81 16 11 N -0.62 -17.76 3.00 -835.01 -2.51 -20.27 16 12 C 0.15 4.69 6.61 86.51 0.57 5.27 16 13 C 0.06 2.18 5.47 86.54 0.47 2.66 16 14 N -0.54 -21.93 4.62 -898.90 -4.15 -26.08 16 15 C 0.21 10.78 4.72 85.56 0.40 11.18 16 16 C -0.52 -28.94 8.41 25.60 0.22 -28.72 16 17 H 0.07 3.54 7.13 -2.91 -0.02 3.52 16 18 C 0.00 0.08 5.46 84.66 0.46 0.55 16 19 N -0.93 -55.54 13.29 21.45 0.28 -55.25 16 20 Si 0.97 43.82 29.54 68.60 2.03 45.84 16 21 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 22 H -0.29 -12.71 7.11 99.48 0.71 -12.01 16 23 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 24 C 0.04 1.15 5.62 86.38 0.49 1.64 16 25 C 0.13 2.86 6.59 86.35 0.57 3.42 16 26 C 0.03 0.75 10.84 85.33 0.92 1.67 16 27 N -0.31 -8.48 11.65 -56.78 -0.66 -9.14 16 28 H 0.04 0.61 8.14 -2.38 -0.02 0.59 16 29 H 0.10 0.38 8.14 -2.39 -0.02 0.36 16 30 H 0.07 0.55 8.14 -2.39 -0.02 0.53 16 31 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 32 H 0.10 0.62 8.14 -2.39 -0.02 0.60 16 33 H 0.05 0.86 8.04 -2.38 -0.02 0.84 16 34 H 0.08 0.30 7.39 -2.39 -0.02 0.28 16 35 H 0.10 0.16 8.14 -2.39 -0.02 0.15 16 36 H 0.06 0.50 8.14 -2.39 -0.02 0.48 16 37 H 0.21 1.61 7.58 -2.91 -0.02 1.58 16 38 H 0.42 6.26 6.32 -92.71 -0.59 5.68 16 39 H 0.08 2.48 8.14 -2.38 -0.02 2.46 16 40 H 0.09 2.87 7.09 -2.39 -0.02 2.85 16 41 H 0.01 0.37 8.14 -2.39 -0.02 0.35 16 42 H 0.08 3.35 6.67 -2.39 -0.02 3.33 16 43 H -0.04 -2.44 8.12 -2.39 -0.02 -2.46 16 44 H 0.01 0.67 7.97 -2.39 -0.02 0.65 16 45 H 0.26 14.83 8.31 -92.71 -0.77 14.06 16 46 H 0.02 0.61 8.14 -2.39 -0.02 0.59 16 47 H 0.09 2.69 7.99 -2.39 -0.02 2.67 16 48 H 0.11 1.59 5.64 -2.38 -0.01 1.58 16 49 H 0.09 1.94 8.14 -2.39 -0.02 1.92 16 50 H 0.18 6.17 5.93 -2.91 -0.02 6.15 16 Total: -1.00 -75.67 394.92 1.07 -74.61 By element: Atomic # 1 Polarization: 15.15 SS G_CDS: 0.35 Total: 15.50 kcal Atomic # 6 Polarization: 13.22 SS G_CDS: 8.55 Total: 21.77 kcal Atomic # 7 Polarization: -125.10 SS G_CDS: -9.81 Total: -134.91 kcal Atomic # 8 Polarization: -22.76 SS G_CDS: -0.05 Total: -22.81 kcal Atomic # 14 Polarization: 43.82 SS G_CDS: 2.03 Total: 45.84 kcal Total: -75.67 1.07 -74.61 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000878828709.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.225 kcal (2) G-P(sol) polarization free energy of solvation -75.673 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.552 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.065 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.608 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.617 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds