Wall clock time and date at job start Tue Mar 31 2020 20:03:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.50699 * 109.47322 * 2 1 4 4 C 1.36595 * 126.58002 * 270.02457 * 3 2 1 5 5 C 1.47532 * 125.77006 * 359.95616 * 4 3 2 6 6 O 1.21597 * 119.99772 * 0.02562 * 5 4 3 7 7 N 1.34778 * 119.99857 * 180.02562 * 5 4 3 8 8 C 1.46493 * 119.99649 * 180.02562 * 7 5 4 9 9 H 1.09004 * 109.45349 * 35.02864 * 8 7 5 10 10 C 1.53041 * 109.43295 * 275.04784 * 8 7 5 11 11 C 1.53193 * 109.33907 * 301.31760 * 10 8 7 12 12 N 1.46929 * 108.77142 * 305.37558 * 11 10 8 13 13 C 1.36941 * 120.62874 * 233.62976 * 12 11 10 14 14 H 1.08005 * 119.99741 * 152.61023 * 13 12 11 15 15 C 1.38808 * 120.00144 * 332.61109 * 13 12 11 16 16 N 1.31622 * 120.00074 * 159.37218 * 15 13 12 17 17 Si 1.86800 * 120.00103 * 339.36867 * 15 13 12 18 18 H 1.48504 * 109.46685 * 92.92930 * 17 15 13 19 19 H 1.48501 * 109.47365 * 212.93054 * 17 15 13 20 20 H 1.48499 * 109.47156 * 332.93104 * 17 15 13 21 21 C 1.46923 * 118.73867 * 53.61419 * 12 11 10 22 22 C 1.53039 * 109.46106 * 154.99783 * 8 7 5 23 23 H 1.09004 * 109.50106 * 178.63299 * 22 8 7 24 24 C 1.53004 * 109.49660 * 298.70181 * 22 8 7 25 25 N 1.34401 * 108.46110 * 180.22038 * 4 3 2 26 26 N 1.28761 * 109.51748 * 359.58760 * 25 4 3 27 27 N 1.34808 * 126.58132 * 89.99999 * 3 2 1 28 28 C 1.46496 * 126.59533 * 0.05514 * 27 3 2 29 29 C 1.52998 * 109.47486 * 90.00066 * 28 27 3 30 30 H 1.09002 * 109.46771 * 300.00759 * 1 2 3 31 31 H 1.09000 * 109.46894 * 59.99980 * 1 2 3 32 32 H 1.08991 * 109.47162 * 180.02562 * 1 2 3 33 33 H 1.08998 * 109.46916 * 239.99988 * 2 1 3 34 34 H 1.09000 * 109.46894 * 120.00020 * 2 1 3 35 35 H 0.96994 * 119.99977 * 359.97438 * 7 5 4 36 36 H 1.09007 * 109.47368 * 181.36198 * 10 8 7 37 37 H 1.09000 * 109.52635 * 61.29756 * 10 8 7 38 38 H 1.09001 * 109.58732 * 185.59372 * 11 10 8 39 39 H 1.08990 * 109.58827 * 65.16369 * 11 10 8 40 40 H 0.96994 * 119.99948 * 179.97438 * 16 15 13 41 41 H 1.08999 * 109.58854 * 186.60263 * 21 12 11 42 42 H 1.09000 * 109.70605 * 66.24448 * 21 12 11 43 43 H 1.09004 * 109.46910 * 179.97438 * 24 22 8 44 44 H 1.08990 * 109.46820 * 59.93345 * 24 22 8 45 45 H 1.08997 * 109.46800 * 299.93410 * 24 22 8 46 46 H 1.09004 * 109.47255 * 210.00080 * 28 27 3 47 47 H 1.09000 * 109.47216 * 329.99862 * 28 27 3 48 48 H 1.09000 * 109.47059 * 59.99700 * 29 28 27 49 49 H 1.08994 * 109.47549 * 180.02562 * 29 28 27 50 50 H 1.09004 * 109.46885 * 300.00241 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.3034 2.1884 -1.0969 5 6 2.1545 1.7666 -2.5028 6 8 1.7588 0.6466 -2.7628 7 7 2.4572 2.6226 -3.4988 8 6 2.3089 2.2039 -4.8948 9 1 1.4485 1.5408 -4.9854 10 6 3.5723 1.4648 -5.3416 11 6 4.7839 2.3884 -5.1810 12 7 4.5260 3.6378 -5.9100 13 6 5.4181 4.0992 -6.8409 14 1 5.0747 4.7149 -7.6591 15 6 6.7636 3.7757 -6.7329 16 7 7.5456 3.8519 -7.7889 17 14 7.4646 3.2323 -5.0889 18 1 7.4202 1.7507 -4.9974 19 1 8.8714 3.6935 -4.9738 20 1 6.6592 3.8205 -3.9886 21 6 3.2928 4.3823 -5.6214 22 6 2.0978 3.4364 -5.7771 23 1 2.0116 3.1276 -6.8189 24 6 0.8173 4.1568 -5.3503 25 7 2.7340 3.3910 -0.6789 26 7 2.7396 3.4224 0.6083 27 7 2.3003 2.1782 1.0825 28 6 2.1600 1.7781 2.4848 29 6 3.4715 1.1590 2.9722 30 1 -0.3633 0.5140 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0276 0.0005 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 2.7725 3.5161 -3.2913 36 1 3.4725 1.1741 -6.3875 37 1 3.7098 0.5744 -4.7281 38 1 5.6701 1.9031 -5.5899 39 1 4.9391 2.6071 -4.1246 40 1 8.4859 3.6262 -7.7133 41 1 3.1950 5.2126 -6.3209 42 1 3.3249 4.7656 -4.6016 43 1 0.6676 5.0348 -5.9787 44 1 0.9040 4.4653 -4.3086 45 1 -0.0324 3.4829 -5.4601 46 1 1.9241 2.6532 3.0905 47 1 1.3571 1.0465 2.5753 48 1 4.2743 1.8906 2.8817 49 1 3.3670 0.8609 4.0154 50 1 3.7073 0.2840 2.3665 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000942725608.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:03:02 Heat of formation + Delta-G solvation = 71.085116 kcal Electronic energy + Delta-G solvation = -30696.195638 eV Core-core repulsion = 26760.950231 eV Total energy + Delta-G solvation = -3935.245406 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -42.42795 -39.79547 -37.75322 -36.06238 -34.45990 -34.01495 -32.56592 -31.53323 -30.90576 -30.48246 -29.58176 -26.33685 -25.51505 -24.92558 -24.12404 -23.33184 -21.94473 -21.46948 -20.83025 -20.37135 -18.74443 -18.10207 -16.78632 -16.38808 -16.27620 -15.65782 -15.15412 -14.98369 -14.87712 -14.80647 -14.24007 -14.19862 -13.93372 -13.63463 -13.51633 -13.38885 -13.17723 -13.00728 -12.72101 -12.56456 -12.46036 -12.20797 -12.11133 -11.71821 -11.69016 -11.56851 -11.53828 -11.43115 -11.21204 -11.06700 -10.59574 -10.46750 -10.40898 -10.16732 -9.91103 -9.85048 -9.62081 -9.44012 -9.26753 -8.73299 -8.50554 -6.92130 -5.91030 -3.26424 0.98580 1.70809 1.81695 3.33891 3.37302 3.42196 3.53139 3.58026 3.96703 4.01750 4.34306 4.36399 4.56201 4.57930 4.61690 4.81429 4.90949 4.98217 4.99261 5.06234 5.09817 5.20476 5.29800 5.35931 5.40484 5.49096 5.49449 5.54933 5.65935 5.74855 5.85334 5.89138 5.92729 5.95070 6.05249 6.11493 6.22594 6.24054 6.35642 6.42852 6.46819 6.66235 6.70877 6.75952 6.82581 6.99884 7.66477 7.94275 8.00273 8.36596 8.37900 8.98182 9.76621 10.14229 11.24962 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.013686 B = 0.003701 C = 0.003277 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2045.364022 B = 7563.758396 C = 8543.071836 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.065 4.065 3 C 0.124 3.876 4 C -0.101 4.101 5 C 0.603 3.397 6 O -0.543 6.543 7 N -0.698 5.698 8 C 0.160 3.840 9 H 0.081 0.919 10 C -0.146 4.146 11 C 0.128 3.872 12 N -0.605 5.605 13 C -0.258 4.258 14 H 0.086 0.914 15 C 0.025 3.975 16 N -0.909 5.909 17 Si 0.881 3.119 18 H -0.290 1.290 19 H -0.304 1.304 20 H -0.270 1.270 21 C 0.153 3.847 22 C -0.119 4.119 23 H 0.087 0.913 24 C -0.142 4.142 25 N -0.200 5.200 26 N -0.069 5.069 27 N -0.362 5.362 28 C 0.117 3.883 29 C -0.172 4.172 30 H 0.048 0.952 31 H 0.067 0.933 32 H 0.070 0.930 33 H 0.118 0.882 34 H 0.077 0.923 35 H 0.408 0.592 36 H 0.075 0.925 37 H 0.059 0.941 38 H 0.071 0.929 39 H 0.024 0.976 40 H 0.262 0.738 41 H 0.067 0.933 42 H 0.021 0.979 43 H 0.056 0.944 44 H 0.052 0.948 45 H 0.049 0.951 46 H 0.106 0.894 47 H 0.101 0.899 48 H 0.070 0.930 49 H 0.084 0.916 50 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.972 -7.586 20.757 27.268 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.104 4.104 3 C -0.014 4.014 4 C -0.240 4.240 5 C 0.387 3.613 6 O -0.421 6.421 7 N -0.349 5.349 8 C 0.056 3.944 9 H 0.099 0.901 10 C -0.186 4.186 11 C 0.003 3.997 12 N -0.328 5.328 13 C -0.386 4.386 14 H 0.104 0.896 15 C -0.174 4.174 16 N -0.552 5.552 17 Si 0.711 3.289 18 H -0.218 1.218 19 H -0.233 1.233 20 H -0.195 1.195 21 C 0.027 3.973 22 C -0.140 4.140 23 H 0.106 0.894 24 C -0.200 4.200 25 N -0.073 5.073 26 N -0.048 5.048 27 N -0.148 5.148 28 C -0.004 4.004 29 C -0.231 4.231 30 H 0.067 0.933 31 H 0.086 0.914 32 H 0.089 0.911 33 H 0.136 0.864 34 H 0.095 0.905 35 H 0.245 0.755 36 H 0.094 0.906 37 H 0.078 0.922 38 H 0.089 0.911 39 H 0.042 0.958 40 H 0.072 0.928 41 H 0.085 0.915 42 H 0.038 0.962 43 H 0.075 0.925 44 H 0.071 0.929 45 H 0.069 0.931 46 H 0.124 0.876 47 H 0.119 0.881 48 H 0.089 0.911 49 H 0.103 0.897 50 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -15.565 -6.938 20.896 26.964 hybrid contribution 0.540 -0.775 1.017 1.388 sum -15.025 -7.713 21.913 27.666 Atomic orbital electron populations 1.21659 0.93138 1.02777 1.02281 1.20483 0.97238 0.87324 1.05390 1.21920 0.96915 0.96143 0.86374 1.21329 1.14683 0.92342 0.95674 1.16699 0.77469 0.84694 0.82427 1.90728 1.48147 1.19622 1.83581 1.45970 1.65713 1.17281 1.05942 1.20960 0.98325 0.96137 0.78947 0.90051 1.22397 0.96161 0.98422 1.01628 1.21282 0.96282 0.87143 0.95036 1.44356 1.21176 1.20980 1.46314 1.18914 0.87097 1.30672 1.01916 0.89629 1.25246 0.95985 0.99305 0.96870 1.69835 1.06047 1.51483 1.27841 0.86991 0.77608 0.77497 0.86774 1.21802 1.23259 1.19480 1.20951 0.85065 0.93223 0.98106 1.21940 0.96237 0.95954 0.99827 0.89441 1.21766 0.96826 1.00219 1.01234 1.74651 1.10397 1.18207 1.04075 1.81990 1.20200 0.99116 1.03484 1.50485 1.45664 1.11232 1.07410 1.21974 1.00102 1.02038 0.76330 1.22202 0.96597 1.01900 1.02351 0.93291 0.91430 0.91128 0.86374 0.90482 0.75460 0.90644 0.92191 0.91095 0.95773 0.92829 0.91491 0.96157 0.92504 0.92921 0.93142 0.87558 0.88108 0.91107 0.89727 0.91609 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.08 9.90 37.16 0.37 -0.71 16 2 C -0.06 -0.58 5.43 -27.88 -0.15 -0.73 16 3 C 0.12 1.47 6.27 -81.88 -0.51 0.95 16 4 C -0.10 -1.51 6.99 -83.55 -0.58 -2.09 16 5 C 0.60 9.70 7.78 -12.47 -0.10 9.61 16 6 O -0.54 -9.14 14.38 5.28 0.08 -9.06 16 7 N -0.70 -11.36 3.59 -54.81 -0.20 -11.56 16 8 C 0.16 2.63 2.21 -67.89 -0.15 2.48 16 9 H 0.08 1.29 7.58 -51.93 -0.39 0.90 16 10 C -0.15 -2.74 5.77 -26.61 -0.15 -2.90 16 11 C 0.13 2.89 3.94 -3.71 -0.01 2.87 16 12 N -0.60 -14.35 2.77 -172.32 -0.48 -14.83 16 13 C -0.26 -7.23 10.03 -15.06 -0.15 -7.38 16 14 H 0.09 2.54 8.06 -52.48 -0.42 2.12 16 15 C 0.02 0.73 5.23 -17.43 -0.09 0.63 16 16 N -0.91 -28.23 13.97 55.49 0.78 -27.45 16 17 Si 0.88 23.21 24.35 -169.99 -4.14 19.07 16 18 H -0.29 -7.47 6.62 56.52 0.37 -7.09 16 19 H -0.30 -8.14 7.11 56.52 0.40 -7.74 16 20 H -0.27 -7.08 6.64 56.52 0.38 -6.70 16 21 C 0.15 2.95 5.50 -3.71 -0.02 2.93 16 22 C -0.12 -1.90 2.67 -90.50 -0.24 -2.14 16 23 H 0.09 1.44 8.14 -51.93 -0.42 1.02 16 24 C -0.14 -1.87 9.05 37.16 0.34 -1.53 16 25 N -0.20 -3.20 12.04 32.85 0.40 -2.81 16 26 N -0.07 -0.98 13.78 60.35 0.83 -0.15 16 27 N -0.36 -3.87 3.63 -56.85 -0.21 -4.07 16 28 C 0.12 0.67 6.87 -4.04 -0.03 0.64 16 29 C -0.17 -0.88 10.24 37.16 0.38 -0.50 16 30 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 31 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.12 1.28 6.43 -51.93 -0.33 0.95 16 34 H 0.08 0.47 7.82 -51.93 -0.41 0.06 16 35 H 0.41 6.82 6.42 -40.82 -0.26 6.56 16 36 H 0.07 1.41 8.14 -51.92 -0.42 0.99 16 37 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 38 H 0.07 1.77 4.49 -51.93 -0.23 1.54 16 39 H 0.02 0.56 6.67 -51.93 -0.35 0.22 16 40 H 0.26 7.75 8.31 -40.82 -0.34 7.41 16 41 H 0.07 1.29 7.93 -51.93 -0.41 0.88 16 42 H 0.02 0.39 6.65 -51.93 -0.35 0.04 16 43 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 44 H 0.05 0.69 7.53 -51.93 -0.39 0.30 16 45 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 46 H 0.11 0.49 8.14 -51.93 -0.42 0.07 16 47 H 0.10 0.34 7.76 -51.93 -0.40 -0.07 16 48 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 49 H 0.08 0.23 8.14 -51.93 -0.42 -0.19 16 50 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 LS Contribution 390.12 15.07 5.88 5.88 Total: -1.00 -33.92 390.12 -6.39 -40.30 By element: Atomic # 1 Polarization: 10.75 SS G_CDS: -8.21 Total: 2.54 kcal Atomic # 6 Polarization: 3.26 SS G_CDS: -1.11 Total: 2.15 kcal Atomic # 7 Polarization: -61.99 SS G_CDS: 1.12 Total: -60.87 kcal Atomic # 8 Polarization: -9.14 SS G_CDS: 0.08 Total: -9.06 kcal Atomic # 14 Polarization: 23.21 SS G_CDS: -4.14 Total: 19.07 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -33.92 -6.39 -40.30 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000942725608.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.386 kcal (2) G-P(sol) polarization free energy of solvation -33.915 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.471 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.386 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.301 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.085 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds