Wall clock time and date at job start Tue Mar 31 2020 20:02:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50700 * 109.46810 * 2 1 4 4 C 1.36597 * 126.58218 * 270.11463 * 3 2 1 5 5 C 1.47526 * 125.76518 * 0.07459 * 4 3 2 6 6 O 1.21589 * 120.00278 * 0.24431 * 5 4 3 7 7 N 1.34773 * 119.99576 * 180.24328 * 5 4 3 8 8 C 1.46504 * 119.99961 * 180.02562 * 7 5 4 9 9 H 1.09000 * 109.45913 * 324.99959 * 8 7 5 10 10 C 1.53041 * 109.46240 * 84.97331 * 8 7 5 11 11 C 1.53197 * 109.31063 * 58.65433 * 10 8 7 12 12 N 1.46926 * 108.77351 * 54.64084 * 11 10 8 13 13 C 1.36929 * 120.63180 * 126.41602 * 12 11 10 14 14 H 1.08009 * 119.99834 * 207.66633 * 13 12 11 15 15 C 1.38810 * 120.00208 * 27.65827 * 13 12 11 16 16 N 1.31617 * 120.00107 * 17.37654 * 15 13 12 17 17 Si 1.86797 * 120.00189 * 197.36906 * 15 13 12 18 18 H 1.48507 * 109.47356 * 0.02562 * 17 15 13 19 19 H 1.48504 * 109.47290 * 120.00507 * 17 15 13 20 20 H 1.48503 * 109.47494 * 240.00676 * 17 15 13 21 21 C 1.46932 * 118.73677 * 306.38517 * 12 11 10 22 22 C 1.53045 * 109.45829 * 205.02993 * 8 7 5 23 23 H 1.09000 * 109.49339 * 181.39645 * 22 8 7 24 24 C 1.53000 * 109.50101 * 61.29433 * 22 8 7 25 25 N 1.34394 * 108.45821 * 180.25991 * 4 3 2 26 26 N 1.28755 * 109.52706 * 359.78113 * 25 4 3 27 27 N 1.34815 * 126.57947 * 90.00151 * 3 2 1 28 28 C 1.46503 * 126.59555 * 0.02562 * 27 3 2 29 29 C 1.53000 * 109.47154 * 269.71530 * 28 27 3 30 30 H 1.08999 * 109.47414 * 179.97438 * 1 2 3 31 31 H 1.08994 * 109.47628 * 300.00282 * 1 2 3 32 32 H 1.09003 * 109.46710 * 60.00541 * 1 2 3 33 33 H 1.08994 * 109.47628 * 239.99718 * 2 1 3 34 34 H 1.09003 * 109.46710 * 119.99459 * 2 1 3 35 35 H 0.97000 * 120.00364 * 0.02562 * 7 5 4 36 36 H 1.09000 * 109.49591 * 178.60618 * 10 8 7 37 37 H 1.09000 * 109.49635 * 298.70576 * 10 8 7 38 38 H 1.09000 * 109.58449 * 174.42201 * 11 10 8 39 39 H 1.09003 * 109.58760 * 294.84862 * 11 10 8 40 40 H 0.97001 * 120.00493 * 179.97438 * 16 15 13 41 41 H 1.08996 * 109.58445 * 173.40017 * 21 12 11 42 42 H 1.09004 * 109.58434 * 293.82788 * 21 12 11 43 43 H 1.09001 * 109.46868 * 60.00013 * 24 22 8 44 44 H 1.09000 * 109.46979 * 180.02562 * 24 22 8 45 45 H 1.09001 * 109.46922 * 299.99894 * 24 22 8 46 46 H 1.09004 * 109.46969 * 149.71889 * 28 27 3 47 47 H 1.08996 * 109.46999 * 29.71559 * 28 27 3 48 48 H 1.08996 * 109.47057 * 59.99701 * 29 28 27 49 49 H 1.08993 * 109.46962 * 180.02562 * 29 28 27 50 50 H 1.09004 * 109.47280 * 300.00149 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0322 1.4208 0.0000 4 6 2.3015 2.1891 -1.0969 5 6 2.1483 1.7688 -2.5027 6 8 1.7463 0.6511 -2.7627 7 7 2.4538 2.6238 -3.4987 8 6 2.3012 2.2066 -4.8948 9 1 2.5470 1.1487 -4.9866 10 6 0.8547 2.4344 -5.3398 11 6 0.5020 3.9163 -5.1770 12 7 1.4916 4.7208 -5.9065 13 6 1.0920 5.6445 -6.8351 14 1 1.7444 5.9013 -7.6567 15 6 -0.1516 6.2505 -6.7206 16 7 -0.7990 6.2131 -5.5753 17 14 -0.9061 7.1195 -8.1920 18 1 0.0154 7.0194 -9.3522 19 1 -2.2023 6.4802 -8.5333 20 1 -1.1316 8.5494 -7.8604 21 6 2.9181 4.5159 -5.6203 22 6 3.2435 3.0276 -5.7781 23 1 3.1126 2.7350 -6.8199 24 6 4.6915 2.7741 -5.3538 25 7 2.7334 3.3911 -0.6788 26 7 2.7454 3.4204 0.6083 27 7 2.3000 2.1783 1.0826 28 6 2.1592 1.7783 2.4849 29 6 0.7523 2.1258 2.9756 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3634 0.5138 0.8899 32 1 -0.3633 0.5138 -0.8901 33 1 1.8934 -0.5138 -0.8899 34 1 1.8933 -0.5138 0.8901 35 1 2.7748 3.5153 -3.2913 36 1 0.7464 2.1474 -6.3857 37 1 0.1859 1.8317 -4.7254 38 1 -0.4918 4.1022 -5.5842 39 1 0.5219 4.1827 -4.1202 40 1 -1.6678 6.6369 -5.4951 41 1 3.5183 5.0974 -6.3200 42 1 3.1350 4.8312 -4.5997 43 1 4.9221 1.7144 -5.4636 44 1 5.3622 3.3594 -5.9830 45 1 4.8217 3.0684 -4.3124 46 1 2.8959 2.3076 3.0894 47 1 2.3201 0.7040 2.5742 48 1 0.0157 1.5967 2.3711 49 1 0.6478 1.8286 4.0190 50 1 0.5914 3.2002 2.8863 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000942725607.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:02:58 Heat of formation + Delta-G solvation = 66.579848 kcal Electronic energy + Delta-G solvation = -30602.197630 eV Core-core repulsion = 26666.756861 eV Total energy + Delta-G solvation = -3935.440770 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 1.27 seconds Orbital eigenvalues (eV) -42.29670 -39.57976 -37.50007 -35.97422 -34.25910 -33.84397 -32.44173 -31.11646 -30.76555 -30.26699 -29.34275 -25.84899 -25.35085 -24.71920 -24.21857 -23.29104 -21.93645 -21.03479 -20.60839 -20.18456 -18.42561 -18.00472 -16.74048 -16.42831 -15.88722 -15.39758 -14.97083 -14.87318 -14.76630 -14.58074 -14.08981 -13.90849 -13.76073 -13.66758 -13.29689 -13.19534 -12.89467 -12.79395 -12.62844 -12.48796 -12.46165 -12.02696 -12.01077 -11.51986 -11.41249 -11.30588 -11.25301 -11.01441 -10.99453 -10.73876 -10.65460 -10.29827 -10.27268 -10.13633 -9.96995 -9.70544 -9.65669 -9.35231 -9.13086 -8.48175 -8.39305 -6.61076 -5.73120 -3.15564 1.11287 1.85740 1.93658 3.40628 3.48450 3.49864 3.50666 3.59659 4.08734 4.12301 4.44434 4.47883 4.53691 4.64328 4.74515 4.92465 5.04358 5.06979 5.21715 5.25261 5.30243 5.38688 5.44191 5.49936 5.57447 5.59505 5.66128 5.68316 5.81244 5.94393 6.01823 6.07029 6.09328 6.17255 6.24832 6.35340 6.37214 6.45097 6.53684 6.70107 6.73952 6.85180 7.00280 7.07011 7.44781 7.74792 7.83511 7.85140 8.09983 8.49782 8.55343 9.26318 9.90024 10.46503 11.34828 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.014421 B = 0.003256 C = 0.003033 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1941.122904 B = 8597.214240 C = 9230.975889 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.062 4.062 3 C 0.122 3.878 4 C -0.098 4.098 5 C 0.603 3.397 6 O -0.547 6.547 7 N -0.693 5.693 8 C 0.161 3.839 9 H 0.075 0.925 10 C -0.154 4.154 11 C 0.174 3.826 12 N -0.591 5.591 13 C -0.251 4.251 14 H 0.066 0.934 15 C 0.002 3.998 16 N -0.900 5.900 17 Si 0.900 3.100 18 H -0.278 1.278 19 H -0.290 1.290 20 H -0.291 1.291 21 C 0.150 3.850 22 C -0.118 4.118 23 H 0.082 0.918 24 C -0.142 4.142 25 N -0.198 5.198 26 N -0.070 5.070 27 N -0.363 5.363 28 C 0.118 3.882 29 C -0.174 4.174 30 H 0.069 0.931 31 H 0.050 0.950 32 H 0.069 0.931 33 H 0.117 0.883 34 H 0.074 0.926 35 H 0.409 0.591 36 H 0.064 0.936 37 H 0.054 0.946 38 H 0.085 0.915 39 H 0.019 0.981 40 H 0.252 0.748 41 H 0.056 0.944 42 H 0.016 0.984 43 H 0.048 0.952 44 H 0.053 0.947 45 H 0.051 0.949 46 H 0.105 0.895 47 H 0.100 0.900 48 H 0.068 0.932 49 H 0.083 0.917 50 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.272 -14.069 15.905 22.141 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.101 4.101 3 C -0.016 4.016 4 C -0.237 4.237 5 C 0.387 3.613 6 O -0.425 6.425 7 N -0.343 5.343 8 C 0.057 3.943 9 H 0.093 0.907 10 C -0.194 4.194 11 C 0.048 3.952 12 N -0.314 5.314 13 C -0.381 4.381 14 H 0.084 0.916 15 C -0.196 4.196 16 N -0.545 5.545 17 Si 0.730 3.270 18 H -0.203 1.203 19 H -0.216 1.216 20 H -0.218 1.218 21 C 0.023 3.977 22 C -0.139 4.139 23 H 0.100 0.900 24 C -0.200 4.200 25 N -0.071 5.071 26 N -0.049 5.049 27 N -0.149 5.149 28 C -0.004 4.004 29 C -0.232 4.232 30 H 0.088 0.912 31 H 0.069 0.931 32 H 0.088 0.912 33 H 0.135 0.865 34 H 0.093 0.907 35 H 0.246 0.754 36 H 0.082 0.918 37 H 0.073 0.927 38 H 0.103 0.897 39 H 0.037 0.963 40 H 0.062 0.938 41 H 0.075 0.925 42 H 0.034 0.966 43 H 0.067 0.933 44 H 0.072 0.928 45 H 0.071 0.929 46 H 0.123 0.877 47 H 0.118 0.882 48 H 0.086 0.914 49 H 0.102 0.898 50 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 6.340 -13.334 16.153 21.884 hybrid contribution -0.695 0.125 -0.557 0.900 sum 5.645 -13.209 15.596 21.203 Atomic orbital electron populations 1.21731 0.93097 1.02731 1.02624 1.20446 0.97342 0.87310 1.05020 1.21915 0.97026 0.96226 0.86419 1.21340 1.14611 0.92062 0.95707 1.16681 0.77571 0.84650 0.82423 1.90714 1.47885 1.20285 1.83607 1.45928 1.65244 1.17306 1.05870 1.20943 0.96356 0.98015 0.78987 0.90731 1.22568 0.94841 1.01440 1.00523 1.20726 0.94917 0.84806 0.94747 1.44072 0.99166 1.42032 1.46082 1.19209 1.01353 1.15921 1.01610 0.91647 1.25027 0.99766 0.98469 0.96370 1.70058 1.15136 1.46944 1.22322 0.86256 0.79161 0.78944 0.82595 1.20282 1.21645 1.21818 1.20921 0.87514 0.91547 0.97684 1.21938 0.93346 0.99153 0.99478 0.89969 1.21772 0.96340 1.00697 1.01220 1.74650 1.10653 1.17821 1.03988 1.81986 1.20302 0.99085 1.03552 1.50479 1.45686 1.11380 1.07341 1.21941 1.00171 1.01819 0.76423 1.22262 0.94957 1.03741 1.02267 0.91228 0.93057 0.91213 0.86530 0.90703 0.75412 0.91752 0.92682 0.89651 0.96311 0.93776 0.92511 0.96600 0.93327 0.92759 0.92945 0.87678 0.88222 0.91351 0.89842 0.91109 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.34 9.89 37.16 0.37 -0.98 16 2 C -0.06 -0.60 5.62 -27.88 -0.16 -0.75 16 3 C 0.12 1.55 6.27 -81.87 -0.51 1.03 16 4 C -0.10 -1.56 6.99 -83.55 -0.58 -2.15 16 5 C 0.60 10.44 7.78 -12.48 -0.10 10.34 16 6 O -0.55 -9.85 14.38 5.29 0.08 -9.78 16 7 N -0.69 -12.21 3.59 -54.81 -0.20 -12.40 16 8 C 0.16 2.86 2.21 -67.88 -0.15 2.71 16 9 H 0.07 1.29 7.58 -51.93 -0.39 0.90 16 10 C -0.15 -3.10 5.77 -26.61 -0.15 -3.25 16 11 C 0.17 4.23 5.05 -3.71 -0.02 4.21 16 12 N -0.59 -14.74 2.99 -172.33 -0.52 -15.26 16 13 C -0.25 -6.91 9.58 -15.06 -0.14 -7.05 16 14 H 0.07 1.77 7.89 -52.48 -0.41 1.35 16 15 C 0.00 0.06 4.91 -17.43 -0.09 -0.02 16 16 N -0.90 -26.55 11.19 55.49 0.62 -25.93 16 17 Si 0.90 21.93 29.59 -169.99 -5.03 16.90 16 18 H -0.28 -6.60 7.11 56.52 0.40 -6.19 16 19 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 20 H -0.29 -7.17 7.11 56.52 0.40 -6.76 16 21 C 0.15 3.09 5.50 -3.72 -0.02 3.07 16 22 C -0.12 -2.02 2.67 -90.51 -0.24 -2.27 16 23 H 0.08 1.43 8.14 -51.93 -0.42 1.01 16 24 C -0.14 -2.02 9.05 37.16 0.34 -1.68 16 25 N -0.20 -3.38 12.04 32.85 0.40 -2.99 16 26 N -0.07 -1.07 13.78 60.35 0.83 -0.24 16 27 N -0.36 -4.18 3.63 -56.85 -0.21 -4.39 16 28 C 0.12 0.76 7.02 -4.04 -0.03 0.73 16 29 C -0.17 -1.02 10.24 37.16 0.38 -0.64 16 30 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.05 0.41 6.16 -51.93 -0.32 0.09 16 32 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 33 H 0.12 1.31 6.44 -51.93 -0.33 0.98 16 34 H 0.07 0.48 7.18 -51.93 -0.37 0.11 16 35 H 0.41 7.48 6.41 -40.82 -0.26 7.22 16 36 H 0.06 1.29 8.14 -51.93 -0.42 0.86 16 37 H 0.05 1.11 8.14 -51.93 -0.42 0.68 16 38 H 0.09 2.35 6.04 -51.93 -0.31 2.04 16 39 H 0.02 0.49 7.74 -51.93 -0.40 0.09 16 40 H 0.25 7.21 8.31 -40.82 -0.34 6.87 16 41 H 0.06 1.15 7.93 -51.93 -0.41 0.74 16 42 H 0.02 0.34 6.64 -51.93 -0.34 -0.01 16 43 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 44 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 45 H 0.05 0.75 7.54 -51.93 -0.39 0.36 16 46 H 0.10 0.55 8.14 -51.93 -0.42 0.13 16 47 H 0.10 0.39 7.15 -51.93 -0.37 0.02 16 48 H 0.07 0.44 6.16 -51.93 -0.32 0.12 16 49 H 0.08 0.28 8.14 -51.93 -0.42 -0.15 16 50 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 LS Contribution 391.67 15.07 5.90 5.90 Total: -1.00 -32.71 391.67 -7.25 -39.95 By element: Atomic # 1 Polarization: 12.92 SS G_CDS: -8.01 Total: 4.91 kcal Atomic # 6 Polarization: 4.42 SS G_CDS: -1.11 Total: 3.31 kcal Atomic # 7 Polarization: -62.13 SS G_CDS: 0.93 Total: -61.20 kcal Atomic # 8 Polarization: -9.85 SS G_CDS: 0.08 Total: -9.78 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.03 Total: 16.90 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -32.71 -7.25 -39.95 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000942725607.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.531 kcal (2) G-P(sol) polarization free energy of solvation -32.705 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.825 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.246 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.951 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.580 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds