Wall clock time and date at job start Tue Mar 31 2020 20:03:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50697 * 109.47289 * 2 1 4 4 C 1.36595 * 126.57587 * 270.02348 * 3 2 1 5 5 C 1.47523 * 125.77707 * 359.95564 * 4 3 2 6 6 O 1.21603 * 119.99515 * 359.97438 * 5 4 3 7 7 N 1.34775 * 120.00245 * 180.02562 * 5 4 3 8 8 C 1.46499 * 119.99884 * 179.97438 * 7 5 4 9 9 H 1.08999 * 109.45048 * 324.96878 * 8 7 5 10 10 C 1.53040 * 109.45792 * 84.93194 * 8 7 5 11 11 C 1.53193 * 109.31338 * 181.38391 * 10 8 7 12 12 N 1.46919 * 108.77758 * 305.36673 * 11 10 8 13 13 C 1.36933 * 120.63221 * 233.63258 * 12 11 10 14 14 H 1.08002 * 120.00309 * 152.60620 * 13 12 11 15 15 C 1.38815 * 119.99963 * 332.60247 * 13 12 11 16 16 N 1.31622 * 119.99957 * 159.37242 * 15 13 12 17 17 Si 1.86792 * 120.00051 * 339.37541 * 15 13 12 18 18 H 1.48496 * 109.47417 * 92.92516 * 17 15 13 19 19 H 1.48494 * 109.47176 * 212.92895 * 17 15 13 20 20 H 1.48506 * 109.47195 * 332.92773 * 17 15 13 21 21 C 1.46932 * 118.73666 * 53.60575 * 12 11 10 22 22 C 1.53038 * 109.46211 * 205.00019 * 8 7 5 23 23 H 1.08996 * 109.49505 * 298.57296 * 22 8 7 24 24 C 1.52997 * 109.49649 * 58.63197 * 22 8 7 25 25 N 1.34408 * 108.45500 * 180.22215 * 4 3 2 26 26 N 1.28755 * 109.52250 * 359.58615 * 25 4 3 27 27 N 1.34808 * 126.58225 * 90.00021 * 3 2 1 28 28 C 1.46503 * 126.59256 * 0.05107 * 27 3 2 29 29 C 1.52999 * 109.46967 * 90.00374 * 28 27 3 30 30 H 1.09002 * 109.47023 * 60.00290 * 1 2 3 31 31 H 1.08998 * 109.47408 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.47466 * 300.00398 * 1 2 3 33 33 H 1.09000 * 109.47466 * 239.99601 * 2 1 3 34 34 H 1.09004 * 109.46750 * 120.00439 * 2 1 3 35 35 H 0.96997 * 119.99735 * 0.02562 * 7 5 4 36 36 H 1.09000 * 109.50225 * 301.34053 * 10 8 7 37 37 H 1.09001 * 109.49957 * 61.43489 * 10 8 7 38 38 H 1.09002 * 109.58504 * 185.57940 * 11 10 8 39 39 H 1.09001 * 109.58735 * 65.15770 * 11 10 8 40 40 H 0.97001 * 120.00136 * 179.97438 * 16 15 13 41 41 H 1.09003 * 109.58455 * 186.60238 * 21 12 11 42 42 H 1.09001 * 109.58256 * 66.18195 * 21 12 11 43 43 H 1.09002 * 109.46958 * 59.99949 * 24 22 8 44 44 H 1.09002 * 109.47448 * 179.97438 * 24 22 8 45 45 H 1.09003 * 109.47211 * 300.00543 * 24 22 8 46 46 H 1.09001 * 109.47067 * 210.00570 * 28 27 3 47 47 H 1.09001 * 109.47479 * 330.00086 * 28 27 3 48 48 H 1.09001 * 109.47387 * 300.00000 * 29 28 27 49 49 H 1.09004 * 109.47254 * 60.00110 * 29 28 27 50 50 H 1.09000 * 109.46918 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.3033 2.1883 -1.0969 5 6 2.1545 1.7666 -2.5028 6 8 1.7597 0.6462 -2.7628 7 7 2.4572 2.6226 -3.4988 8 6 2.3100 2.2035 -4.8948 9 1 2.5628 1.1470 -4.9852 10 6 0.8629 2.4215 -5.3427 11 6 0.7045 1.9502 -6.7916 12 7 1.7033 2.6349 -7.6236 13 6 1.3235 3.3253 -8.7434 14 1 1.9184 4.1560 -9.0934 15 6 0.1739 2.9575 -9.4290 16 7 -0.4187 3.8180 -10.2296 17 14 -0.5322 1.2414 -9.2154 18 1 -1.5535 1.2569 -8.1376 19 1 -1.1612 0.8031 -10.4872 20 1 0.5570 0.2997 -8.8516 21 6 3.1174 2.5651 -7.2308 22 6 3.2488 3.0296 -5.7769 23 1 2.9807 4.0837 -5.7061 24 6 4.6920 2.8372 -5.3071 25 7 2.7339 3.3910 -0.6789 26 7 2.7396 3.4224 0.6082 27 7 2.3002 2.1782 1.0825 28 6 2.1598 1.7781 2.4848 29 6 3.4713 1.1590 2.9722 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3634 0.5139 0.8899 33 1 1.8934 -0.5139 -0.8899 34 1 1.8933 -0.5139 0.8900 35 1 2.7732 3.5158 -3.2913 36 1 0.1930 1.8512 -4.6992 37 1 0.6172 3.4814 -5.2760 38 1 -0.2965 2.1937 -7.1477 39 1 0.8613 0.8728 -6.8447 40 1 -1.2218 3.5608 -10.7090 41 1 3.7085 3.2144 -7.8767 42 1 3.4710 1.5379 -7.3196 43 1 4.9601 1.7831 -5.3791 44 1 5.3604 3.4254 -5.9359 45 1 4.7839 3.1655 -4.2717 46 1 1.9239 2.6531 3.0905 47 1 1.3569 1.0465 2.5753 48 1 3.7073 0.2840 2.3666 49 1 4.2742 1.8907 2.8818 50 1 3.3670 0.8617 4.0157 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000942725609.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:03:06 Heat of formation + Delta-G solvation = 44.847611 kcal Electronic energy + Delta-G solvation = -30050.152506 eV Core-core repulsion = 26113.769356 eV Total energy + Delta-G solvation = -3936.383150 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -43.37932 -40.97057 -39.25634 -36.84297 -36.26052 -34.79648 -34.21534 -33.36487 -32.14645 -31.38031 -30.68834 -27.82195 -27.02581 -25.73667 -24.95369 -24.27368 -23.39904 -23.04815 -21.49945 -21.46121 -20.92713 -19.01964 -18.65942 -17.65647 -17.24844 -17.04567 -16.83412 -16.09177 -15.90669 -15.74543 -15.65512 -15.20336 -15.12033 -14.91290 -14.81609 -14.67735 -14.30275 -13.94957 -13.84737 -13.76772 -13.57288 -13.38088 -13.29034 -13.15178 -12.83506 -12.71789 -12.67234 -12.33155 -12.25648 -12.21074 -12.10403 -11.93747 -11.83098 -11.72090 -11.48044 -11.34167 -11.21250 -11.06000 -10.72245 -10.31916 -9.95133 -8.95584 -8.16226 -5.47891 0.08637 0.59086 1.06049 1.30570 1.40889 1.50186 2.10200 2.22361 2.41956 3.04052 3.11556 3.31892 3.38558 3.51022 3.65564 3.73052 3.91897 3.94491 4.09961 4.13267 4.23788 4.25923 4.27126 4.39056 4.41784 4.50664 4.57204 4.59624 4.65115 4.73863 4.76246 4.81227 4.90213 4.91021 4.91960 4.93544 5.05316 5.11026 5.15145 5.17349 5.19802 5.28611 5.31230 5.45478 5.51111 5.54177 5.86796 6.13464 6.44511 6.88555 6.90650 7.15068 7.61717 8.02862 9.03423 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.020195 B = 0.002813 C = 0.002620 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1386.159444 B = 9953.151486 C =10684.138465 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.062 4.062 3 C 0.136 3.864 4 C -0.127 4.127 5 C 0.603 3.397 6 O -0.557 6.557 7 N -0.700 5.700 8 C 0.169 3.831 9 H 0.079 0.921 10 C -0.132 4.132 11 C 0.127 3.873 12 N -0.619 5.619 13 C -0.245 4.245 14 H 0.058 0.942 15 C -0.034 4.034 16 N -0.955 5.955 17 Si 0.941 3.059 18 H -0.279 1.279 19 H -0.310 1.310 20 H -0.261 1.261 21 C 0.153 3.847 22 C -0.105 4.105 23 H 0.070 0.930 24 C -0.134 4.134 25 N -0.224 5.224 26 N -0.089 5.089 27 N -0.347 5.347 28 C 0.102 3.898 29 C -0.167 4.167 30 H 0.035 0.965 31 H 0.087 0.913 32 H 0.067 0.933 33 H 0.099 0.901 34 H 0.115 0.885 35 H 0.411 0.589 36 H 0.063 0.937 37 H 0.058 0.942 38 H 0.051 0.949 39 H 0.033 0.967 40 H 0.261 0.739 41 H 0.066 0.934 42 H 0.037 0.963 43 H 0.057 0.943 44 H 0.068 0.932 45 H 0.062 0.938 46 H 0.119 0.881 47 H 0.132 0.868 48 H 0.063 0.937 49 H 0.051 0.949 50 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.437 -9.127 31.699 33.815 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.101 4.101 3 C -0.004 4.004 4 C -0.267 4.267 5 C 0.388 3.612 6 O -0.435 6.435 7 N -0.349 5.349 8 C 0.065 3.935 9 H 0.097 0.903 10 C -0.172 4.172 11 C 0.001 3.999 12 N -0.344 5.344 13 C -0.374 4.374 14 H 0.075 0.925 15 C -0.229 4.229 16 N -0.602 5.602 17 Si 0.770 3.230 18 H -0.206 1.206 19 H -0.238 1.238 20 H -0.185 1.185 21 C 0.028 3.972 22 C -0.125 4.125 23 H 0.089 0.911 24 C -0.192 4.192 25 N -0.097 5.097 26 N -0.068 5.068 27 N -0.132 5.132 28 C -0.017 4.017 29 C -0.225 4.225 30 H 0.055 0.945 31 H 0.106 0.894 32 H 0.086 0.914 33 H 0.117 0.883 34 H 0.134 0.866 35 H 0.247 0.753 36 H 0.082 0.918 37 H 0.077 0.923 38 H 0.069 0.931 39 H 0.050 0.950 40 H 0.070 0.930 41 H 0.084 0.916 42 H 0.055 0.945 43 H 0.076 0.924 44 H 0.087 0.913 45 H 0.081 0.919 46 H 0.137 0.863 47 H 0.150 0.850 48 H 0.082 0.918 49 H 0.070 0.930 50 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 7.576 -8.468 31.853 33.818 hybrid contribution -0.913 -0.666 -0.772 1.368 sum 6.663 -9.134 31.080 33.073 Atomic orbital electron populations 1.21658 0.92571 1.03816 1.01694 1.20582 0.97556 0.85696 1.06303 1.22286 0.95234 0.96922 0.85926 1.21246 1.16953 0.93101 0.95440 1.16927 0.76843 0.84368 0.83054 1.90750 1.48142 1.20620 1.83985 1.45850 1.66402 1.17320 1.05328 1.20774 0.94252 0.99348 0.79135 0.90254 1.22257 0.97348 1.01364 0.96222 1.21297 0.92994 0.95008 0.90607 1.44522 1.02709 1.61121 1.25999 1.18880 1.08400 1.07920 1.02248 0.92471 1.25860 0.98718 1.00772 0.97501 1.69960 1.20704 1.35481 1.34018 0.85991 0.78513 0.83112 0.75343 1.20605 1.23839 1.18528 1.21130 0.83802 0.99007 0.93268 1.21783 0.95856 0.99702 0.95200 0.91119 1.21697 0.93874 1.02241 1.01345 1.74571 1.11621 1.18597 1.04888 1.81868 1.21040 1.00896 1.03027 1.50803 1.43767 1.09825 1.08843 1.22553 1.01781 1.03598 0.73755 1.22192 0.95211 1.01022 1.04059 0.94533 0.89387 0.91422 0.88268 0.86637 0.75301 0.91794 0.92333 0.93111 0.94961 0.92988 0.91566 0.94477 0.92416 0.91303 0.91921 0.86313 0.85037 0.91807 0.92961 0.86877 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.85 9.89 71.98 0.71 -1.14 16 2 C -0.06 -0.86 5.43 29.85 0.16 -0.70 16 3 C 0.14 2.64 6.27 41.72 0.26 2.90 16 4 C -0.13 -3.31 6.99 40.81 0.29 -3.02 16 5 C 0.60 17.68 7.78 86.69 0.67 18.35 16 6 O -0.56 -18.20 14.38 -4.04 -0.06 -18.25 16 7 N -0.70 -19.90 4.36 -445.58 -1.94 -21.85 16 8 C 0.17 5.44 1.88 45.02 0.08 5.53 16 9 H 0.08 2.71 7.58 -2.39 -0.02 2.69 16 10 C -0.13 -4.94 5.65 30.67 0.17 -4.76 16 11 C 0.13 5.65 4.20 86.36 0.36 6.01 16 12 N -0.62 -29.58 2.77 -699.10 -1.94 -31.51 16 13 C -0.24 -14.03 10.03 84.03 0.84 -13.19 16 14 H 0.06 3.54 8.06 -2.91 -0.02 3.51 16 15 C -0.03 -2.01 5.23 84.86 0.44 -1.56 16 16 N -0.96 -60.93 13.97 21.65 0.30 -60.63 16 17 Si 0.94 47.91 24.35 68.60 1.67 49.58 16 18 H -0.28 -13.64 6.62 99.48 0.66 -12.98 16 19 H -0.31 -15.91 7.11 99.48 0.71 -15.21 16 20 H -0.26 -12.75 6.64 99.48 0.66 -12.09 16 21 C 0.15 5.84 5.80 86.36 0.50 6.34 16 22 C -0.10 -3.25 2.46 -10.72 -0.03 -3.28 16 23 H 0.07 2.31 8.14 -2.39 -0.02 2.29 16 24 C -0.13 -3.23 9.03 71.98 0.65 -2.58 16 25 N -0.22 -6.08 12.04 -49.99 -0.60 -6.68 16 26 N -0.09 -2.14 13.78 37.02 0.51 -1.63 16 27 N -0.35 -5.74 3.63 -333.78 -1.21 -6.95 16 28 C 0.10 0.61 6.87 86.38 0.59 1.20 16 29 C -0.17 -0.70 10.24 71.98 0.74 0.03 16 30 H 0.04 0.72 8.14 -2.39 -0.02 0.71 16 31 H 0.09 0.88 8.14 -2.39 -0.02 0.87 16 32 H 0.07 0.64 8.14 -2.39 -0.02 0.62 16 33 H 0.10 1.85 6.43 -2.39 -0.02 1.84 16 34 H 0.12 0.72 7.82 -2.39 -0.02 0.70 16 35 H 0.41 10.78 7.99 -92.71 -0.74 10.04 16 36 H 0.06 2.33 8.14 -2.39 -0.02 2.31 16 37 H 0.06 2.27 8.14 -2.39 -0.02 2.25 16 38 H 0.05 2.50 4.49 -2.39 -0.01 2.49 16 39 H 0.03 1.42 7.08 -2.39 -0.02 1.40 16 40 H 0.26 15.86 8.31 -92.71 -0.77 15.09 16 41 H 0.07 2.53 7.93 -2.39 -0.02 2.51 16 42 H 0.04 1.35 8.14 -2.39 -0.02 1.33 16 43 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 44 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 45 H 0.06 1.39 7.36 -2.39 -0.02 1.38 16 46 H 0.12 0.48 8.14 -2.39 -0.02 0.46 16 47 H 0.13 0.05 7.76 -2.39 -0.02 0.03 16 48 H 0.06 0.32 8.14 -2.39 -0.02 0.30 16 49 H 0.05 0.43 8.14 -2.39 -0.02 0.41 16 50 H 0.11 -0.12 8.14 -2.39 -0.02 -0.14 16 Total: -1.00 -75.44 394.04 3.29 -72.15 By element: Atomic # 1 Polarization: 15.55 SS G_CDS: 0.10 Total: 15.65 kcal Atomic # 6 Polarization: 3.67 SS G_CDS: 6.46 Total: 10.13 kcal Atomic # 7 Polarization: -124.36 SS G_CDS: -4.88 Total: -129.25 kcal Atomic # 8 Polarization: -18.20 SS G_CDS: -0.06 Total: -18.25 kcal Atomic # 14 Polarization: 47.91 SS G_CDS: 1.67 Total: 49.58 kcal Total: -75.44 3.29 -72.15 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000942725609.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.994 kcal (2) G-P(sol) polarization free energy of solvation -75.439 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.555 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.293 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.146 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.848 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds