Wall clock time and date at job start Tue Mar 31 2020 20:02:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50700 * 109.46810 * 2 1 4 4 C 1.36597 * 126.58218 * 270.11463 * 3 2 1 5 5 C 1.47526 * 125.76518 * 0.07459 * 4 3 2 6 6 O 1.21589 * 120.00278 * 0.24431 * 5 4 3 7 7 N 1.34773 * 119.99576 * 180.24328 * 5 4 3 8 8 C 1.46504 * 119.99961 * 180.02562 * 7 5 4 9 9 H 1.09000 * 109.45913 * 324.99959 * 8 7 5 10 10 C 1.53041 * 109.46240 * 84.97331 * 8 7 5 11 11 C 1.53197 * 109.31063 * 58.65433 * 10 8 7 12 12 N 1.46926 * 108.77351 * 54.64084 * 11 10 8 13 13 C 1.36929 * 120.63180 * 126.41602 * 12 11 10 14 14 H 1.08009 * 119.99834 * 207.66633 * 13 12 11 15 15 C 1.38810 * 120.00208 * 27.65827 * 13 12 11 16 16 N 1.31617 * 120.00107 * 17.37654 * 15 13 12 17 17 Si 1.86797 * 120.00189 * 197.36906 * 15 13 12 18 18 H 1.48507 * 109.47356 * 0.02562 * 17 15 13 19 19 H 1.48504 * 109.47290 * 120.00507 * 17 15 13 20 20 H 1.48503 * 109.47494 * 240.00676 * 17 15 13 21 21 C 1.46932 * 118.73677 * 306.38517 * 12 11 10 22 22 C 1.53045 * 109.45829 * 205.02993 * 8 7 5 23 23 H 1.09000 * 109.49339 * 181.39645 * 22 8 7 24 24 C 1.53000 * 109.50101 * 61.29433 * 22 8 7 25 25 N 1.34394 * 108.45821 * 180.25991 * 4 3 2 26 26 N 1.28755 * 109.52706 * 359.78113 * 25 4 3 27 27 N 1.34815 * 126.57947 * 90.00151 * 3 2 1 28 28 C 1.46503 * 126.59555 * 0.02562 * 27 3 2 29 29 C 1.53000 * 109.47154 * 269.71530 * 28 27 3 30 30 H 1.08999 * 109.47414 * 179.97438 * 1 2 3 31 31 H 1.08994 * 109.47628 * 300.00282 * 1 2 3 32 32 H 1.09003 * 109.46710 * 60.00541 * 1 2 3 33 33 H 1.08994 * 109.47628 * 239.99718 * 2 1 3 34 34 H 1.09003 * 109.46710 * 119.99459 * 2 1 3 35 35 H 0.97000 * 120.00364 * 0.02562 * 7 5 4 36 36 H 1.09000 * 109.49591 * 178.60618 * 10 8 7 37 37 H 1.09000 * 109.49635 * 298.70576 * 10 8 7 38 38 H 1.09000 * 109.58449 * 174.42201 * 11 10 8 39 39 H 1.09003 * 109.58760 * 294.84862 * 11 10 8 40 40 H 0.97001 * 120.00493 * 179.97438 * 16 15 13 41 41 H 1.08996 * 109.58445 * 173.40017 * 21 12 11 42 42 H 1.09004 * 109.58434 * 293.82788 * 21 12 11 43 43 H 1.09001 * 109.46868 * 60.00013 * 24 22 8 44 44 H 1.09000 * 109.46979 * 180.02562 * 24 22 8 45 45 H 1.09001 * 109.46922 * 299.99894 * 24 22 8 46 46 H 1.09004 * 109.46969 * 149.71889 * 28 27 3 47 47 H 1.08996 * 109.46999 * 29.71559 * 28 27 3 48 48 H 1.08996 * 109.47057 * 59.99701 * 29 28 27 49 49 H 1.08993 * 109.46962 * 180.02562 * 29 28 27 50 50 H 1.09004 * 109.47280 * 300.00149 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0322 1.4208 0.0000 4 6 2.3015 2.1891 -1.0969 5 6 2.1483 1.7688 -2.5027 6 8 1.7463 0.6511 -2.7627 7 7 2.4538 2.6238 -3.4987 8 6 2.3012 2.2066 -4.8948 9 1 2.5470 1.1487 -4.9866 10 6 0.8547 2.4344 -5.3398 11 6 0.5020 3.9163 -5.1770 12 7 1.4916 4.7208 -5.9065 13 6 1.0920 5.6445 -6.8351 14 1 1.7444 5.9013 -7.6567 15 6 -0.1516 6.2505 -6.7206 16 7 -0.7990 6.2131 -5.5753 17 14 -0.9061 7.1195 -8.1920 18 1 0.0154 7.0194 -9.3522 19 1 -2.2023 6.4802 -8.5333 20 1 -1.1316 8.5494 -7.8604 21 6 2.9181 4.5159 -5.6203 22 6 3.2435 3.0276 -5.7781 23 1 3.1126 2.7350 -6.8199 24 6 4.6915 2.7741 -5.3538 25 7 2.7334 3.3911 -0.6788 26 7 2.7454 3.4204 0.6083 27 7 2.3000 2.1783 1.0826 28 6 2.1592 1.7783 2.4849 29 6 0.7523 2.1258 2.9756 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3634 0.5138 0.8899 32 1 -0.3633 0.5138 -0.8901 33 1 1.8934 -0.5138 -0.8899 34 1 1.8933 -0.5138 0.8901 35 1 2.7748 3.5153 -3.2913 36 1 0.7464 2.1474 -6.3857 37 1 0.1859 1.8317 -4.7254 38 1 -0.4918 4.1022 -5.5842 39 1 0.5219 4.1827 -4.1202 40 1 -1.6678 6.6369 -5.4951 41 1 3.5183 5.0974 -6.3200 42 1 3.1350 4.8312 -4.5997 43 1 4.9221 1.7144 -5.4636 44 1 5.3622 3.3594 -5.9830 45 1 4.8217 3.0684 -4.3124 46 1 2.8959 2.3076 3.0894 47 1 2.3201 0.7040 2.5742 48 1 0.0157 1.5967 2.3711 49 1 0.6478 1.8286 4.0190 50 1 0.5914 3.2002 2.8863 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000942725607.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:02:57 Heat of formation + Delta-G solvation = 45.232403 kcal Electronic energy + Delta-G solvation = -30603.123325 eV Core-core repulsion = 26666.756861 eV Total energy + Delta-G solvation = -3936.366464 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -43.35528 -41.02472 -39.03619 -36.83341 -35.97846 -34.72826 -33.94380 -32.88102 -32.00730 -31.44981 -30.57912 -27.40095 -27.11793 -25.62529 -25.13733 -24.43192 -23.59851 -22.73354 -21.72855 -21.19451 -20.00425 -19.15934 -18.61601 -17.47404 -16.97082 -16.82287 -16.68284 -16.03628 -15.83753 -15.74346 -15.56442 -15.37141 -15.06537 -14.75234 -14.70768 -14.54582 -14.23237 -13.87463 -13.76723 -13.51525 -13.41571 -13.14751 -13.14179 -12.96458 -12.75131 -12.71062 -12.53119 -12.36507 -12.32826 -12.14362 -11.98510 -11.94875 -11.86377 -11.66053 -11.45725 -11.21700 -11.10982 -10.99611 -10.53695 -10.28083 -9.88684 -8.66423 -7.85733 -5.31229 0.11384 0.62608 1.10188 1.45994 1.47786 1.58521 2.18647 2.30965 2.51906 3.15704 3.28930 3.40166 3.52795 3.67126 3.72182 3.83101 3.95006 4.09182 4.11130 4.14547 4.23177 4.29606 4.42095 4.44223 4.50732 4.60978 4.65766 4.69603 4.75653 4.79616 4.82227 4.86729 4.96678 4.99271 5.04259 5.09038 5.12603 5.18479 5.21884 5.31018 5.38015 5.44563 5.50872 5.53742 5.60837 5.66156 5.75329 6.39123 6.49051 6.91223 7.15099 7.18991 7.86737 8.38869 9.20358 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.014421 B = 0.003256 C = 0.003033 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1941.122904 B = 8597.214240 C = 9230.975889 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.058 4.058 3 C 0.135 3.865 4 C -0.130 4.130 5 C 0.602 3.398 6 O -0.557 6.557 7 N -0.696 5.696 8 C 0.167 3.833 9 H 0.089 0.911 10 C -0.141 4.141 11 C 0.189 3.811 12 N -0.607 5.607 13 C -0.258 4.258 14 H 0.071 0.929 15 C -0.053 4.053 16 N -0.936 5.936 17 Si 0.967 3.033 18 H -0.264 1.264 19 H -0.292 1.292 20 H -0.294 1.294 21 C 0.148 3.852 22 C -0.105 4.105 23 H 0.086 0.914 24 C -0.133 4.133 25 N -0.231 5.231 26 N -0.094 5.094 27 N -0.347 5.347 28 C 0.103 3.897 29 C -0.171 4.171 30 H 0.092 0.908 31 H 0.065 0.935 32 H 0.031 0.969 33 H 0.102 0.898 34 H 0.120 0.880 35 H 0.404 0.596 36 H 0.068 0.932 37 H 0.051 0.949 38 H 0.048 0.952 39 H -0.010 1.010 40 H 0.247 0.753 41 H 0.059 0.941 42 H 0.011 0.989 43 H 0.066 0.934 44 H 0.068 0.932 45 H 0.048 0.952 46 H 0.119 0.881 47 H 0.138 0.862 48 H 0.063 0.937 49 H 0.116 0.884 50 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.475 -16.281 16.983 24.686 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.098 4.098 3 C -0.004 4.004 4 C -0.270 4.270 5 C 0.387 3.613 6 O -0.436 6.436 7 N -0.346 5.346 8 C 0.063 3.937 9 H 0.107 0.893 10 C -0.181 4.181 11 C 0.063 3.937 12 N -0.330 5.330 13 C -0.389 4.389 14 H 0.088 0.912 15 C -0.248 4.248 16 N -0.583 5.583 17 Si 0.795 3.205 18 H -0.188 1.188 19 H -0.219 1.219 20 H -0.221 1.221 21 C 0.023 3.977 22 C -0.126 4.126 23 H 0.104 0.896 24 C -0.191 4.191 25 N -0.104 5.104 26 N -0.073 5.073 27 N -0.133 5.133 28 C -0.015 4.015 29 C -0.229 4.229 30 H 0.111 0.889 31 H 0.084 0.916 32 H 0.050 0.950 33 H 0.120 0.880 34 H 0.138 0.862 35 H 0.240 0.760 36 H 0.087 0.913 37 H 0.070 0.930 38 H 0.066 0.934 39 H 0.008 0.992 40 H 0.056 0.944 41 H 0.078 0.922 42 H 0.029 0.971 43 H 0.085 0.915 44 H 0.087 0.913 45 H 0.067 0.933 46 H 0.137 0.863 47 H 0.156 0.844 48 H 0.082 0.918 49 H 0.134 0.866 50 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 7.582 -15.554 17.254 24.436 hybrid contribution -1.076 0.780 -0.745 1.523 sum 6.507 -14.774 16.509 23.091 Atomic orbital electron populations 1.21718 0.92815 1.03865 1.01476 1.20586 0.97344 0.85317 1.06504 1.22346 0.95238 0.97120 0.85720 1.21381 1.16887 0.92856 0.95903 1.16891 0.76962 0.84409 0.83024 1.90692 1.48325 1.20570 1.84002 1.45923 1.65577 1.17179 1.05926 1.20873 0.94573 0.98905 0.79343 0.89289 1.22386 0.96859 0.98018 1.00847 1.20388 0.93347 0.87422 0.92575 1.44300 1.00980 1.41882 1.45832 1.19572 1.01519 1.15676 1.02093 0.91177 1.25805 1.00420 0.99849 0.98733 1.70227 1.15228 1.48445 1.24353 0.85217 0.78151 0.77307 0.79826 1.18776 1.21903 1.22145 1.21073 0.85080 0.94259 0.97327 1.21789 0.95221 0.95973 0.99591 0.89621 1.21692 0.94047 1.02172 1.01180 1.74610 1.11924 1.18831 1.04991 1.81860 1.21300 1.01119 1.02994 1.50840 1.43608 1.09878 1.08929 1.22559 1.00996 1.04332 0.73659 1.22266 0.94281 1.02119 1.04187 0.88941 0.91620 0.94966 0.87997 0.86194 0.75976 0.91308 0.92985 0.93360 0.99179 0.94370 0.92219 0.97115 0.91492 0.91314 0.93303 0.86256 0.84405 0.91799 0.86561 0.93533 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.37 9.89 71.98 0.71 -1.66 16 2 C -0.06 -0.98 5.62 29.85 0.17 -0.82 16 3 C 0.14 3.28 6.27 41.72 0.26 3.55 16 4 C -0.13 -4.23 6.99 40.82 0.29 -3.95 16 5 C 0.60 21.19 7.78 86.69 0.67 21.87 16 6 O -0.56 -20.08 14.38 -4.00 -0.06 -20.14 16 7 N -0.70 -25.00 3.59 -445.57 -1.60 -26.60 16 8 C 0.17 5.88 2.21 45.02 0.10 5.98 16 9 H 0.09 2.95 7.58 -2.39 -0.02 2.93 16 10 C -0.14 -5.81 5.77 30.67 0.18 -5.63 16 11 C 0.19 9.62 5.05 86.36 0.44 10.05 16 12 N -0.61 -31.02 2.99 -699.13 -2.09 -33.11 16 13 C -0.26 -14.43 9.58 84.03 0.81 -13.63 16 14 H 0.07 3.78 7.89 -2.91 -0.02 3.76 16 15 C -0.05 -3.04 4.91 84.86 0.42 -2.62 16 16 N -0.94 -57.50 11.19 21.65 0.24 -57.26 16 17 Si 0.97 46.01 29.59 68.60 2.03 48.04 16 18 H -0.26 -11.80 7.11 99.48 0.71 -11.10 16 19 H -0.29 -13.91 7.11 99.48 0.71 -13.20 16 20 H -0.29 -14.06 7.11 99.48 0.71 -13.35 16 21 C 0.15 6.13 5.50 86.35 0.48 6.61 16 22 C -0.11 -3.49 2.67 -10.72 -0.03 -3.52 16 23 H 0.09 2.82 8.14 -2.39 -0.02 2.80 16 24 C -0.13 -3.49 9.05 71.98 0.65 -2.83 16 25 N -0.23 -8.15 12.04 -50.00 -0.60 -8.75 16 26 N -0.09 -2.87 13.78 37.02 0.51 -2.36 16 27 N -0.35 -7.49 3.63 -333.77 -1.21 -8.70 16 28 C 0.10 1.00 7.02 86.38 0.61 1.61 16 29 C -0.17 -1.55 10.24 71.98 0.74 -0.81 16 30 H 0.09 1.14 8.14 -2.39 -0.02 1.12 16 31 H 0.06 0.90 6.16 -2.39 -0.01 0.89 16 32 H 0.03 0.78 8.14 -2.39 -0.02 0.76 16 33 H 0.10 2.12 6.44 -2.39 -0.02 2.10 16 34 H 0.12 0.96 7.18 -2.39 -0.02 0.94 16 35 H 0.40 15.35 6.41 -92.71 -0.59 14.76 16 36 H 0.07 2.75 8.14 -2.39 -0.02 2.74 16 37 H 0.05 2.15 8.14 -2.39 -0.02 2.13 16 38 H 0.05 2.80 6.04 -2.39 -0.01 2.79 16 39 H -0.01 -0.55 7.74 -2.39 -0.02 -0.57 16 40 H 0.25 14.74 8.31 -92.71 -0.77 13.97 16 41 H 0.06 2.41 7.93 -2.39 -0.02 2.39 16 42 H 0.01 0.47 6.64 -2.38 -0.02 0.45 16 43 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 44 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 45 H 0.05 1.32 7.54 -2.39 -0.02 1.31 16 46 H 0.12 0.89 8.14 -2.38 -0.02 0.87 16 47 H 0.14 0.36 7.15 -2.39 -0.02 0.34 16 48 H 0.06 0.65 6.16 -2.39 -0.01 0.64 16 49 H 0.12 0.32 8.14 -2.39 -0.02 0.30 16 50 H 0.05 0.66 8.14 -2.38 -0.02 0.64 16 Total: -1.00 -75.21 391.67 4.05 -71.16 By element: Atomic # 1 Polarization: 23.18 SS G_CDS: 0.36 Total: 23.53 kcal Atomic # 6 Polarization: 7.72 SS G_CDS: 6.48 Total: 14.20 kcal Atomic # 7 Polarization: -132.03 SS G_CDS: -4.76 Total: -136.79 kcal Atomic # 8 Polarization: -20.08 SS G_CDS: -0.06 Total: -20.14 kcal Atomic # 14 Polarization: 46.01 SS G_CDS: 2.03 Total: 48.04 kcal Total: -75.21 4.05 -71.16 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000942725607.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.389 kcal (2) G-P(sol) polarization free energy of solvation -75.206 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.183 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.049 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.156 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.232 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds