Wall clock time and date at job start Tue Mar 31 2020 19:48:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52995 * 109.46816 * 2 1 4 4 N 1.46901 * 109.46487 * 304.97319 * 3 2 1 5 5 C 1.53046 * 109.46069 * 185.00135 * 3 2 1 6 6 C 1.53190 * 109.31549 * 178.61574 * 5 3 2 7 7 N 1.46922 * 108.77708 * 54.63314 * 6 5 3 8 8 C 1.34776 * 120.63141 * 126.36574 * 7 6 5 9 9 O 1.21588 * 120.00126 * 185.22844 * 8 7 6 10 10 N 1.34776 * 119.99873 * 5.23247 * 8 7 6 11 11 C 1.40201 * 120.00042 * 174.87493 * 10 8 7 12 12 C 1.40400 * 125.97088 * 0.24378 * 11 10 8 13 13 C 1.35246 * 107.86750 * 180.15438 * 12 11 10 14 14 C 1.50694 * 126.07325 * 179.88471 * 13 12 11 15 15 N 1.34967 * 107.85746 * 359.62040 * 13 12 11 16 16 C 1.46497 * 125.97815 * 180.22246 * 15 13 12 17 17 C 1.50695 * 109.47259 * 90.00177 * 16 15 13 18 18 H 1.07995 * 119.99950 * 359.97438 * 17 16 15 19 19 C 1.37875 * 119.99917 * 180.02562 * 17 16 15 20 20 N 1.31518 * 119.99885 * 359.97438 * 19 17 16 21 21 Si 1.86796 * 120.00160 * 179.97438 * 19 17 16 22 22 H 1.48506 * 109.47203 * 89.99933 * 21 19 17 23 23 H 1.48506 * 109.47367 * 209.99987 * 21 19 17 24 24 H 1.48506 * 109.47179 * 330.00019 * 21 19 17 25 25 N 1.31206 * 125.97108 * 179.97438 * 11 10 8 26 26 C 1.46934 * 118.74057 * 306.64755 * 7 6 5 27 27 C 1.52765 * 109.00796 * 53.30485 * 26 7 6 28 28 H 1.09007 * 109.47252 * 179.97438 * 1 2 3 29 29 H 1.08994 * 109.46923 * 299.99634 * 1 2 3 30 30 H 1.09004 * 109.47412 * 60.00144 * 1 2 3 31 31 H 1.09003 * 109.46964 * 240.00528 * 2 1 3 32 32 H 1.08994 * 109.47306 * 120.00417 * 2 1 3 33 33 H 1.00901 * 110.99794 * 60.02418 * 4 3 2 34 34 H 1.00897 * 111.00488 * 183.97884 * 4 3 2 35 35 H 1.09004 * 109.49419 * 58.66540 * 5 3 2 36 36 H 1.08994 * 109.49956 * 298.56868 * 5 3 2 37 37 H 1.09004 * 109.58479 * 294.84726 * 6 5 3 38 38 H 1.09001 * 109.70437 * 174.48998 * 6 5 3 39 39 H 0.97001 * 119.99839 * 354.86609 * 10 8 7 40 40 H 1.07998 * 126.06798 * 0.05797 * 12 11 10 41 41 H 1.08999 * 109.47125 * 269.69075 * 14 13 12 42 42 H 1.09004 * 109.47483 * 149.68924 * 14 13 12 43 43 H 1.09006 * 109.47027 * 29.68730 * 14 13 12 44 44 H 1.09005 * 109.46940 * 209.99930 * 16 15 13 45 45 H 1.09004 * 109.46557 * 329.99448 * 16 15 13 46 46 H 0.97009 * 119.99773 * 180.02562 * 20 19 17 47 47 H 1.08994 * 109.58608 * 173.14265 * 26 7 6 48 48 H 1.09000 * 109.57932 * 293.56386 * 26 7 6 49 49 H 1.08995 * 109.56403 * 185.55754 * 27 26 7 50 50 H 1.08998 * 109.38788 * 65.51503 * 27 26 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 1.4545 2.1686 -1.1349 5 6 3.5652 1.4441 -0.1258 6 6 4.0692 2.8903 -0.1603 7 7 3.5607 3.5967 1.0234 8 6 4.4037 4.2464 1.8502 9 8 3.9841 4.7462 2.8762 10 7 5.7117 4.3421 1.5399 11 6 6.5685 5.1080 2.3429 12 6 6.2010 5.8198 3.4959 13 6 7.3083 6.4282 3.9785 14 6 7.3778 7.3015 5.2046 15 7 8.3412 6.1095 3.1704 16 6 9.7281 6.5530 3.3308 17 6 10.4766 5.5627 4.1851 18 1 9.9698 4.6903 4.5704 19 6 11.8082 5.7708 4.4757 20 7 12.4253 6.8335 4.0068 21 14 12.7360 4.5436 5.5352 22 1 13.3441 3.5019 4.6689 23 1 13.8052 5.2479 6.2875 24 1 11.7961 3.9053 6.4915 25 7 7.8549 5.2807 2.1511 26 6 2.1162 3.5762 1.2919 27 6 1.6335 2.1269 1.3071 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 1.8933 -0.5138 -0.8901 32 1 1.8933 -0.5139 0.8899 33 1 0.4474 2.1817 -1.0751 34 1 1.8254 3.1050 -1.1952 35 1 3.8549 0.9359 -1.0456 36 1 4.0013 0.9272 0.7289 37 1 3.7069 3.3821 -1.0630 38 1 5.1592 2.8999 -0.1513 39 1 6.0603 3.8809 0.7609 40 1 5.2097 5.8734 3.9210 41 1 7.1976 8.3389 4.9225 42 1 8.3655 7.2145 5.6573 43 1 6.6204 6.9830 5.9210 44 1 10.2034 6.6209 2.3521 45 1 9.7433 7.5316 3.8107 46 1 13.3623 6.9797 4.2110 47 1 1.9180 4.0361 2.2600 48 1 1.5915 4.1252 0.5100 49 1 0.5483 2.1047 1.4072 50 1 2.0873 1.6032 2.1484 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000883550440.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:48:54 Heat of formation + Delta-G solvation = 32.099563 kcal Electronic energy + Delta-G solvation = -29361.272840 eV Core-core repulsion = 25424.336893 eV Total energy + Delta-G solvation = -3936.935947 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -42.41848 -41.54444 -39.80800 -36.42673 -36.20113 -35.28976 -33.13082 -32.63777 -32.23163 -31.77866 -30.53595 -28.55789 -27.87257 -26.56275 -25.17440 -24.38842 -23.34942 -22.20357 -21.30461 -20.81607 -19.71410 -18.87180 -18.72398 -17.79454 -17.23770 -17.13625 -16.94104 -16.44276 -16.15901 -15.83739 -15.76371 -15.40199 -15.06783 -14.90618 -14.66822 -14.43124 -14.31404 -13.92718 -13.75263 -13.68962 -13.63257 -13.52716 -13.16447 -13.10152 -12.83275 -12.75906 -12.69300 -12.31327 -12.26239 -12.18258 -12.10038 -11.82405 -11.58533 -11.51298 -11.40598 -11.36742 -11.03026 -10.73825 -9.86369 -9.57359 -9.49906 -9.06977 -8.32626 -6.50408 0.98932 1.08045 1.37499 1.38255 1.49765 1.62453 1.97949 2.33227 2.34926 2.75979 2.96641 3.56551 3.66652 3.70729 3.84810 3.92785 4.02110 4.13290 4.20146 4.28804 4.42053 4.45918 4.48246 4.53204 4.60839 4.73325 4.76688 4.78576 4.87120 4.88081 4.94114 5.00752 5.01339 5.03973 5.07058 5.14145 5.19190 5.21130 5.24242 5.37112 5.50813 5.53685 5.57430 5.71727 5.81335 5.95121 6.26819 6.32396 6.56067 6.63264 6.64312 7.06671 7.20435 7.33829 8.73006 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.020785 B = 0.002258 C = 0.002158 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1346.799919 B =12398.141370 C =12970.644429 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.108 4.108 3 C 0.128 3.872 4 N -0.837 5.837 5 C -0.120 4.120 6 C 0.102 3.898 7 N -0.614 5.614 8 C 0.712 3.288 9 O -0.600 6.600 10 N -0.637 5.637 11 C 0.291 3.709 12 C -0.298 4.298 13 C 0.088 3.912 14 C -0.085 4.085 15 N -0.343 5.343 16 C 0.276 3.724 17 C -0.553 4.553 18 H 0.048 0.952 19 C 0.023 3.977 20 N -0.917 5.917 21 Si 0.971 3.029 22 H -0.274 1.274 23 H -0.270 1.270 24 H -0.271 1.271 25 N -0.360 5.360 26 C 0.126 3.874 27 C -0.158 4.158 28 H 0.055 0.945 29 H 0.056 0.944 30 H 0.065 0.935 31 H 0.067 0.933 32 H 0.059 0.941 33 H 0.348 0.652 34 H 0.341 0.659 35 H 0.095 0.905 36 H 0.062 0.938 37 H 0.096 0.904 38 H 0.080 0.920 39 H 0.417 0.583 40 H 0.164 0.836 41 H 0.093 0.907 42 H 0.067 0.933 43 H 0.101 0.899 44 H 0.025 0.975 45 H 0.053 0.947 46 H 0.274 0.726 47 H 0.077 0.923 48 H 0.085 0.915 49 H 0.095 0.905 50 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.607 -10.011 -9.022 28.056 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.146 4.146 3 C 0.035 3.965 4 N -0.371 5.371 5 C -0.158 4.158 6 C -0.021 4.021 7 N -0.351 5.351 8 C 0.413 3.587 9 O -0.478 6.478 10 N -0.291 5.291 11 C 0.036 3.964 12 C -0.329 4.329 13 C -0.042 4.042 14 C -0.143 4.143 15 N -0.125 5.125 16 C 0.157 3.843 17 C -0.591 4.591 18 H 0.066 0.934 19 C -0.178 4.178 20 N -0.555 5.555 21 Si 0.795 3.205 22 H -0.200 1.200 23 H -0.194 1.194 24 H -0.195 1.195 25 N -0.190 5.190 26 C 0.004 3.996 27 C -0.198 4.198 28 H 0.074 0.926 29 H 0.075 0.925 30 H 0.084 0.916 31 H 0.086 0.914 32 H 0.078 0.922 33 H 0.164 0.836 34 H 0.156 0.844 35 H 0.114 0.886 36 H 0.080 0.920 37 H 0.114 0.886 38 H 0.098 0.902 39 H 0.257 0.743 40 H 0.182 0.818 41 H 0.112 0.888 42 H 0.086 0.914 43 H 0.119 0.881 44 H 0.043 0.957 45 H 0.070 0.930 46 H 0.083 0.917 47 H 0.095 0.905 48 H 0.103 0.897 49 H 0.114 0.886 50 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -23.326 -10.352 -9.528 27.240 hybrid contribution 0.178 0.100 1.248 1.265 sum -23.148 -10.252 -8.280 26.636 Atomic orbital electron populations 1.21811 0.95072 1.02091 1.02142 1.21504 0.96733 0.94425 1.01945 1.20640 0.93528 0.94379 0.87973 1.59007 1.11889 1.22194 1.43987 1.21956 0.95053 0.95351 1.03466 1.21944 0.99392 0.93239 0.87488 1.47292 1.07052 1.54267 1.26497 1.15726 0.80040 0.79712 0.83218 1.90823 1.76495 1.53902 1.26547 1.41612 1.06179 1.51176 1.30122 1.18962 0.88924 0.95415 0.93083 1.21374 1.00405 1.10079 1.01082 1.21731 0.87320 0.99313 0.95830 1.20496 1.04054 0.97996 0.91759 1.48771 1.09041 1.36122 1.18582 1.19245 0.72397 0.95459 0.97203 1.21428 0.96203 1.08606 1.32846 0.93356 1.25727 0.97650 0.97494 0.96965 1.70004 1.12144 1.28050 1.45324 0.85366 0.78112 0.78544 0.78522 1.19979 1.19446 1.19520 1.77161 1.08797 1.18464 1.14614 1.21538 0.77387 0.97830 1.02884 1.22678 1.02444 0.94985 0.99717 0.92635 0.92502 0.91562 0.91424 0.92225 0.83642 0.84374 0.88629 0.91959 0.88582 0.90205 0.74311 0.81825 0.88810 0.91370 0.88066 0.95699 0.92967 0.91724 0.90453 0.89712 0.88625 0.92398 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.23 9.21 71.98 0.66 -0.57 16 2 C -0.11 -1.09 5.16 30.59 0.16 -0.94 16 3 C 0.13 1.34 0.70 3.55 0.00 1.34 16 4 N -0.84 -7.13 8.58 -151.45 -1.30 -8.43 16 5 C -0.12 -1.49 5.09 30.67 0.16 -1.33 16 6 C 0.10 1.45 5.95 86.36 0.51 1.96 16 7 N -0.61 -12.40 2.98 -837.73 -2.50 -14.89 16 8 C 0.71 21.65 8.26 179.05 1.48 23.13 16 9 O -0.60 -22.34 12.91 -3.99 -0.05 -22.39 16 10 N -0.64 -20.69 5.36 -321.23 -1.72 -22.41 16 11 C 0.29 12.32 8.11 133.31 1.08 13.40 16 12 C -0.30 -12.71 9.52 22.11 0.21 -12.50 16 13 C 0.09 3.84 6.92 41.38 0.29 4.12 16 14 C -0.09 -2.91 9.89 71.23 0.70 -2.21 16 15 N -0.34 -16.94 3.59 -338.45 -1.22 -18.15 16 16 C 0.28 14.77 5.81 85.63 0.50 15.26 16 17 C -0.55 -31.32 9.39 25.60 0.24 -31.08 16 18 H 0.05 2.84 7.81 -2.91 -0.02 2.82 16 19 C 0.02 1.25 5.46 84.65 0.46 1.71 16 20 N -0.92 -52.02 13.29 21.45 0.28 -51.73 16 21 Si 0.97 43.41 29.54 68.60 2.03 45.44 16 22 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 23 H -0.27 -11.42 7.11 99.48 0.71 -10.71 16 24 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 25 N -0.36 -17.31 12.59 -54.43 -0.69 -17.99 16 26 C 0.13 2.04 5.98 86.22 0.52 2.55 16 27 C -0.16 -1.95 4.82 30.53 0.15 -1.80 16 28 H 0.05 0.44 8.14 -2.38 -0.02 0.43 16 29 H 0.06 0.43 6.53 -2.39 -0.02 0.41 16 30 H 0.07 0.47 6.61 -2.39 -0.02 0.45 16 31 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 32 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 33 H 0.35 2.23 7.04 -89.69 -0.63 1.60 16 34 H 0.34 2.86 5.60 -89.70 -0.50 2.36 16 35 H 0.10 1.04 8.14 -2.38 -0.02 1.02 16 36 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 37 H 0.10 1.05 6.83 -2.38 -0.02 1.03 16 38 H 0.08 1.17 5.64 -2.39 -0.01 1.15 16 39 H 0.42 11.10 6.31 -92.71 -0.59 10.51 16 40 H 0.16 6.82 5.93 -2.91 -0.02 6.80 16 41 H 0.09 2.76 8.14 -2.39 -0.02 2.75 16 42 H 0.07 2.54 7.71 -2.39 -0.02 2.52 16 43 H 0.10 2.91 8.14 -2.38 -0.02 2.89 16 44 H 0.02 1.44 8.14 -2.38 -0.02 1.42 16 45 H 0.05 2.76 7.65 -2.38 -0.02 2.74 16 46 H 0.27 14.47 8.31 -92.70 -0.77 13.70 16 47 H 0.08 1.64 6.99 -2.39 -0.02 1.62 16 48 H 0.08 1.00 7.03 -2.39 -0.02 0.98 16 49 H 0.10 0.87 6.50 -2.39 -0.02 0.85 16 50 H 0.06 0.93 8.14 -2.39 -0.02 0.92 16 Total: -1.00 -70.82 386.18 1.23 -69.59 By element: Atomic # 1 Polarization: 28.64 SS G_CDS: -0.73 Total: 27.91 kcal Atomic # 6 Polarization: 5.94 SS G_CDS: 7.12 Total: 13.06 kcal Atomic # 7 Polarization: -126.47 SS G_CDS: -7.13 Total: -133.61 kcal Atomic # 8 Polarization: -22.34 SS G_CDS: -0.05 Total: -22.39 kcal Atomic # 14 Polarization: 43.41 SS G_CDS: 2.03 Total: 45.44 kcal Total: -70.82 1.23 -69.59 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000883550440.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.693 kcal (2) G-P(sol) polarization free energy of solvation -70.820 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.872 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.227 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.593 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.100 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds