Wall clock time and date at job start Tue Mar 31 2020 19:48:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52995 * 109.46816 * 2 1 4 4 N 1.46901 * 109.46487 * 304.97319 * 3 2 1 5 5 C 1.53046 * 109.46069 * 185.00135 * 3 2 1 6 6 C 1.53190 * 109.31549 * 178.61574 * 5 3 2 7 7 N 1.46922 * 108.77708 * 54.63314 * 6 5 3 8 8 C 1.34776 * 120.63141 * 126.36574 * 7 6 5 9 9 O 1.21588 * 120.00126 * 185.22844 * 8 7 6 10 10 N 1.34776 * 119.99873 * 5.23247 * 8 7 6 11 11 C 1.40201 * 120.00042 * 174.87493 * 10 8 7 12 12 C 1.40400 * 125.97088 * 0.24378 * 11 10 8 13 13 C 1.35246 * 107.86750 * 180.15438 * 12 11 10 14 14 C 1.50694 * 126.07325 * 179.88471 * 13 12 11 15 15 N 1.34967 * 107.85746 * 359.62040 * 13 12 11 16 16 C 1.46497 * 125.97815 * 180.22246 * 15 13 12 17 17 C 1.50695 * 109.47259 * 90.00177 * 16 15 13 18 18 H 1.07995 * 119.99950 * 359.97438 * 17 16 15 19 19 C 1.37875 * 119.99917 * 180.02562 * 17 16 15 20 20 N 1.31518 * 119.99885 * 359.97438 * 19 17 16 21 21 Si 1.86796 * 120.00160 * 179.97438 * 19 17 16 22 22 H 1.48506 * 109.47203 * 89.99933 * 21 19 17 23 23 H 1.48506 * 109.47367 * 209.99987 * 21 19 17 24 24 H 1.48506 * 109.47179 * 330.00019 * 21 19 17 25 25 N 1.31206 * 125.97108 * 179.97438 * 11 10 8 26 26 C 1.46934 * 118.74057 * 306.64755 * 7 6 5 27 27 C 1.52765 * 109.00796 * 53.30485 * 26 7 6 28 28 H 1.09007 * 109.47252 * 179.97438 * 1 2 3 29 29 H 1.08994 * 109.46923 * 299.99634 * 1 2 3 30 30 H 1.09004 * 109.47412 * 60.00144 * 1 2 3 31 31 H 1.09003 * 109.46964 * 240.00528 * 2 1 3 32 32 H 1.08994 * 109.47306 * 120.00417 * 2 1 3 33 33 H 1.00901 * 110.99794 * 60.02418 * 4 3 2 34 34 H 1.00897 * 111.00488 * 183.97884 * 4 3 2 35 35 H 1.09004 * 109.49419 * 58.66540 * 5 3 2 36 36 H 1.08994 * 109.49956 * 298.56868 * 5 3 2 37 37 H 1.09004 * 109.58479 * 294.84726 * 6 5 3 38 38 H 1.09001 * 109.70437 * 174.48998 * 6 5 3 39 39 H 0.97001 * 119.99839 * 354.86609 * 10 8 7 40 40 H 1.07998 * 126.06798 * 0.05797 * 12 11 10 41 41 H 1.08999 * 109.47125 * 269.69075 * 14 13 12 42 42 H 1.09004 * 109.47483 * 149.68924 * 14 13 12 43 43 H 1.09006 * 109.47027 * 29.68730 * 14 13 12 44 44 H 1.09005 * 109.46940 * 209.99930 * 16 15 13 45 45 H 1.09004 * 109.46557 * 329.99448 * 16 15 13 46 46 H 0.97009 * 119.99773 * 180.02562 * 20 19 17 47 47 H 1.08994 * 109.58608 * 173.14265 * 26 7 6 48 48 H 1.09000 * 109.57932 * 293.56386 * 26 7 6 49 49 H 1.08995 * 109.56403 * 185.55754 * 27 26 7 50 50 H 1.08998 * 109.38788 * 65.51503 * 27 26 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 1.4545 2.1686 -1.1349 5 6 3.5652 1.4441 -0.1258 6 6 4.0692 2.8903 -0.1603 7 7 3.5607 3.5967 1.0234 8 6 4.4037 4.2464 1.8502 9 8 3.9841 4.7462 2.8762 10 7 5.7117 4.3421 1.5399 11 6 6.5685 5.1080 2.3429 12 6 6.2010 5.8198 3.4959 13 6 7.3083 6.4282 3.9785 14 6 7.3778 7.3015 5.2046 15 7 8.3412 6.1095 3.1704 16 6 9.7281 6.5530 3.3308 17 6 10.4766 5.5627 4.1851 18 1 9.9698 4.6903 4.5704 19 6 11.8082 5.7708 4.4757 20 7 12.4253 6.8335 4.0068 21 14 12.7360 4.5436 5.5352 22 1 13.3441 3.5019 4.6689 23 1 13.8052 5.2479 6.2875 24 1 11.7961 3.9053 6.4915 25 7 7.8549 5.2807 2.1511 26 6 2.1162 3.5762 1.2919 27 6 1.6335 2.1269 1.3071 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 1.8933 -0.5138 -0.8901 32 1 1.8933 -0.5139 0.8899 33 1 0.4474 2.1817 -1.0751 34 1 1.8254 3.1050 -1.1952 35 1 3.8549 0.9359 -1.0456 36 1 4.0013 0.9272 0.7289 37 1 3.7069 3.3821 -1.0630 38 1 5.1592 2.8999 -0.1513 39 1 6.0603 3.8809 0.7609 40 1 5.2097 5.8734 3.9210 41 1 7.1976 8.3389 4.9225 42 1 8.3655 7.2145 5.6573 43 1 6.6204 6.9830 5.9210 44 1 10.2034 6.6209 2.3521 45 1 9.7433 7.5316 3.8107 46 1 13.3623 6.9797 4.2110 47 1 1.9180 4.0361 2.2600 48 1 1.5915 4.1252 0.5100 49 1 0.5483 2.1047 1.4072 50 1 2.0873 1.6032 2.1484 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000883550440.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:48:55 Heat of formation + Delta-G solvation = 52.850815 kcal Electronic energy + Delta-G solvation = -29360.372998 eV Core-core repulsion = 25424.336893 eV Total energy + Delta-G solvation = -3936.036105 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 1.70 seconds Orbital eigenvalues (eV) -41.08799 -40.28746 -38.84198 -35.33171 -34.92274 -33.36880 -31.73002 -31.58731 -31.11522 -30.74409 -29.82065 -26.71357 -26.31317 -25.78216 -23.96612 -23.00049 -22.47272 -21.05802 -19.84648 -19.64656 -18.72773 -17.75158 -16.69967 -16.61771 -16.34383 -15.93847 -15.62053 -15.32555 -14.85389 -14.64800 -14.45101 -14.30334 -14.23827 -13.85092 -13.68476 -13.28352 -13.14491 -12.91342 -12.53236 -12.46248 -12.29303 -12.24816 -12.10386 -11.71517 -11.61829 -11.56272 -11.39206 -11.35469 -11.06232 -10.96484 -10.83339 -10.78241 -10.43112 -10.24060 -9.98379 -9.63565 -9.51321 -9.09651 -8.83911 -8.63568 -7.89541 -7.38516 -6.24496 -4.32134 2.29865 2.64454 3.07969 3.22171 3.28339 3.32048 3.39974 3.82791 4.03249 4.08909 4.26578 4.31023 4.32859 4.51002 4.67783 4.81953 4.84277 4.98723 5.04711 5.07739 5.09145 5.13886 5.39626 5.43182 5.47653 5.53792 5.59603 5.63919 5.69032 5.73219 5.75098 5.84783 5.96621 5.97605 6.12266 6.14619 6.31600 6.51118 6.62252 6.65556 6.79034 6.94687 7.02315 7.04717 7.10463 7.53384 7.68404 7.87722 7.90807 8.09071 8.56384 8.68965 8.77421 9.34163 10.82552 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.020785 B = 0.002258 C = 0.002158 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1346.799919 B =12398.141370 C =12970.644429 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.109 4.109 3 C 0.122 3.878 4 N -0.839 5.839 5 C -0.122 4.122 6 C 0.106 3.894 7 N -0.627 5.627 8 C 0.717 3.283 9 O -0.565 6.565 10 N -0.644 5.644 11 C 0.281 3.719 12 C -0.289 4.289 13 C 0.092 3.908 14 C -0.088 4.088 15 N -0.318 5.318 16 C 0.259 3.741 17 C -0.535 4.535 18 H 0.064 0.936 19 C 0.065 3.935 20 N -0.892 5.892 21 Si 0.906 3.094 22 H -0.278 1.278 23 H -0.283 1.283 24 H -0.272 1.272 25 N -0.324 5.324 26 C 0.130 3.870 27 C -0.166 4.166 28 H 0.053 0.947 29 H 0.053 0.947 30 H 0.060 0.940 31 H 0.070 0.930 32 H 0.064 0.936 33 H 0.340 0.660 34 H 0.340 0.660 35 H 0.085 0.915 36 H 0.073 0.927 37 H 0.076 0.924 38 H 0.080 0.920 39 H 0.405 0.595 40 H 0.159 0.841 41 H 0.070 0.930 42 H 0.082 0.918 43 H 0.075 0.925 44 H 0.052 0.948 45 H 0.054 0.946 46 H 0.268 0.732 47 H 0.098 0.902 48 H 0.061 0.939 49 H 0.077 0.923 50 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.135 -9.014 -8.644 26.291 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.147 4.147 3 C 0.029 3.971 4 N -0.372 5.372 5 C -0.161 4.161 6 C -0.017 4.017 7 N -0.366 5.366 8 C 0.418 3.582 9 O -0.440 6.440 10 N -0.296 5.296 11 C 0.028 3.972 12 C -0.320 4.320 13 C -0.040 4.040 14 C -0.147 4.147 15 N -0.101 5.101 16 C 0.141 3.859 17 C -0.574 4.574 18 H 0.082 0.918 19 C -0.138 4.138 20 N -0.530 5.530 21 Si 0.733 3.267 22 H -0.204 1.204 23 H -0.209 1.209 24 H -0.197 1.197 25 N -0.155 5.155 26 C 0.006 3.994 27 C -0.207 4.207 28 H 0.073 0.927 29 H 0.072 0.928 30 H 0.079 0.921 31 H 0.088 0.912 32 H 0.083 0.917 33 H 0.155 0.845 34 H 0.155 0.845 35 H 0.103 0.897 36 H 0.091 0.909 37 H 0.094 0.906 38 H 0.099 0.901 39 H 0.242 0.758 40 H 0.177 0.823 41 H 0.089 0.911 42 H 0.101 0.899 43 H 0.093 0.907 44 H 0.070 0.930 45 H 0.072 0.928 46 H 0.077 0.923 47 H 0.116 0.884 48 H 0.079 0.921 49 H 0.096 0.904 50 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -21.804 -9.326 -9.100 25.400 hybrid contribution -0.133 -0.178 1.214 1.234 sum -21.937 -9.503 -7.886 25.174 Atomic orbital electron populations 1.21829 0.95921 1.01830 1.01772 1.21531 0.96012 0.94912 1.02288 1.20729 0.94100 0.94068 0.88216 1.59027 1.11259 1.22211 1.44682 1.21971 0.94436 0.96283 1.03397 1.21706 0.99250 0.92686 0.88106 1.47218 1.06849 1.55704 1.26858 1.15515 0.80214 0.79468 0.83002 1.90859 1.76051 1.52255 1.24845 1.41598 1.06147 1.51605 1.30203 1.18681 0.89237 0.96219 0.93072 1.21217 1.00335 1.09752 1.00716 1.21050 0.88017 0.99582 0.95347 1.20371 1.04036 0.97298 0.92952 1.48965 1.09257 1.34580 1.17256 1.19673 0.71320 0.95775 0.99113 1.21332 0.95425 1.08605 1.32018 0.91760 1.24931 0.97080 0.95797 0.96019 1.69927 1.11588 1.26784 1.44670 0.86361 0.79331 0.80827 0.80200 1.20356 1.20881 1.19663 1.77242 1.07464 1.17030 1.13726 1.21348 0.78553 0.96367 1.03098 1.22725 1.01551 0.96550 0.99849 0.92746 0.92775 0.92102 0.91175 0.91741 0.84530 0.84498 0.89695 0.90858 0.90629 0.90141 0.75796 0.82345 0.91124 0.89932 0.90654 0.93039 0.92809 0.92280 0.88356 0.92123 0.90419 0.90741 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.80 9.21 37.16 0.34 -0.45 16 2 C -0.11 -0.66 5.16 -26.73 -0.14 -0.80 16 3 C 0.12 0.77 0.70 -131.56 -0.09 0.67 16 4 N -0.84 -4.75 8.58 0.78 0.01 -4.74 16 5 C -0.12 -0.87 5.09 -26.61 -0.14 -1.00 16 6 C 0.11 0.85 5.95 -3.71 -0.02 0.83 16 7 N -0.63 -6.70 2.98 -178.76 -0.53 -7.23 16 8 C 0.72 11.04 8.26 -86.92 -0.72 10.32 16 9 O -0.56 -10.50 12.91 5.29 0.07 -10.44 16 10 N -0.64 -10.49 5.36 -15.51 -0.08 -10.57 16 11 C 0.28 5.88 8.11 -154.36 -1.25 4.63 16 12 C -0.29 -6.12 9.52 -39.83 -0.38 -6.50 16 13 C 0.09 1.97 6.92 -82.28 -0.57 1.40 16 14 C -0.09 -1.54 9.89 36.00 0.36 -1.18 16 15 N -0.32 -7.65 3.59 -58.33 -0.21 -7.86 16 16 C 0.26 6.69 5.81 -5.20 -0.03 6.66 16 17 C -0.54 -14.84 9.39 -34.44 -0.32 -15.16 16 18 H 0.06 1.84 7.81 -52.49 -0.41 1.43 16 19 C 0.06 1.78 5.46 -17.82 -0.10 1.68 16 20 N -0.89 -25.13 13.29 55.43 0.74 -24.39 16 21 Si 0.91 21.21 29.54 -169.99 -5.02 16.19 16 22 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 23 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 24 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 25 N -0.32 -7.60 12.59 31.44 0.40 -7.20 16 26 C 0.13 1.14 5.98 -3.93 -0.02 1.12 16 27 C -0.17 -1.17 4.82 -26.83 -0.13 -1.30 16 28 H 0.05 0.27 8.14 -51.93 -0.42 -0.15 16 29 H 0.05 0.27 6.53 -51.93 -0.34 -0.07 16 30 H 0.06 0.29 6.61 -51.93 -0.34 -0.05 16 31 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 33 H 0.34 1.61 7.04 -39.29 -0.28 1.34 16 34 H 0.34 1.95 5.60 -39.29 -0.22 1.73 16 35 H 0.08 0.56 8.14 -51.93 -0.42 0.13 16 36 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 37 H 0.08 0.52 6.83 -51.93 -0.35 0.16 16 38 H 0.08 0.64 5.64 -51.93 -0.29 0.35 16 39 H 0.40 5.46 6.31 -40.82 -0.26 5.20 16 40 H 0.16 3.30 5.93 -52.49 -0.31 2.99 16 41 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 42 H 0.08 1.54 7.71 -51.93 -0.40 1.14 16 43 H 0.07 1.14 8.14 -51.93 -0.42 0.71 16 44 H 0.05 1.42 8.14 -51.93 -0.42 0.99 16 45 H 0.05 1.37 7.65 -51.93 -0.40 0.98 16 46 H 0.27 7.10 8.31 -40.82 -0.34 6.77 16 47 H 0.10 1.07 6.99 -51.93 -0.36 0.70 16 48 H 0.06 0.43 7.03 -51.93 -0.37 0.07 16 49 H 0.08 0.45 6.50 -51.93 -0.34 0.11 16 50 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 LS Contribution 386.18 15.07 5.82 5.82 Total: -1.00 -32.38 386.18 -9.64 -42.02 By element: Atomic # 1 Polarization: 15.10 SS G_CDS: -7.61 Total: 7.49 kcal Atomic # 6 Polarization: 4.13 SS G_CDS: -3.21 Total: 0.92 kcal Atomic # 7 Polarization: -62.32 SS G_CDS: 0.31 Total: -62.01 kcal Atomic # 8 Polarization: -10.50 SS G_CDS: 0.07 Total: -10.44 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.02 Total: 16.19 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -32.38 -9.64 -42.02 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000883550440.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.870 kcal (2) G-P(sol) polarization free energy of solvation -32.381 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.489 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.639 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.019 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.851 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.70 seconds