Wall clock time and date at job start Tue Mar 31 2020 20:03:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.50699 * 109.47322 * 2 1 4 4 C 1.36595 * 126.58002 * 270.02457 * 3 2 1 5 5 C 1.47532 * 125.77006 * 359.95616 * 4 3 2 6 6 O 1.21597 * 119.99772 * 0.02562 * 5 4 3 7 7 N 1.34778 * 119.99857 * 180.02562 * 5 4 3 8 8 C 1.46493 * 119.99649 * 180.02562 * 7 5 4 9 9 H 1.09004 * 109.45349 * 35.02864 * 8 7 5 10 10 C 1.53041 * 109.43295 * 275.04784 * 8 7 5 11 11 C 1.53193 * 109.33907 * 301.31760 * 10 8 7 12 12 N 1.46929 * 108.77142 * 305.37558 * 11 10 8 13 13 C 1.36941 * 120.62874 * 233.62976 * 12 11 10 14 14 H 1.08005 * 119.99741 * 152.61023 * 13 12 11 15 15 C 1.38808 * 120.00144 * 332.61109 * 13 12 11 16 16 N 1.31622 * 120.00074 * 159.37218 * 15 13 12 17 17 Si 1.86800 * 120.00103 * 339.36867 * 15 13 12 18 18 H 1.48504 * 109.46685 * 92.92930 * 17 15 13 19 19 H 1.48501 * 109.47365 * 212.93054 * 17 15 13 20 20 H 1.48499 * 109.47156 * 332.93104 * 17 15 13 21 21 C 1.46923 * 118.73867 * 53.61419 * 12 11 10 22 22 C 1.53039 * 109.46106 * 154.99783 * 8 7 5 23 23 H 1.09004 * 109.50106 * 178.63299 * 22 8 7 24 24 C 1.53004 * 109.49660 * 298.70181 * 22 8 7 25 25 N 1.34401 * 108.46110 * 180.22038 * 4 3 2 26 26 N 1.28761 * 109.51748 * 359.58760 * 25 4 3 27 27 N 1.34808 * 126.58132 * 89.99999 * 3 2 1 28 28 C 1.46496 * 126.59533 * 0.05514 * 27 3 2 29 29 C 1.52998 * 109.47486 * 90.00066 * 28 27 3 30 30 H 1.09002 * 109.46771 * 300.00759 * 1 2 3 31 31 H 1.09000 * 109.46894 * 59.99980 * 1 2 3 32 32 H 1.08991 * 109.47162 * 180.02562 * 1 2 3 33 33 H 1.08998 * 109.46916 * 239.99988 * 2 1 3 34 34 H 1.09000 * 109.46894 * 120.00020 * 2 1 3 35 35 H 0.96994 * 119.99977 * 359.97438 * 7 5 4 36 36 H 1.09007 * 109.47368 * 181.36198 * 10 8 7 37 37 H 1.09000 * 109.52635 * 61.29756 * 10 8 7 38 38 H 1.09001 * 109.58732 * 185.59372 * 11 10 8 39 39 H 1.08990 * 109.58827 * 65.16369 * 11 10 8 40 40 H 0.96994 * 119.99948 * 179.97438 * 16 15 13 41 41 H 1.08999 * 109.58854 * 186.60263 * 21 12 11 42 42 H 1.09000 * 109.70605 * 66.24448 * 21 12 11 43 43 H 1.09004 * 109.46910 * 179.97438 * 24 22 8 44 44 H 1.08990 * 109.46820 * 59.93345 * 24 22 8 45 45 H 1.08997 * 109.46800 * 299.93410 * 24 22 8 46 46 H 1.09004 * 109.47255 * 210.00080 * 28 27 3 47 47 H 1.09000 * 109.47216 * 329.99862 * 28 27 3 48 48 H 1.09000 * 109.47059 * 59.99700 * 29 28 27 49 49 H 1.08994 * 109.47549 * 180.02562 * 29 28 27 50 50 H 1.09004 * 109.46885 * 300.00241 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.3034 2.1884 -1.0969 5 6 2.1545 1.7666 -2.5028 6 8 1.7588 0.6466 -2.7628 7 7 2.4572 2.6226 -3.4988 8 6 2.3089 2.2039 -4.8948 9 1 1.4485 1.5408 -4.9854 10 6 3.5723 1.4648 -5.3416 11 6 4.7839 2.3884 -5.1810 12 7 4.5260 3.6378 -5.9100 13 6 5.4181 4.0992 -6.8409 14 1 5.0747 4.7149 -7.6591 15 6 6.7636 3.7757 -6.7329 16 7 7.5456 3.8519 -7.7889 17 14 7.4646 3.2323 -5.0889 18 1 7.4202 1.7507 -4.9974 19 1 8.8714 3.6935 -4.9738 20 1 6.6592 3.8205 -3.9886 21 6 3.2928 4.3823 -5.6214 22 6 2.0978 3.4364 -5.7771 23 1 2.0116 3.1276 -6.8189 24 6 0.8173 4.1568 -5.3503 25 7 2.7340 3.3910 -0.6789 26 7 2.7396 3.4224 0.6083 27 7 2.3003 2.1782 1.0825 28 6 2.1600 1.7781 2.4848 29 6 3.4715 1.1590 2.9722 30 1 -0.3633 0.5140 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0276 0.0005 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 2.7725 3.5161 -3.2913 36 1 3.4725 1.1741 -6.3875 37 1 3.7098 0.5744 -4.7281 38 1 5.6701 1.9031 -5.5899 39 1 4.9391 2.6071 -4.1246 40 1 8.4859 3.6262 -7.7133 41 1 3.1950 5.2126 -6.3209 42 1 3.3249 4.7656 -4.6016 43 1 0.6676 5.0348 -5.9787 44 1 0.9040 4.4653 -4.3086 45 1 -0.0324 3.4829 -5.4601 46 1 1.9241 2.6532 3.0905 47 1 1.3571 1.0465 2.5753 48 1 4.2743 1.8906 2.8817 49 1 3.3670 0.8609 4.0154 50 1 3.7073 0.2840 2.3665 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000942725608.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:03:01 Heat of formation + Delta-G solvation = 47.660485 kcal Electronic energy + Delta-G solvation = -30697.211406 eV Core-core repulsion = 26760.950231 eV Total energy + Delta-G solvation = -3936.261175 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -43.38702 -41.14018 -39.19270 -36.83421 -36.09431 -34.79493 -34.01756 -33.38694 -32.21772 -31.39395 -30.67129 -27.79844 -27.12084 -25.83186 -25.02341 -24.27565 -23.51009 -23.14951 -21.80607 -21.33346 -20.20870 -19.17403 -18.71428 -17.38344 -17.33436 -17.08314 -16.72712 -16.22912 -15.92614 -15.74467 -15.65338 -15.24766 -15.17564 -14.93704 -14.80226 -14.78606 -14.21760 -14.02787 -13.82717 -13.76825 -13.47674 -13.36999 -13.18329 -13.16894 -12.91883 -12.81859 -12.71461 -12.32437 -12.28006 -12.24003 -12.10569 -11.94457 -11.84272 -11.68214 -11.44752 -11.28691 -11.21984 -11.03485 -10.72837 -10.31649 -9.95365 -8.93013 -8.18724 -5.48737 0.08505 0.58866 1.06763 1.24215 1.35747 1.44401 2.14587 2.24616 2.37864 3.03213 3.12359 3.31521 3.37164 3.50883 3.66408 3.76163 3.92278 3.93962 4.08498 4.12117 4.23369 4.24955 4.27764 4.40325 4.42088 4.50397 4.55950 4.57442 4.63171 4.73231 4.75383 4.87938 4.89472 4.91942 4.94246 4.95967 5.03589 5.12057 5.14719 5.17444 5.23103 5.29820 5.30959 5.44852 5.50973 5.59605 5.85743 6.12005 6.43934 6.87588 6.89778 7.14544 7.60814 8.02258 9.01246 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.013686 B = 0.003701 C = 0.003277 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2045.364022 B = 7563.758396 C = 8543.071836 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.063 4.063 3 C 0.137 3.863 4 C -0.131 4.131 5 C 0.604 3.396 6 O -0.553 6.553 7 N -0.701 5.701 8 C 0.167 3.833 9 H 0.096 0.904 10 C -0.137 4.137 11 C 0.130 3.870 12 N -0.616 5.616 13 C -0.241 4.241 14 H 0.061 0.939 15 C -0.029 4.029 16 N -0.954 5.954 17 Si 0.937 3.063 18 H -0.283 1.283 19 H -0.310 1.310 20 H -0.269 1.269 21 C 0.149 3.851 22 C -0.107 4.107 23 H 0.085 0.915 24 C -0.134 4.134 25 N -0.230 5.230 26 N -0.093 5.093 27 N -0.347 5.347 28 C 0.103 3.897 29 C -0.169 4.169 30 H 0.066 0.934 31 H 0.040 0.960 32 H 0.089 0.911 33 H 0.098 0.902 34 H 0.113 0.887 35 H 0.406 0.594 36 H 0.075 0.925 37 H 0.064 0.936 38 H 0.044 0.956 39 H 0.020 0.980 40 H 0.261 0.739 41 H 0.063 0.937 42 H 0.029 0.971 43 H 0.067 0.933 44 H 0.052 0.948 45 H 0.066 0.934 46 H 0.119 0.881 47 H 0.136 0.864 48 H 0.047 0.953 49 H 0.115 0.885 50 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.407 -9.128 23.818 31.455 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.102 4.102 3 C -0.003 4.003 4 C -0.271 4.271 5 C 0.389 3.611 6 O -0.432 6.432 7 N -0.351 5.351 8 C 0.063 3.937 9 H 0.113 0.887 10 C -0.178 4.178 11 C 0.005 3.995 12 N -0.340 5.340 13 C -0.370 4.370 14 H 0.079 0.921 15 C -0.224 4.224 16 N -0.600 5.600 17 Si 0.768 3.232 18 H -0.210 1.210 19 H -0.239 1.239 20 H -0.194 1.194 21 C 0.024 3.976 22 C -0.127 4.127 23 H 0.103 0.897 24 C -0.191 4.191 25 N -0.102 5.102 26 N -0.072 5.072 27 N -0.133 5.133 28 C -0.016 4.016 29 C -0.227 4.227 30 H 0.085 0.915 31 H 0.060 0.940 32 H 0.108 0.892 33 H 0.117 0.883 34 H 0.131 0.869 35 H 0.242 0.758 36 H 0.093 0.907 37 H 0.083 0.917 38 H 0.063 0.937 39 H 0.038 0.962 40 H 0.070 0.930 41 H 0.082 0.918 42 H 0.047 0.953 43 H 0.086 0.914 44 H 0.071 0.929 45 H 0.085 0.915 46 H 0.138 0.862 47 H 0.154 0.846 48 H 0.066 0.934 49 H 0.133 0.867 50 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -18.041 -8.477 24.017 31.211 hybrid contribution 1.212 -0.319 0.150 1.262 sum -16.829 -8.797 24.166 30.735 Atomic orbital electron populations 1.21643 0.91947 1.03912 1.01896 1.20609 0.98062 0.85331 1.06184 1.22337 0.95246 0.96949 0.85754 1.21374 1.16791 0.93086 0.95868 1.16866 0.76909 0.84414 0.82931 1.90714 1.48630 1.19898 1.83937 1.45954 1.66050 1.17242 1.05866 1.20874 0.97330 0.96226 0.79247 0.88654 1.22287 0.95642 0.97934 1.01889 1.21200 0.97052 0.87171 0.94126 1.44472 1.21785 1.22017 1.45771 1.18913 0.87719 1.28767 1.01645 0.92125 1.25760 0.96554 1.00821 0.99216 1.69938 1.06278 1.54283 1.29519 0.86064 0.76391 0.77494 0.83289 1.20997 1.23879 1.19405 1.21145 0.84419 0.93706 0.98343 1.21796 0.96033 0.95141 0.99775 0.89679 1.21690 0.95469 1.00631 1.01340 1.74610 1.11490 1.19177 1.04970 1.81875 1.21173 1.01119 1.03021 1.50828 1.43671 1.09855 1.08924 1.22553 1.01622 1.03653 0.73725 1.22204 0.95370 1.00926 1.04165 0.91457 0.94030 0.89236 0.88342 0.86890 0.75780 0.90679 0.91694 0.93734 0.96171 0.93002 0.91809 0.95294 0.91426 0.92885 0.91468 0.86248 0.84614 0.93393 0.86665 0.91950 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.65 9.90 71.98 0.71 -0.94 16 2 C -0.06 -0.92 5.43 29.85 0.16 -0.76 16 3 C 0.14 2.95 6.27 41.72 0.26 3.21 16 4 C -0.13 -3.81 6.99 40.82 0.29 -3.52 16 5 C 0.60 18.88 7.78 86.69 0.67 19.55 16 6 O -0.55 -17.95 14.38 -4.02 -0.06 -18.01 16 7 N -0.70 -22.12 3.59 -445.58 -1.60 -23.72 16 8 C 0.17 5.25 2.21 45.02 0.10 5.35 16 9 H 0.10 2.81 7.58 -2.38 -0.02 2.79 16 10 C -0.14 -5.05 5.77 30.67 0.18 -4.88 16 11 C 0.13 5.84 3.94 86.36 0.34 6.18 16 12 N -0.62 -29.37 2.77 -699.10 -1.94 -31.31 16 13 C -0.24 -13.80 10.03 84.03 0.84 -12.96 16 14 H 0.06 3.73 8.06 -2.91 -0.02 3.71 16 15 C -0.03 -1.72 5.23 84.86 0.44 -1.27 16 16 N -0.95 -61.01 13.97 21.65 0.30 -60.71 16 17 Si 0.94 49.24 24.35 68.60 1.67 50.91 16 18 H -0.28 -14.34 6.62 99.48 0.66 -13.68 16 19 H -0.31 -16.42 7.11 99.48 0.71 -15.71 16 20 H -0.27 -13.92 6.64 99.48 0.66 -13.26 16 21 C 0.15 5.65 5.50 86.36 0.48 6.13 16 22 C -0.11 -3.25 2.67 -10.71 -0.03 -3.28 16 23 H 0.08 2.67 8.14 -2.39 -0.02 2.65 16 24 C -0.13 -3.17 9.05 71.98 0.65 -2.52 16 25 N -0.23 -7.29 12.04 -49.99 -0.60 -7.89 16 26 N -0.09 -2.58 13.78 37.02 0.51 -2.07 16 27 N -0.35 -6.66 3.63 -333.79 -1.21 -7.87 16 28 C 0.10 0.82 6.87 86.38 0.59 1.41 16 29 C -0.17 -1.21 10.24 71.98 0.74 -0.48 16 30 H 0.07 0.57 8.14 -2.39 -0.02 0.55 16 31 H 0.04 0.73 8.14 -2.39 -0.02 0.71 16 32 H 0.09 0.76 8.14 -2.39 -0.02 0.74 16 33 H 0.10 1.94 6.43 -2.39 -0.02 1.92 16 34 H 0.11 0.86 7.82 -2.39 -0.02 0.84 16 35 H 0.41 13.31 6.42 -92.71 -0.59 12.71 16 36 H 0.07 2.76 8.14 -2.38 -0.02 2.74 16 37 H 0.06 2.32 8.14 -2.39 -0.02 2.30 16 38 H 0.04 2.24 4.49 -2.39 -0.01 2.23 16 39 H 0.02 0.93 6.67 -2.39 -0.02 0.92 16 40 H 0.26 15.94 8.31 -92.71 -0.77 15.17 16 41 H 0.06 2.45 7.93 -2.39 -0.02 2.43 16 42 H 0.03 1.08 6.65 -2.39 -0.02 1.06 16 43 H 0.07 1.48 8.14 -2.38 -0.02 1.46 16 44 H 0.05 1.27 7.53 -2.39 -0.02 1.26 16 45 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 46 H 0.12 0.70 8.14 -2.38 -0.02 0.68 16 47 H 0.14 0.19 7.76 -2.39 -0.02 0.17 16 48 H 0.05 0.58 8.14 -2.39 -0.02 0.56 16 49 H 0.11 0.15 8.14 -2.39 -0.02 0.13 16 50 H 0.06 0.51 8.14 -2.38 -0.02 0.49 16 Total: -1.00 -76.24 390.12 3.76 -72.49 By element: Atomic # 1 Polarization: 16.70 SS G_CDS: 0.25 Total: 16.96 kcal Atomic # 6 Polarization: 4.79 SS G_CDS: 6.43 Total: 11.22 kcal Atomic # 7 Polarization: -129.03 SS G_CDS: -4.54 Total: -133.57 kcal Atomic # 8 Polarization: -17.95 SS G_CDS: -0.06 Total: -18.01 kcal Atomic # 14 Polarization: 49.24 SS G_CDS: 1.67 Total: 50.91 kcal Total: -76.24 3.76 -72.49 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000942725608.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.146 kcal (2) G-P(sol) polarization free energy of solvation -76.241 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.905 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.755 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.486 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.660 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds