Wall clock time and date at job start Tue Mar 31 2020 20:03:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50697 * 109.47289 * 2 1 4 4 C 1.36595 * 126.57587 * 270.02348 * 3 2 1 5 5 C 1.47523 * 125.77707 * 359.95564 * 4 3 2 6 6 O 1.21603 * 119.99515 * 359.97438 * 5 4 3 7 7 N 1.34775 * 120.00245 * 180.02562 * 5 4 3 8 8 C 1.46499 * 119.99884 * 179.97438 * 7 5 4 9 9 H 1.08999 * 109.45048 * 324.96878 * 8 7 5 10 10 C 1.53040 * 109.45792 * 84.93194 * 8 7 5 11 11 C 1.53193 * 109.31338 * 181.38391 * 10 8 7 12 12 N 1.46919 * 108.77758 * 305.36673 * 11 10 8 13 13 C 1.36933 * 120.63221 * 233.63258 * 12 11 10 14 14 H 1.08002 * 120.00309 * 152.60620 * 13 12 11 15 15 C 1.38815 * 119.99963 * 332.60247 * 13 12 11 16 16 N 1.31622 * 119.99957 * 159.37242 * 15 13 12 17 17 Si 1.86792 * 120.00051 * 339.37541 * 15 13 12 18 18 H 1.48496 * 109.47417 * 92.92516 * 17 15 13 19 19 H 1.48494 * 109.47176 * 212.92895 * 17 15 13 20 20 H 1.48506 * 109.47195 * 332.92773 * 17 15 13 21 21 C 1.46932 * 118.73666 * 53.60575 * 12 11 10 22 22 C 1.53038 * 109.46211 * 205.00019 * 8 7 5 23 23 H 1.08996 * 109.49505 * 298.57296 * 22 8 7 24 24 C 1.52997 * 109.49649 * 58.63197 * 22 8 7 25 25 N 1.34408 * 108.45500 * 180.22215 * 4 3 2 26 26 N 1.28755 * 109.52250 * 359.58615 * 25 4 3 27 27 N 1.34808 * 126.58225 * 90.00021 * 3 2 1 28 28 C 1.46503 * 126.59256 * 0.05107 * 27 3 2 29 29 C 1.52999 * 109.46967 * 90.00374 * 28 27 3 30 30 H 1.09002 * 109.47023 * 60.00290 * 1 2 3 31 31 H 1.08998 * 109.47408 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.47466 * 300.00398 * 1 2 3 33 33 H 1.09000 * 109.47466 * 239.99601 * 2 1 3 34 34 H 1.09004 * 109.46750 * 120.00439 * 2 1 3 35 35 H 0.96997 * 119.99735 * 0.02562 * 7 5 4 36 36 H 1.09000 * 109.50225 * 301.34053 * 10 8 7 37 37 H 1.09001 * 109.49957 * 61.43489 * 10 8 7 38 38 H 1.09002 * 109.58504 * 185.57940 * 11 10 8 39 39 H 1.09001 * 109.58735 * 65.15770 * 11 10 8 40 40 H 0.97001 * 120.00136 * 179.97438 * 16 15 13 41 41 H 1.09003 * 109.58455 * 186.60238 * 21 12 11 42 42 H 1.09001 * 109.58256 * 66.18195 * 21 12 11 43 43 H 1.09002 * 109.46958 * 59.99949 * 24 22 8 44 44 H 1.09002 * 109.47448 * 179.97438 * 24 22 8 45 45 H 1.09003 * 109.47211 * 300.00543 * 24 22 8 46 46 H 1.09001 * 109.47067 * 210.00570 * 28 27 3 47 47 H 1.09001 * 109.47479 * 330.00086 * 28 27 3 48 48 H 1.09001 * 109.47387 * 300.00000 * 29 28 27 49 49 H 1.09004 * 109.47254 * 60.00110 * 29 28 27 50 50 H 1.09000 * 109.46918 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.3033 2.1883 -1.0969 5 6 2.1545 1.7666 -2.5028 6 8 1.7597 0.6462 -2.7628 7 7 2.4572 2.6226 -3.4988 8 6 2.3100 2.2035 -4.8948 9 1 2.5628 1.1470 -4.9852 10 6 0.8629 2.4215 -5.3427 11 6 0.7045 1.9502 -6.7916 12 7 1.7033 2.6349 -7.6236 13 6 1.3235 3.3253 -8.7434 14 1 1.9184 4.1560 -9.0934 15 6 0.1739 2.9575 -9.4290 16 7 -0.4187 3.8180 -10.2296 17 14 -0.5322 1.2414 -9.2154 18 1 -1.5535 1.2569 -8.1376 19 1 -1.1612 0.8031 -10.4872 20 1 0.5570 0.2997 -8.8516 21 6 3.1174 2.5651 -7.2308 22 6 3.2488 3.0296 -5.7769 23 1 2.9807 4.0837 -5.7061 24 6 4.6920 2.8372 -5.3071 25 7 2.7339 3.3910 -0.6789 26 7 2.7396 3.4224 0.6082 27 7 2.3002 2.1782 1.0825 28 6 2.1598 1.7781 2.4848 29 6 3.4713 1.1590 2.9722 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3634 0.5139 0.8899 33 1 1.8934 -0.5139 -0.8899 34 1 1.8933 -0.5139 0.8900 35 1 2.7732 3.5158 -3.2913 36 1 0.1930 1.8512 -4.6992 37 1 0.6172 3.4814 -5.2760 38 1 -0.2965 2.1937 -7.1477 39 1 0.8613 0.8728 -6.8447 40 1 -1.2218 3.5608 -10.7090 41 1 3.7085 3.2144 -7.8767 42 1 3.4710 1.5379 -7.3196 43 1 4.9601 1.7831 -5.3791 44 1 5.3604 3.4254 -5.9359 45 1 4.7839 3.1655 -4.2717 46 1 1.9239 2.6531 3.0905 47 1 1.3569 1.0465 2.5753 48 1 3.7073 0.2840 2.3666 49 1 4.2742 1.8907 2.8818 50 1 3.3670 0.8617 4.0157 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000942725609.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:03:07 Heat of formation + Delta-G solvation = 68.349591 kcal Electronic energy + Delta-G solvation = -30049.133384 eV Core-core repulsion = 26113.769356 eV Total energy + Delta-G solvation = -3935.364028 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -42.51509 -39.67953 -37.78782 -36.14405 -34.73272 -34.08383 -32.66286 -31.57287 -30.97080 -30.47674 -29.57966 -26.35401 -25.62238 -24.83711 -24.08614 -23.24918 -21.99880 -21.37478 -20.70312 -20.31533 -19.57963 -17.92591 -16.80839 -16.40550 -16.36711 -16.02425 -15.20989 -15.00281 -14.88206 -14.61256 -14.38047 -14.26920 -14.03738 -13.57172 -13.42449 -13.32530 -13.06092 -13.05028 -12.79788 -12.67830 -12.62410 -12.18557 -12.06185 -11.90957 -11.74697 -11.60827 -11.59780 -11.48142 -11.15689 -10.95008 -10.55797 -10.50020 -10.46827 -10.14600 -10.00787 -9.95430 -9.67510 -9.45951 -9.34562 -8.73046 -8.54636 -6.94762 -5.91064 -3.26856 0.90293 1.61110 1.72960 3.25529 3.32767 3.37803 3.53211 3.57165 3.89607 3.94647 4.26592 4.29052 4.49331 4.55057 4.57737 4.73384 4.88149 4.92122 4.96237 5.03436 5.07037 5.16034 5.28453 5.32245 5.40908 5.42608 5.49227 5.51027 5.59887 5.76558 5.79843 5.90638 5.92995 5.95698 6.09491 6.15081 6.16222 6.19922 6.35079 6.43106 6.47141 6.64917 6.69084 6.76238 6.80352 6.98926 7.57407 7.84391 7.99772 8.30671 8.36452 8.97553 9.76007 10.13549 11.24807 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.020195 B = 0.002813 C = 0.002620 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1386.159444 B = 9953.151486 C =10684.138465 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.065 4.065 3 C 0.126 3.874 4 C -0.101 4.101 5 C 0.602 3.398 6 O -0.538 6.538 7 N -0.705 5.705 8 C 0.158 3.842 9 H 0.085 0.915 10 C -0.142 4.142 11 C 0.129 3.871 12 N -0.607 5.607 13 C -0.259 4.259 14 H 0.086 0.914 15 C 0.023 3.977 16 N -0.909 5.909 17 Si 0.882 3.118 18 H -0.288 1.288 19 H -0.304 1.304 20 H -0.269 1.269 21 C 0.158 3.842 22 C -0.116 4.116 23 H 0.077 0.923 24 C -0.143 4.143 25 N -0.203 5.203 26 N -0.070 5.070 27 N -0.361 5.361 28 C 0.116 3.884 29 C -0.171 4.171 30 H 0.068 0.932 31 H 0.071 0.929 32 H 0.048 0.952 33 H 0.118 0.882 34 H 0.077 0.923 35 H 0.404 0.596 36 H 0.059 0.941 37 H 0.066 0.934 38 H 0.075 0.925 39 H 0.028 0.972 40 H 0.262 0.738 41 H 0.068 0.932 42 H 0.025 0.975 43 H 0.052 0.948 44 H 0.056 0.944 45 H 0.050 0.950 46 H 0.107 0.893 47 H 0.101 0.899 48 H 0.065 0.935 49 H 0.069 0.931 50 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.701 -7.194 28.076 29.747 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.105 4.105 3 C -0.012 4.012 4 C -0.240 4.240 5 C 0.386 3.614 6 O -0.414 6.414 7 N -0.354 5.354 8 C 0.055 3.945 9 H 0.103 0.897 10 C -0.182 4.182 11 C 0.003 3.997 12 N -0.330 5.330 13 C -0.387 4.387 14 H 0.104 0.896 15 C -0.176 4.176 16 N -0.552 5.552 17 Si 0.712 3.288 18 H -0.216 1.216 19 H -0.232 1.232 20 H -0.194 1.194 21 C 0.032 3.968 22 C -0.137 4.137 23 H 0.095 0.905 24 C -0.201 4.201 25 N -0.076 5.076 26 N -0.049 5.049 27 N -0.147 5.147 28 C -0.005 4.005 29 C -0.230 4.230 30 H 0.087 0.913 31 H 0.090 0.910 32 H 0.067 0.933 33 H 0.136 0.864 34 H 0.095 0.905 35 H 0.239 0.761 36 H 0.077 0.923 37 H 0.085 0.915 38 H 0.093 0.907 39 H 0.045 0.955 40 H 0.072 0.928 41 H 0.086 0.914 42 H 0.043 0.957 43 H 0.071 0.929 44 H 0.075 0.925 45 H 0.069 0.931 46 H 0.125 0.875 47 H 0.120 0.880 48 H 0.084 0.916 49 H 0.088 0.912 50 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 6.799 -6.536 28.151 29.689 hybrid contribution -0.732 -1.288 0.210 1.496 sum 6.067 -7.823 28.362 30.040 Atomic orbital electron populations 1.21672 0.93013 1.02945 1.02407 1.20496 0.97373 0.87247 1.05349 1.21955 0.96645 0.96229 0.86359 1.21336 1.14796 0.92253 0.95659 1.16722 0.77574 0.84748 0.82369 1.90764 1.47319 1.19866 1.83498 1.46034 1.66211 1.16940 1.06206 1.21059 0.95920 0.99614 0.77947 0.89681 1.22414 0.95304 1.02066 0.98424 1.21320 0.94521 0.94923 0.88955 1.44403 1.00516 1.61257 1.26808 1.18915 1.09401 1.08871 1.01529 0.89649 1.25272 0.97704 0.97660 0.96952 1.69841 1.19667 1.33751 1.31913 0.86964 0.78835 0.87365 0.75610 1.21605 1.23225 1.19442 1.20925 0.86375 0.98246 0.91289 1.21967 0.93787 1.00466 0.97506 0.90458 1.21771 0.96179 1.01587 1.00527 1.74607 1.10813 1.18069 1.04141 1.81967 1.20305 0.99166 1.03446 1.50474 1.45664 1.11138 1.07448 1.21992 1.00151 1.02120 0.76269 1.22197 0.96527 1.01819 1.02416 0.91314 0.91022 0.93250 0.86373 0.90470 0.76059 0.92255 0.91532 0.90744 0.95451 0.92813 0.91383 0.95662 0.92919 0.92493 0.93121 0.87519 0.88041 0.91618 0.91174 0.89689 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.12 9.89 37.16 0.37 -0.76 16 2 C -0.07 -0.54 5.43 -27.88 -0.15 -0.69 16 3 C 0.13 1.35 6.27 -81.88 -0.51 0.84 16 4 C -0.10 -1.36 6.99 -83.55 -0.58 -1.94 16 5 C 0.60 9.06 7.78 -12.48 -0.10 8.96 16 6 O -0.54 -8.99 14.38 5.28 0.08 -8.91 16 7 N -0.70 -10.35 4.36 -54.81 -0.24 -10.59 16 8 C 0.16 2.62 1.88 -67.89 -0.13 2.50 16 9 H 0.09 1.51 7.58 -51.93 -0.39 1.12 16 10 C -0.14 -2.69 5.65 -26.61 -0.15 -2.84 16 11 C 0.13 2.90 4.20 -3.71 -0.02 2.89 16 12 N -0.61 -14.47 2.77 -172.32 -0.48 -14.94 16 13 C -0.26 -7.25 10.03 -15.06 -0.15 -7.41 16 14 H 0.09 2.54 8.06 -52.49 -0.42 2.11 16 15 C 0.02 0.67 5.23 -17.43 -0.09 0.58 16 16 N -0.91 -28.10 13.97 55.49 0.78 -27.32 16 17 Si 0.88 22.80 24.35 -169.99 -4.14 18.66 16 18 H -0.29 -7.24 6.62 56.52 0.37 -6.87 16 19 H -0.30 -7.97 7.11 56.52 0.40 -7.57 16 20 H -0.27 -6.85 6.64 56.52 0.38 -6.48 16 21 C 0.16 3.08 5.80 -3.71 -0.02 3.06 16 22 C -0.12 -1.88 2.46 -90.50 -0.22 -2.10 16 23 H 0.08 1.30 8.14 -51.93 -0.42 0.88 16 24 C -0.14 -1.89 9.03 37.16 0.34 -1.55 16 25 N -0.20 -2.83 12.04 32.85 0.40 -2.43 16 26 N -0.07 -0.88 13.78 60.35 0.83 -0.05 16 27 N -0.36 -3.42 3.63 -56.85 -0.21 -3.62 16 28 C 0.12 0.55 6.87 -4.04 -0.03 0.52 16 29 C -0.17 -0.65 10.24 37.16 0.38 -0.27 16 30 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 32 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 33 H 0.12 1.20 6.43 -51.93 -0.33 0.87 16 34 H 0.08 0.41 7.82 -51.93 -0.41 0.00 16 35 H 0.40 5.48 7.99 -40.82 -0.33 5.16 16 36 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 37 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 38 H 0.07 1.83 4.49 -51.93 -0.23 1.60 16 39 H 0.03 0.62 7.08 -51.93 -0.37 0.25 16 40 H 0.26 7.71 8.31 -40.82 -0.34 7.37 16 41 H 0.07 1.31 7.93 -51.93 -0.41 0.90 16 42 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 43 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 44 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 45 H 0.05 0.62 7.36 -51.93 -0.38 0.24 16 46 H 0.11 0.40 8.14 -51.93 -0.42 -0.03 16 47 H 0.10 0.27 7.76 -51.93 -0.40 -0.13 16 48 H 0.06 0.28 8.14 -51.93 -0.42 -0.15 16 49 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 50 H 0.08 0.13 8.14 -51.93 -0.42 -0.29 16 LS Contribution 394.04 15.07 5.94 5.94 Total: -1.00 -33.69 394.04 -6.48 -40.17 By element: Atomic # 1 Polarization: 9.68 SS G_CDS: -8.36 Total: 1.32 kcal Atomic # 6 Polarization: 2.86 SS G_CDS: -1.07 Total: 1.79 kcal Atomic # 7 Polarization: -60.04 SS G_CDS: 1.08 Total: -58.96 kcal Atomic # 8 Polarization: -8.99 SS G_CDS: 0.08 Total: -8.91 kcal Atomic # 14 Polarization: 22.80 SS G_CDS: -4.14 Total: 18.66 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -33.69 -6.48 -40.17 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000942725609.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.516 kcal (2) G-P(sol) polarization free energy of solvation -33.687 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.830 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.480 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.167 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.350 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds