Wall clock time and date at job start Tue Mar 31 2020 18:33:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.36601 * 126.57685 * 2 1 4 4 C 1.47519 * 125.77452 * 0.03904 * 3 2 1 5 5 O 1.21600 * 120.00045 * 359.71914 * 4 3 2 6 6 N 1.34775 * 120.00195 * 179.71298 * 4 3 2 7 7 C 1.46498 * 120.00071 * 180.02562 * 6 4 3 8 8 H 1.08998 * 109.46016 * 325.03142 * 7 6 4 9 9 C 1.53036 * 109.46333 * 85.00260 * 7 6 4 10 10 C 1.53187 * 109.31796 * 181.38587 * 9 7 6 11 11 N 1.46929 * 108.77314 * 305.36619 * 10 9 7 12 12 C 1.36938 * 120.63096 * 233.58114 * 11 10 9 13 13 H 1.07992 * 120.00204 * 152.46189 * 12 11 10 14 14 C 1.38815 * 119.99900 * 332.46589 * 12 11 10 15 15 N 1.31618 * 120.00254 * 342.37015 * 14 12 11 16 16 Si 1.86802 * 119.99754 * 162.64116 * 14 12 11 17 17 H 1.48504 * 109.46795 * 90.00550 * 16 14 12 18 18 H 1.48501 * 109.47139 * 209.99814 * 16 14 12 19 19 H 1.48493 * 109.47572 * 330.00208 * 16 14 12 20 20 C 1.46920 * 118.73799 * 53.86216 * 11 10 9 21 21 C 1.53041 * 109.46342 * 205.07177 * 7 6 4 22 22 H 1.09004 * 109.49307 * 298.60370 * 21 7 6 23 23 C 1.53004 * 109.49597 * 58.66018 * 21 7 6 24 24 N 1.34405 * 108.45440 * 179.77830 * 3 2 1 25 25 N 1.28761 * 109.52308 * 0.22687 * 24 3 2 26 26 N 1.34808 * 126.58228 * 180.17294 * 2 1 3 27 27 C 1.46499 * 126.59419 * 359.97438 * 26 2 1 28 28 C 1.53002 * 109.46843 * 120.29584 * 27 26 2 29 29 C 1.52996 * 109.47534 * 240.29736 * 27 26 2 30 30 H 1.08991 * 109.47259 * 90.02270 * 1 2 3 31 31 H 1.09003 * 109.47110 * 210.02803 * 1 2 3 32 32 H 1.09000 * 109.46931 * 330.02200 * 1 2 3 33 33 H 0.97001 * 120.00169 * 0.02562 * 6 4 3 34 34 H 1.09004 * 109.49681 * 61.42944 * 9 7 6 35 35 H 1.09007 * 109.52459 * 301.35841 * 9 7 6 36 36 H 1.08998 * 109.58921 * 185.57581 * 10 9 7 37 37 H 1.08999 * 109.70471 * 65.22142 * 10 9 7 38 38 H 0.96994 * 120.00406 * 180.02562 * 15 14 12 39 39 H 1.09000 * 109.59297 * 65.92481 * 20 11 10 40 40 H 1.09004 * 109.58520 * 186.35376 * 20 11 10 41 41 H 1.09002 * 109.47122 * 60.00181 * 23 21 7 42 42 H 1.08999 * 109.47382 * 180.02562 * 23 21 7 43 43 H 1.09003 * 109.47321 * 300.00071 * 23 21 7 44 44 H 1.09000 * 109.47281 * 0.30386 * 27 26 2 45 45 H 1.09009 * 109.47037 * 60.00574 * 28 27 26 46 46 H 1.08999 * 109.47047 * 179.97438 * 28 27 26 47 47 H 1.09000 * 109.47525 * 300.00424 * 28 27 26 48 48 H 1.08993 * 109.47564 * 300.00238 * 29 27 26 49 49 H 1.09004 * 109.46792 * 60.00547 * 29 27 26 50 50 H 1.08996 * 109.47080 * 179.97438 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3210 1.0970 0.0000 4 6 1.8738 2.5027 0.0008 5 8 0.6859 2.7629 -0.0036 6 7 2.7817 3.4988 0.0066 7 6 2.3375 4.8948 0.0079 8 1 1.4272 4.9868 -0.5844 9 6 2.0575 5.3394 1.4453 10 6 1.5603 6.7883 1.4398 11 7 2.5405 7.6219 0.7304 12 6 3.0628 8.7410 1.3220 13 1 4.0458 9.0904 1.0431 14 6 2.3287 9.4263 2.2804 15 7 1.0307 9.2318 2.3785 16 14 3.1819 10.6303 3.4258 17 1 3.1778 11.9833 2.8137 18 1 2.4628 10.6724 4.7244 19 1 4.5830 10.1925 3.6497 20 6 2.9448 7.2354 -0.6281 21 6 3.4307 5.7784 -0.5973 22 1 4.3340 5.7056 0.0084 23 6 3.7330 5.3123 -2.0229 24 7 3.5984 0.6789 0.0049 25 7 3.6299 -0.6083 0.0032 26 7 2.3104 -1.0825 -0.0033 27 6 1.8864 -2.4848 -0.0070 28 6 2.4350 -3.1801 -1.2546 29 6 2.4234 -3.1834 1.2438 30 1 -0.3633 -0.0004 -1.0276 31 1 -0.3633 -0.8898 0.5143 32 1 -0.3633 0.8902 0.5135 33 1 3.7292 3.2914 0.0098 34 1 2.9735 5.2713 2.0321 35 1 1.2957 4.6950 1.8841 36 1 1.4539 7.1421 2.4653 37 1 0.5974 6.8446 0.9322 38 1 0.5176 9.7109 3.0478 39 1 2.0932 7.3253 -1.3025 40 1 3.7524 7.8842 -0.9675 41 1 2.8297 5.3861 -2.6285 42 1 4.5120 5.9415 -2.4535 43 1 4.0730 4.2768 -2.0023 44 1 0.7976 -2.5352 -0.0122 45 1 3.5239 -3.1298 -1.2495 46 1 2.1199 -4.2236 -1.2572 47 1 2.0525 -2.6825 -2.1458 48 1 3.5121 -3.1331 1.2490 49 1 2.0325 -2.6880 2.1326 50 1 2.1075 -4.2265 1.2412 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000943777850.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:33:59 Heat of formation + Delta-G solvation = 64.540166 kcal Electronic energy + Delta-G solvation = -29700.041632 eV Core-core repulsion = 25764.512416 eV Total energy + Delta-G solvation = -3935.529217 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -42.42497 -39.51607 -37.52759 -36.72884 -34.52033 -33.23429 -32.56161 -31.29470 -31.01017 -29.73582 -27.96260 -27.91120 -25.81040 -25.11097 -24.21902 -23.19220 -21.74519 -20.89305 -20.60347 -19.94638 -19.22267 -17.71965 -16.81945 -16.40746 -16.34571 -15.75960 -15.01803 -14.75844 -14.51998 -14.40323 -14.07641 -13.81734 -13.72296 -13.43815 -13.43397 -13.28696 -13.16519 -12.83754 -12.75263 -12.69337 -12.56278 -12.14104 -12.10126 -12.00493 -11.74278 -11.40248 -11.24599 -11.21123 -11.01517 -10.75605 -10.57900 -10.39451 -10.27157 -10.19657 -9.97239 -9.83743 -9.72370 -9.42753 -9.23941 -8.59452 -8.35665 -6.63655 -5.74204 -3.16147 0.98937 1.70871 1.77019 3.37400 3.41550 3.44666 3.47969 3.50554 3.87212 4.02356 4.22396 4.33987 4.41991 4.53563 4.67237 4.80559 4.94195 5.01655 5.11660 5.14958 5.21385 5.24984 5.38705 5.41180 5.46607 5.53678 5.55033 5.60198 5.67950 5.69155 5.85394 5.99408 6.07679 6.19637 6.26204 6.32635 6.36617 6.47044 6.53850 6.68588 6.74195 6.84741 7.00777 7.03294 7.43294 7.68360 7.73910 7.84298 7.95055 8.43556 8.49526 9.25532 9.89252 10.45825 11.34265 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.023162 B = 0.002400 C = 0.002340 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1208.584503 B =11663.271872 C =11962.245421 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.096 4.096 2 C 0.120 3.880 3 C -0.102 4.102 4 C 0.601 3.399 5 O -0.539 6.539 6 N -0.705 5.705 7 C 0.158 3.842 8 H 0.084 0.916 9 C -0.147 4.147 10 C 0.174 3.826 11 N -0.593 5.593 12 C -0.252 4.252 13 H 0.066 0.934 14 C 0.002 3.998 15 N -0.901 5.901 16 Si 0.901 3.099 17 H -0.287 1.287 18 H -0.290 1.290 19 H -0.280 1.280 20 C 0.155 3.845 21 C -0.115 4.115 22 H 0.072 0.928 23 C -0.143 4.143 24 N -0.205 5.205 25 N -0.068 5.068 26 N -0.359 5.359 27 C 0.144 3.856 28 C -0.162 4.162 29 C -0.163 4.163 30 H 0.090 0.910 31 H 0.072 0.928 32 H 0.115 0.885 33 H 0.402 0.598 34 H 0.055 0.945 35 H 0.054 0.946 36 H 0.089 0.911 37 H 0.021 0.979 38 H 0.254 0.746 39 H 0.021 0.979 40 H 0.058 0.942 41 H 0.051 0.949 42 H 0.053 0.947 43 H 0.048 0.952 44 H 0.109 0.891 45 H 0.074 0.926 46 H 0.082 0.918 47 H 0.064 0.936 48 H 0.074 0.926 49 H 0.064 0.936 50 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.264 -26.482 -6.478 27.264 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.017 4.017 3 C -0.241 4.241 4 C 0.384 3.616 5 O -0.416 6.416 6 N -0.354 5.354 7 C 0.055 3.945 8 H 0.102 0.898 9 C -0.188 4.188 10 C 0.047 3.953 11 N -0.315 5.315 12 C -0.382 4.382 13 H 0.083 0.917 14 C -0.197 4.197 15 N -0.546 5.546 16 Si 0.730 3.270 17 H -0.214 1.214 18 H -0.216 1.216 19 H -0.205 1.205 20 C 0.028 3.972 21 C -0.136 4.136 22 H 0.090 0.910 23 C -0.201 4.201 24 N -0.078 5.078 25 N -0.048 5.048 26 N -0.146 5.146 27 C 0.042 3.958 28 C -0.220 4.220 29 C -0.221 4.221 30 H 0.109 0.891 31 H 0.091 0.909 32 H 0.133 0.867 33 H 0.237 0.763 34 H 0.074 0.926 35 H 0.072 0.928 36 H 0.107 0.893 37 H 0.039 0.961 38 H 0.064 0.936 39 H 0.039 0.961 40 H 0.076 0.924 41 H 0.070 0.930 42 H 0.072 0.928 43 H 0.067 0.933 44 H 0.127 0.873 45 H 0.093 0.907 46 H 0.101 0.899 47 H 0.083 0.917 48 H 0.093 0.907 49 H 0.083 0.917 50 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 0.785 -26.597 -6.358 27.358 hybrid contribution -0.117 0.527 0.668 0.859 sum 0.668 -26.071 -5.689 26.693 Atomic orbital electron populations 1.20727 0.84796 1.05375 1.04585 1.21935 0.96241 0.86372 0.97170 1.21377 0.88924 0.95707 1.18124 1.16722 0.85813 0.82348 0.76672 1.90766 1.15875 1.83494 1.51431 1.46089 1.09727 1.06452 1.73112 1.21105 0.97873 0.77494 0.98026 0.89839 1.22581 1.00936 1.00476 0.94758 1.20759 0.90159 0.84856 0.99492 1.44122 1.49836 1.26767 1.10782 1.19160 0.97698 1.02607 1.18698 0.91672 1.25034 0.94876 0.98099 1.01675 1.70038 1.04534 1.44424 1.35578 0.86327 0.78983 0.81050 0.80595 1.21436 1.21603 1.20516 1.20980 0.97266 0.90814 0.88122 1.22051 0.98112 0.97973 0.95436 0.90960 1.21778 1.01233 1.00300 0.96744 1.74612 1.19169 1.04138 1.09863 1.81895 0.96331 1.03324 1.23202 1.50609 1.06343 1.07153 1.50517 1.21628 1.00474 0.75381 0.98273 1.22153 1.03192 1.00833 0.95819 1.22163 1.03278 1.00836 0.95839 0.89119 0.90935 0.86704 0.76307 0.92594 0.92757 0.89258 0.96115 0.93637 0.96122 0.92374 0.92958 0.92765 0.93321 0.87308 0.90694 0.89940 0.91710 0.90674 0.91677 0.89939 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.82 9.40 36.01 0.34 -0.48 16 2 C 0.12 1.37 7.02 -81.88 -0.57 0.79 16 3 C -0.10 -1.45 6.99 -83.55 -0.58 -2.03 16 4 C 0.60 9.70 7.78 -12.48 -0.10 9.60 16 5 O -0.54 -9.76 14.38 5.28 0.08 -9.68 16 6 N -0.70 -11.15 4.36 -54.81 -0.24 -11.39 16 7 C 0.16 2.85 1.88 -67.89 -0.13 2.72 16 8 H 0.08 1.65 7.57 -51.93 -0.39 1.25 16 9 C -0.15 -3.01 5.65 -26.62 -0.15 -3.16 16 10 C 0.17 4.27 5.31 -3.71 -0.02 4.25 16 11 N -0.59 -14.96 2.99 -172.06 -0.51 -15.47 16 12 C -0.25 -6.95 9.59 -15.06 -0.14 -7.09 16 13 H 0.07 1.76 7.89 -52.49 -0.41 1.34 16 14 C 0.00 0.05 4.90 -17.43 -0.09 -0.04 16 15 N -0.90 -26.48 11.19 55.49 0.62 -25.86 16 16 Si 0.90 21.89 29.59 -169.99 -5.03 16.86 16 17 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 18 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 19 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 20 C 0.16 3.25 5.83 -3.49 -0.02 3.23 16 21 C -0.11 -1.99 2.47 -90.27 -0.22 -2.21 16 22 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 23 C -0.14 -2.05 9.03 37.16 0.34 -1.71 16 24 N -0.20 -2.96 12.04 32.85 0.40 -2.57 16 25 N -0.07 -0.88 13.67 60.35 0.82 -0.06 16 26 N -0.36 -3.60 3.28 -50.41 -0.17 -3.76 16 27 C 0.14 0.83 3.68 -67.93 -0.25 0.58 16 28 C -0.16 -0.78 9.47 37.16 0.35 -0.43 16 29 C -0.16 -0.82 9.47 37.16 0.35 -0.46 16 30 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 31 H 0.07 0.39 7.20 -51.93 -0.37 0.02 16 32 H 0.11 1.23 6.43 -51.93 -0.33 0.90 16 33 H 0.40 5.85 8.00 -40.82 -0.33 5.53 16 34 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 35 H 0.05 1.10 8.14 -51.92 -0.42 0.68 16 36 H 0.09 2.45 6.03 -51.93 -0.31 2.13 16 37 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 38 H 0.25 7.20 8.31 -40.82 -0.34 6.86 16 39 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 40 H 0.06 1.18 7.93 -51.93 -0.41 0.77 16 41 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 42 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 43 H 0.05 0.65 7.36 -51.93 -0.38 0.26 16 44 H 0.11 0.39 6.79 -51.93 -0.35 0.03 16 45 H 0.07 0.46 8.14 -51.92 -0.42 0.04 16 46 H 0.08 0.20 8.14 -51.93 -0.42 -0.22 16 47 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 48 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 49 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 50 H 0.08 0.21 8.14 -51.93 -0.42 -0.21 16 LS Contribution 398.79 15.07 6.01 6.01 Total: -1.00 -32.70 398.79 -7.28 -39.98 By element: Atomic # 1 Polarization: 10.74 SS G_CDS: -8.36 Total: 2.39 kcal Atomic # 6 Polarization: 4.46 SS G_CDS: -0.90 Total: 3.56 kcal Atomic # 7 Polarization: -60.03 SS G_CDS: 0.92 Total: -59.11 kcal Atomic # 8 Polarization: -9.76 SS G_CDS: 0.08 Total: -9.68 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -5.03 Total: 16.86 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -32.70 -7.28 -39.98 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000943777850.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.519 kcal (2) G-P(sol) polarization free energy of solvation -32.702 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.817 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.276 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.979 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.540 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds