Wall clock time and date at job start Tue Mar 31 2020 20:30:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53008 * 109.47290 * 2 1 4 4 C 1.52998 * 109.47152 * 240.00112 * 2 1 3 5 5 C 1.50701 * 109.46913 * 60.00206 * 4 2 1 6 6 H 1.07995 * 120.00154 * 359.97438 * 5 4 2 7 7 C 1.37877 * 119.99846 * 180.02562 * 5 4 2 8 8 N 1.31518 * 120.00247 * 359.97438 * 7 5 4 9 9 Si 1.86805 * 119.99906 * 179.97438 * 7 5 4 10 10 H 1.48504 * 109.47020 * 89.99825 * 9 7 5 11 11 H 1.48503 * 109.47180 * 209.99716 * 9 7 5 12 12 H 1.48500 * 109.47212 * 330.00078 * 9 7 5 13 13 C 1.53001 * 109.47346 * 119.99911 * 2 1 3 14 14 N 1.46492 * 109.47491 * 300.00144 * 13 2 1 15 15 C 1.39987 * 120.00571 * 179.97438 * 14 13 2 16 16 C 1.40432 * 125.97164 * 0.02562 * 15 14 13 17 17 C 1.35251 * 107.86242 * 179.97438 * 16 15 14 18 18 N 1.34956 * 107.85957 * 0.26426 * 17 16 15 19 19 C 1.46504 * 125.97022 * 179.69816 * 18 17 16 20 20 C 1.52998 * 109.47234 * 124.99936 * 19 18 17 21 21 N 1.46495 * 109.47485 * 180.02562 * 20 19 18 22 22 C 1.47057 * 125.40581 * 269.72221 * 21 20 19 23 23 C 1.54104 * 103.85900 * 179.86934 * 22 21 20 24 24 N 1.47057 * 103.86439 * 0.37186 * 23 22 21 25 25 C 1.33944 * 125.41420 * 90.02521 * 21 20 19 26 26 O 1.21586 * 123.03720 * 0.02562 * 25 21 20 27 27 N 1.31224 * 125.98067 * 179.97438 * 15 14 13 28 28 H 1.09006 * 109.46821 * 299.99735 * 1 2 3 29 29 H 1.09003 * 109.47159 * 59.99603 * 1 2 3 30 30 H 1.08998 * 109.47236 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.46859 * 179.97438 * 3 2 1 32 32 H 1.08993 * 109.46779 * 300.00356 * 3 2 1 33 33 H 1.09006 * 109.46516 * 60.00080 * 3 2 1 34 34 H 1.09005 * 109.47459 * 179.97438 * 4 2 1 35 35 H 1.09001 * 109.47220 * 299.99950 * 4 2 1 36 36 H 0.96998 * 120.00208 * 179.97438 * 8 7 5 37 37 H 1.08997 * 109.47159 * 179.97438 * 13 2 1 38 38 H 1.09001 * 109.46838 * 60.00165 * 13 2 1 39 39 H 0.97002 * 119.99794 * 0.02562 * 14 13 2 40 40 H 1.08003 * 126.07173 * 359.94174 * 16 15 14 41 41 H 1.08002 * 126.06603 * 179.97438 * 17 16 15 42 42 H 1.09002 * 109.47279 * 245.00221 * 19 18 17 43 43 H 1.08998 * 109.47057 * 5.00406 * 19 18 17 44 44 H 1.09002 * 109.47220 * 300.00321 * 20 19 18 45 45 H 1.09007 * 109.47200 * 59.99954 * 20 19 18 46 46 H 1.09003 * 110.54635 * 298.58865 * 22 21 20 47 47 H 1.08997 * 110.55288 * 61.40190 * 22 21 20 48 48 H 1.08998 * 110.75795 * 241.67662 * 23 22 21 49 49 H 1.08999 * 110.46811 * 118.92341 * 23 22 21 50 50 H 0.96997 * 125.41203 * 179.75567 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 1.5377 -0.0107 -2.4797 6 1 0.9165 0.8671 -2.3805 7 6 1.8703 -0.4820 -3.7319 8 7 2.6264 -1.5514 -3.8527 9 14 1.2471 0.3982 -5.2572 10 1 2.2251 1.4399 -5.6618 11 1 1.0817 -0.5811 -6.3611 12 1 -0.0610 1.0358 -4.9610 13 6 2.0400 -0.7212 1.2492 14 7 1.5518 -0.0307 2.4454 15 6 1.8895 -0.5092 3.7168 16 6 2.6848 -1.6339 3.9905 17 6 2.7749 -1.7613 5.3340 18 7 2.0609 -0.7619 5.8933 19 6 1.8857 -0.5285 7.3290 20 6 2.3189 0.8986 7.6703 21 7 2.1443 1.1318 9.1060 22 6 0.9277 1.6594 9.7417 23 6 1.2822 1.6994 11.2409 24 7 2.6640 1.1987 11.2897 25 6 3.0693 0.9038 10.0476 26 8 4.1768 0.4689 9.7972 27 7 1.5193 0.0151 4.8614 28 1 -0.3633 0.5138 0.8901 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 3.1300 1.4425 0.0005 32 1 1.6767 1.9563 -0.8899 33 1 1.6767 1.9563 0.8901 34 1 3.1300 -0.7208 -1.2495 35 1 1.6767 -1.7489 -1.2493 36 1 2.8601 -1.8832 -4.7337 37 1 3.1300 -0.7216 1.2490 38 1 1.6767 -1.7489 1.2492 39 1 0.9937 0.7577 2.3564 40 1 3.1427 -2.2824 3.2582 41 1 3.3176 -2.5294 5.8649 42 1 0.8369 -0.6630 7.5937 43 1 2.4956 -1.2371 7.8894 44 1 3.3677 1.0331 7.4057 45 1 1.7090 1.6073 7.1099 46 1 0.7064 2.6607 9.3721 47 1 0.0844 0.9912 9.5676 48 1 0.6194 1.0493 11.8120 49 1 1.2320 2.7211 11.6174 50 1 3.1973 1.0980 12.0937 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000922588728.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:30:53 Heat of formation + Delta-G solvation = 40.657584 kcal Electronic energy + Delta-G solvation = -28184.083378 eV Core-core repulsion = 24247.518535 eV Total energy + Delta-G solvation = -3936.564843 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 1.48 seconds Orbital eigenvalues (eV) -42.11520 -41.80090 -39.18389 -37.48912 -36.52181 -35.40966 -34.21687 -32.73032 -30.97717 -29.99548 -29.10750 -28.51210 -27.92906 -27.11782 -24.96189 -24.43545 -23.79887 -21.97925 -21.42633 -20.87435 -19.55155 -18.71863 -18.33181 -18.26428 -17.48948 -17.31444 -16.69851 -16.45613 -16.12008 -15.68415 -15.58127 -15.49528 -15.15893 -14.80965 -14.75195 -14.48723 -14.34745 -14.16796 -13.97013 -13.86238 -13.77130 -13.67721 -13.07763 -12.97084 -12.84614 -12.69816 -12.60072 -12.32435 -12.29633 -12.18002 -11.92808 -11.56460 -11.45984 -11.35630 -11.06440 -10.94304 -10.80996 -10.47813 -10.41627 -9.66621 -9.52286 -8.48764 -8.11463 -6.18101 1.06046 1.28448 1.43675 1.43844 1.54156 1.76901 2.02404 2.15869 2.45677 2.72531 3.05553 3.22947 3.57409 3.61715 3.76339 3.99213 4.07102 4.13731 4.16756 4.22170 4.26672 4.29628 4.50198 4.65440 4.71572 4.75190 4.76819 4.81255 4.82239 4.89344 4.92768 4.98142 5.02641 5.02814 5.15558 5.19286 5.42157 5.51037 5.52863 5.55315 5.59222 5.61923 5.85405 5.93412 6.15377 6.19024 6.28807 6.37224 6.46711 6.79434 6.96686 7.21834 7.48957 7.50174 9.00684 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.032409 B = 0.001688 C = 0.001653 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 863.750722 B =16586.507967 C =16936.811850 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.064 4.064 3 C -0.120 4.120 4 C 0.042 3.958 5 C -0.515 4.515 6 H 0.068 0.932 7 C -0.003 4.003 8 N -0.935 5.935 9 Si 0.955 3.045 10 H -0.277 1.277 11 H -0.288 1.288 12 H -0.263 1.263 13 C 0.164 3.836 14 N -0.711 5.711 15 C 0.329 3.671 16 C -0.330 4.330 17 C 0.090 3.910 18 N -0.379 5.379 19 C 0.133 3.867 20 C 0.152 3.848 21 N -0.631 5.631 22 C 0.083 3.917 23 C 0.094 3.906 24 N -0.734 5.734 25 C 0.685 3.315 26 O -0.640 6.640 27 N -0.380 5.380 28 H 0.059 0.941 29 H 0.051 0.949 30 H 0.039 0.961 31 H 0.038 0.962 32 H 0.052 0.948 33 H 0.059 0.941 34 H -0.010 1.010 35 H -0.009 1.009 36 H 0.259 0.741 37 H 0.046 0.954 38 H 0.048 0.952 39 H 0.403 0.597 40 H 0.143 0.857 41 H 0.205 0.795 42 H 0.098 0.902 43 H 0.103 0.897 44 H 0.062 0.938 45 H 0.098 0.902 46 H 0.097 0.903 47 H 0.102 0.898 48 H 0.109 0.891 49 H 0.104 0.896 50 H 0.436 0.564 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.474 5.718 33.579 34.672 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.064 4.064 3 C -0.177 4.177 4 C 0.005 3.995 5 C -0.553 4.553 6 H 0.086 0.914 7 C -0.200 4.200 8 N -0.577 5.577 9 Si 0.781 3.219 10 H -0.203 1.203 11 H -0.214 1.214 12 H -0.187 1.187 13 C 0.040 3.960 14 N -0.353 5.353 15 C 0.071 3.929 16 C -0.362 4.362 17 C -0.057 4.057 18 N -0.162 5.162 19 C 0.010 3.990 20 C 0.028 3.972 21 N -0.369 5.369 22 C -0.039 4.039 23 C -0.030 4.030 24 N -0.396 5.396 25 C 0.385 3.615 26 O -0.522 6.522 27 N -0.214 5.214 28 H 0.078 0.922 29 H 0.070 0.930 30 H 0.058 0.942 31 H 0.057 0.943 32 H 0.071 0.929 33 H 0.078 0.922 34 H 0.009 0.991 35 H 0.010 0.990 36 H 0.068 0.932 37 H 0.065 0.935 38 H 0.066 0.934 39 H 0.240 0.760 40 H 0.161 0.839 41 H 0.221 0.779 42 H 0.116 0.884 43 H 0.121 0.879 44 H 0.080 0.920 45 H 0.116 0.884 46 H 0.115 0.885 47 H 0.121 0.879 48 H 0.127 0.873 49 H 0.122 0.878 50 H 0.278 0.722 Dipole moment (debyes) X Y Z Total from point charges -6.451 6.190 33.800 34.963 hybrid contribution 0.674 -0.436 -1.455 1.662 sum -5.777 5.755 32.345 33.357 Atomic orbital electron populations 1.21651 0.94180 1.00861 1.00919 1.20674 0.96287 0.96075 0.93368 1.21659 0.99885 0.95201 1.00936 1.18952 0.94442 0.94276 0.91855 1.21601 1.30349 1.11994 0.91327 0.91428 1.25890 0.95754 0.95883 1.02483 1.70103 1.38761 1.24792 1.24003 0.85588 0.79060 0.78177 0.79061 1.20277 1.21409 1.18698 1.21127 0.97352 0.94943 0.82627 1.43782 1.58568 1.33455 0.99455 1.19541 0.93959 0.92749 0.86677 1.21303 1.13924 1.04629 0.96362 1.22860 0.95698 0.93823 0.93339 1.48086 1.40510 1.22109 1.05463 1.22036 1.03936 0.98614 0.74415 1.21194 1.02166 0.96203 0.77641 1.47064 1.15906 1.68270 1.05687 1.22796 0.87609 1.01811 0.91669 1.22643 0.82027 1.02615 0.95699 1.45133 1.17655 1.69839 1.06924 1.16285 0.83658 0.78609 0.82931 1.90943 1.22800 1.54718 1.83763 1.77257 1.29488 1.21165 0.93488 0.92176 0.93002 0.94150 0.94275 0.92943 0.92198 0.99144 0.99028 0.93195 0.93528 0.93361 0.76038 0.83880 0.77858 0.88387 0.87887 0.91995 0.88382 0.88488 0.87937 0.87331 0.87791 0.72163 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.26 8.05 71.98 0.58 -3.68 16 2 C -0.06 -2.46 0.54 -52.18 -0.03 -2.49 16 3 C -0.12 -4.32 8.05 71.98 0.58 -3.74 16 4 C 0.04 2.14 4.04 29.85 0.12 2.26 16 5 C -0.51 -27.83 7.65 25.60 0.20 -27.64 16 6 H 0.07 3.48 5.68 -2.91 -0.02 3.47 16 7 C 0.00 -0.18 5.46 84.65 0.46 0.28 16 8 N -0.94 -56.48 13.29 21.45 0.28 -56.19 16 9 Si 0.96 43.99 29.54 68.60 2.03 46.01 16 10 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 11 H -0.29 -13.20 7.11 99.48 0.71 -12.49 16 12 H -0.26 -11.49 7.11 99.48 0.71 -10.78 16 13 C 0.16 5.71 4.49 86.38 0.39 6.10 16 14 N -0.71 -22.10 5.17 -343.94 -1.78 -23.88 16 15 C 0.33 10.22 8.16 133.39 1.09 11.31 16 16 C -0.33 -9.30 10.11 22.12 0.22 -9.08 16 17 C 0.09 2.02 11.44 83.52 0.96 2.98 16 18 N -0.38 -8.80 3.68 -348.10 -1.28 -10.08 16 19 C 0.13 2.15 6.83 86.38 0.59 2.74 16 20 C 0.15 2.61 6.18 86.38 0.53 3.14 16 21 N -0.63 -8.80 2.96 -838.37 -2.48 -11.28 16 22 C 0.08 0.37 7.68 86.65 0.67 1.03 16 23 C 0.09 0.13 8.06 86.65 0.70 0.83 16 24 N -0.73 -7.03 6.37 -477.34 -3.04 -10.07 16 25 C 0.69 12.96 8.60 179.57 1.54 14.51 16 26 O -0.64 -18.90 17.53 -3.99 -0.07 -18.97 16 27 N -0.38 -11.06 12.43 -54.54 -0.68 -11.74 16 28 H 0.06 1.80 6.86 -2.38 -0.02 1.78 16 29 H 0.05 1.99 6.62 -2.39 -0.02 1.97 16 30 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 31 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 32 H 0.05 2.01 6.62 -2.39 -0.02 2.00 16 33 H 0.06 1.81 6.86 -2.38 -0.02 1.80 16 34 H -0.01 -0.55 8.14 -2.38 -0.02 -0.56 16 35 H -0.01 -0.48 8.14 -2.39 -0.02 -0.50 16 36 H 0.26 14.88 8.31 -92.71 -0.77 14.11 16 37 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 38 H 0.05 1.72 8.14 -2.39 -0.02 1.71 16 39 H 0.40 11.86 6.29 -92.71 -0.58 11.28 16 40 H 0.14 3.96 7.90 -2.91 -0.02 3.94 16 41 H 0.20 2.93 8.06 -2.91 -0.02 2.91 16 42 H 0.10 1.26 8.14 -2.39 -0.02 1.24 16 43 H 0.10 1.54 8.07 -2.39 -0.02 1.52 16 44 H 0.06 1.42 7.91 -2.39 -0.02 1.40 16 45 H 0.10 1.65 8.14 -2.38 -0.02 1.63 16 46 H 0.10 0.24 8.14 -2.39 -0.02 0.22 16 47 H 0.10 0.12 8.14 -2.39 -0.02 0.10 16 48 H 0.11 -0.31 8.14 -2.39 -0.02 -0.33 16 49 H 0.10 -0.22 8.14 -2.39 -0.02 -0.24 16 50 H 0.44 3.00 8.96 -92.71 -0.83 2.17 16 Total: -1.00 -77.64 403.47 1.12 -76.53 By element: Atomic # 1 Polarization: 21.58 SS G_CDS: -0.46 Total: 21.12 kcal Atomic # 6 Polarization: -10.05 SS G_CDS: 8.60 Total: -1.45 kcal Atomic # 7 Polarization: -114.27 SS G_CDS: -8.97 Total: -123.24 kcal Atomic # 8 Polarization: -18.90 SS G_CDS: -0.07 Total: -18.97 kcal Atomic # 14 Polarization: 43.99 SS G_CDS: 2.03 Total: 46.01 kcal Total: -77.64 1.12 -76.53 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000922588728.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.184 kcal (2) G-P(sol) polarization free energy of solvation -77.644 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.539 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.118 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.526 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.658 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.48 seconds