Wall clock time and date at job start Tue Mar 31 2020 18:33:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.36601 * 126.57685 * 2 1 4 4 C 1.47519 * 125.77452 * 0.03904 * 3 2 1 5 5 O 1.21600 * 120.00045 * 359.71914 * 4 3 2 6 6 N 1.34775 * 120.00195 * 179.71298 * 4 3 2 7 7 C 1.46498 * 120.00071 * 180.02562 * 6 4 3 8 8 H 1.08998 * 109.46016 * 325.03142 * 7 6 4 9 9 C 1.53036 * 109.46333 * 85.00260 * 7 6 4 10 10 C 1.53187 * 109.31796 * 181.38587 * 9 7 6 11 11 N 1.46929 * 108.77314 * 305.36619 * 10 9 7 12 12 C 1.36938 * 120.63096 * 233.58114 * 11 10 9 13 13 H 1.07992 * 120.00204 * 152.46189 * 12 11 10 14 14 C 1.38815 * 119.99900 * 332.46589 * 12 11 10 15 15 N 1.31618 * 120.00254 * 342.37015 * 14 12 11 16 16 Si 1.86802 * 119.99754 * 162.64116 * 14 12 11 17 17 H 1.48504 * 109.46795 * 90.00550 * 16 14 12 18 18 H 1.48501 * 109.47139 * 209.99814 * 16 14 12 19 19 H 1.48493 * 109.47572 * 330.00208 * 16 14 12 20 20 C 1.46920 * 118.73799 * 53.86216 * 11 10 9 21 21 C 1.53041 * 109.46342 * 205.07177 * 7 6 4 22 22 H 1.09004 * 109.49307 * 298.60370 * 21 7 6 23 23 C 1.53004 * 109.49597 * 58.66018 * 21 7 6 24 24 N 1.34405 * 108.45440 * 179.77830 * 3 2 1 25 25 N 1.28761 * 109.52308 * 0.22687 * 24 3 2 26 26 N 1.34808 * 126.58228 * 180.17294 * 2 1 3 27 27 C 1.46499 * 126.59419 * 359.97438 * 26 2 1 28 28 C 1.53002 * 109.46843 * 120.29584 * 27 26 2 29 29 C 1.52996 * 109.47534 * 240.29736 * 27 26 2 30 30 H 1.08991 * 109.47259 * 90.02270 * 1 2 3 31 31 H 1.09003 * 109.47110 * 210.02803 * 1 2 3 32 32 H 1.09000 * 109.46931 * 330.02200 * 1 2 3 33 33 H 0.97001 * 120.00169 * 0.02562 * 6 4 3 34 34 H 1.09004 * 109.49681 * 61.42944 * 9 7 6 35 35 H 1.09007 * 109.52459 * 301.35841 * 9 7 6 36 36 H 1.08998 * 109.58921 * 185.57581 * 10 9 7 37 37 H 1.08999 * 109.70471 * 65.22142 * 10 9 7 38 38 H 0.96994 * 120.00406 * 180.02562 * 15 14 12 39 39 H 1.09000 * 109.59297 * 65.92481 * 20 11 10 40 40 H 1.09004 * 109.58520 * 186.35376 * 20 11 10 41 41 H 1.09002 * 109.47122 * 60.00181 * 23 21 7 42 42 H 1.08999 * 109.47382 * 180.02562 * 23 21 7 43 43 H 1.09003 * 109.47321 * 300.00071 * 23 21 7 44 44 H 1.09000 * 109.47281 * 0.30386 * 27 26 2 45 45 H 1.09009 * 109.47037 * 60.00574 * 28 27 26 46 46 H 1.08999 * 109.47047 * 179.97438 * 28 27 26 47 47 H 1.09000 * 109.47525 * 300.00424 * 28 27 26 48 48 H 1.08993 * 109.47564 * 300.00238 * 29 27 26 49 49 H 1.09004 * 109.46792 * 60.00547 * 29 27 26 50 50 H 1.08996 * 109.47080 * 179.97438 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3210 1.0970 0.0000 4 6 1.8738 2.5027 0.0008 5 8 0.6859 2.7629 -0.0036 6 7 2.7817 3.4988 0.0066 7 6 2.3375 4.8948 0.0079 8 1 1.4272 4.9868 -0.5844 9 6 2.0575 5.3394 1.4453 10 6 1.5603 6.7883 1.4398 11 7 2.5405 7.6219 0.7304 12 6 3.0628 8.7410 1.3220 13 1 4.0458 9.0904 1.0431 14 6 2.3287 9.4263 2.2804 15 7 1.0307 9.2318 2.3785 16 14 3.1819 10.6303 3.4258 17 1 3.1778 11.9833 2.8137 18 1 2.4628 10.6724 4.7244 19 1 4.5830 10.1925 3.6497 20 6 2.9448 7.2354 -0.6281 21 6 3.4307 5.7784 -0.5973 22 1 4.3340 5.7056 0.0084 23 6 3.7330 5.3123 -2.0229 24 7 3.5984 0.6789 0.0049 25 7 3.6299 -0.6083 0.0032 26 7 2.3104 -1.0825 -0.0033 27 6 1.8864 -2.4848 -0.0070 28 6 2.4350 -3.1801 -1.2546 29 6 2.4234 -3.1834 1.2438 30 1 -0.3633 -0.0004 -1.0276 31 1 -0.3633 -0.8898 0.5143 32 1 -0.3633 0.8902 0.5135 33 1 3.7292 3.2914 0.0098 34 1 2.9735 5.2713 2.0321 35 1 1.2957 4.6950 1.8841 36 1 1.4539 7.1421 2.4653 37 1 0.5974 6.8446 0.9322 38 1 0.5176 9.7109 3.0478 39 1 2.0932 7.3253 -1.3025 40 1 3.7524 7.8842 -0.9675 41 1 2.8297 5.3861 -2.6285 42 1 4.5120 5.9415 -2.4535 43 1 4.0730 4.2768 -2.0023 44 1 0.7976 -2.5352 -0.0122 45 1 3.5239 -3.1298 -1.2495 46 1 2.1199 -4.2236 -1.2572 47 1 2.0525 -2.6825 -2.1458 48 1 3.5121 -3.1331 1.2490 49 1 2.0325 -2.6880 2.1326 50 1 2.1075 -4.2265 1.2412 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000943777850.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:33:57 Heat of formation + Delta-G solvation = 43.181692 kcal Electronic energy + Delta-G solvation = -29700.967805 eV Core-core repulsion = 25764.512416 eV Total energy + Delta-G solvation = -3936.455390 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -43.34583 -40.89850 -39.09086 -37.36775 -36.20739 -34.27486 -33.92207 -32.91649 -32.24115 -31.29779 -28.87610 -28.27727 -27.40428 -26.85865 -25.03335 -24.54343 -23.17013 -22.61099 -21.56576 -21.10431 -20.64475 -18.86229 -18.49685 -17.52264 -17.25457 -17.07626 -16.74053 -15.80733 -15.75678 -15.58580 -15.37943 -15.24864 -15.02386 -14.67563 -14.54965 -14.27286 -14.18652 -13.99256 -13.98148 -13.58214 -13.24741 -13.19506 -13.05456 -12.98635 -12.96881 -12.73343 -12.58692 -12.53298 -12.42352 -12.28736 -12.06674 -12.03819 -11.94022 -11.66448 -11.55779 -11.30627 -11.14815 -10.99474 -10.55126 -10.27455 -9.90744 -8.69982 -7.86413 -5.31684 0.11413 0.61771 1.04248 1.47390 1.49215 1.59022 2.13463 2.24540 2.52378 3.15177 3.28339 3.31705 3.54285 3.64845 3.72639 3.79144 3.81099 3.97897 4.05031 4.11432 4.16987 4.39655 4.52197 4.59593 4.60811 4.63339 4.64109 4.70583 4.73604 4.74423 4.75296 4.85587 4.86683 4.92339 5.02230 5.08610 5.13442 5.17473 5.18173 5.22847 5.30138 5.39835 5.52174 5.52596 5.58736 5.65047 5.71680 6.39369 6.47403 6.91683 7.14410 7.17997 7.85324 8.38074 9.20519 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.023162 B = 0.002400 C = 0.002340 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1208.584503 B =11663.271872 C =11962.245421 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 C 0.130 3.870 3 C -0.130 4.130 4 C 0.602 3.398 5 O -0.563 6.563 6 N -0.698 5.698 7 C 0.171 3.829 8 H 0.067 0.933 9 C -0.132 4.132 10 C 0.184 3.816 11 N -0.610 5.610 12 C -0.261 4.261 13 H 0.071 0.929 14 C -0.053 4.053 15 N -0.936 5.936 16 Si 0.967 3.033 17 H -0.283 1.283 18 H -0.294 1.294 19 H -0.270 1.270 20 C 0.151 3.849 21 C -0.101 4.101 22 H 0.074 0.926 23 C -0.134 4.134 24 N -0.224 5.224 25 N -0.083 5.083 26 N -0.345 5.345 27 C 0.131 3.869 28 C -0.158 4.158 29 C -0.160 4.160 30 H 0.105 0.895 31 H 0.110 0.890 32 H 0.091 0.909 33 H 0.411 0.589 34 H 0.055 0.945 35 H 0.051 0.949 36 H 0.056 0.944 37 H -0.005 1.005 38 H 0.250 0.750 39 H 0.015 0.985 40 H 0.065 0.935 41 H 0.051 0.949 42 H 0.070 0.930 43 H 0.062 0.938 44 H 0.141 0.859 45 H 0.057 0.943 46 H 0.113 0.887 47 H 0.058 0.942 48 H 0.057 0.943 49 H 0.056 0.944 50 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.922 -29.124 -7.212 30.018 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.009 4.009 3 C -0.270 4.270 4 C 0.387 3.613 5 O -0.441 6.441 6 N -0.348 5.348 7 C 0.067 3.933 8 H 0.085 0.915 9 C -0.172 4.172 10 C 0.057 3.943 11 N -0.333 5.333 12 C -0.391 4.391 13 H 0.089 0.911 14 C -0.248 4.248 15 N -0.582 5.582 16 Si 0.795 3.205 17 H -0.210 1.210 18 H -0.221 1.221 19 H -0.195 1.195 20 C 0.026 3.974 21 C -0.122 4.122 22 H 0.092 0.908 23 C -0.191 4.191 24 N -0.097 5.097 25 N -0.063 5.063 26 N -0.132 5.132 27 C 0.032 3.968 28 C -0.216 4.216 29 C -0.218 4.218 30 H 0.124 0.876 31 H 0.128 0.872 32 H 0.110 0.890 33 H 0.247 0.753 34 H 0.074 0.926 35 H 0.070 0.930 36 H 0.075 0.925 37 H 0.013 0.987 38 H 0.059 0.941 39 H 0.033 0.967 40 H 0.083 0.917 41 H 0.070 0.930 42 H 0.089 0.911 43 H 0.081 0.919 44 H 0.159 0.841 45 H 0.076 0.924 46 H 0.131 0.869 47 H 0.077 0.923 48 H 0.076 0.924 49 H 0.075 0.925 50 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 1.491 -29.292 -7.120 30.182 hybrid contribution -0.376 1.219 0.858 1.538 sum 1.114 -28.073 -6.261 28.785 Atomic orbital electron populations 1.20823 0.82649 1.06076 1.05698 1.22313 0.97383 0.85906 0.95288 1.21206 0.89724 0.95230 1.20801 1.16974 0.85388 0.83184 0.75763 1.90754 1.16830 1.84085 1.52460 1.45865 1.10219 1.05383 1.73318 1.20741 0.97677 0.79044 0.95822 0.91495 1.22339 1.00482 0.97625 0.96771 1.20475 0.89451 0.87171 0.97190 1.44365 1.49777 1.26559 1.12576 1.19527 0.97916 1.02919 1.18758 0.91127 1.25826 0.95425 1.00269 1.03318 1.70199 1.05952 1.45824 1.36237 0.85282 0.78158 0.78879 0.78159 1.21017 1.22066 1.19454 1.21149 0.97208 0.93240 0.85851 1.21851 0.97406 0.95274 0.97665 0.90767 1.21702 1.01795 1.01368 0.94265 1.74576 1.19541 1.04926 1.10664 1.81803 0.98100 1.02794 1.23561 1.50953 1.05128 1.08461 1.48653 1.22209 1.02430 0.73076 0.99107 1.22158 1.02034 1.02476 0.94937 1.22173 1.02113 1.02513 0.94993 0.87627 0.87166 0.89017 0.75305 0.92616 0.93022 0.92522 0.98713 0.94131 0.96676 0.91694 0.93036 0.91107 0.91891 0.84124 0.92400 0.86871 0.92267 0.92405 0.92468 0.86833 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.38 9.40 71.24 0.67 -0.71 16 2 C 0.13 2.75 7.02 41.72 0.29 3.04 16 3 C -0.13 -3.62 6.99 40.82 0.29 -3.33 16 4 C 0.60 19.37 7.78 86.69 0.67 20.05 16 5 O -0.56 -20.57 14.38 -4.03 -0.06 -20.63 16 6 N -0.70 -21.86 4.36 -445.59 -1.94 -23.80 16 7 C 0.17 6.20 1.88 45.02 0.08 6.29 16 8 H 0.07 2.69 7.57 -2.39 -0.02 2.67 16 9 C -0.13 -5.54 5.65 30.67 0.17 -5.37 16 10 C 0.18 9.43 5.31 86.36 0.46 9.89 16 11 N -0.61 -31.45 2.99 -698.28 -2.09 -33.54 16 12 C -0.26 -14.57 9.59 84.03 0.81 -13.77 16 13 H 0.07 3.79 7.89 -2.91 -0.02 3.77 16 14 C -0.05 -3.03 4.90 84.86 0.42 -2.62 16 15 N -0.94 -56.89 11.19 21.65 0.24 -56.65 16 16 Si 0.97 45.68 29.59 68.60 2.03 47.71 16 17 H -0.28 -13.12 7.11 99.48 0.71 -12.41 16 18 H -0.29 -13.98 7.11 99.48 0.71 -13.27 16 19 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 20 C 0.15 6.34 5.83 86.51 0.50 6.84 16 21 C -0.10 -3.43 2.47 -10.57 -0.03 -3.45 16 22 H 0.07 2.53 8.14 -2.38 -0.02 2.51 16 23 C -0.13 -3.57 9.03 71.98 0.65 -2.92 16 24 N -0.22 -6.37 12.04 -49.99 -0.60 -6.97 16 25 N -0.08 -2.08 13.67 37.02 0.51 -1.57 16 26 N -0.34 -6.25 3.28 -313.39 -1.03 -7.28 16 27 C 0.13 1.10 3.68 44.99 0.17 1.27 16 28 C -0.16 -1.07 9.47 71.98 0.68 -0.39 16 29 C -0.16 -1.17 9.47 71.98 0.68 -0.49 16 30 H 0.11 1.27 8.14 -2.39 -0.02 1.25 16 31 H 0.11 0.75 7.20 -2.39 -0.02 0.73 16 32 H 0.09 1.88 6.43 -2.39 -0.02 1.86 16 33 H 0.41 11.61 8.00 -92.71 -0.74 10.87 16 34 H 0.06 2.33 8.14 -2.38 -0.02 2.31 16 35 H 0.05 2.17 8.14 -2.38 -0.02 2.15 16 36 H 0.06 3.26 6.03 -2.39 -0.01 3.25 16 37 H -0.01 -0.29 8.14 -2.39 -0.02 -0.31 16 38 H 0.25 14.68 8.31 -92.71 -0.77 13.91 16 39 H 0.02 0.66 8.14 -2.39 -0.02 0.64 16 40 H 0.06 2.60 7.93 -2.39 -0.02 2.58 16 41 H 0.05 1.39 8.14 -2.39 -0.02 1.38 16 42 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 43 H 0.06 1.53 7.36 -2.39 -0.02 1.51 16 44 H 0.14 0.34 6.79 -2.39 -0.02 0.32 16 45 H 0.06 0.61 8.14 -2.38 -0.02 0.59 16 46 H 0.11 0.09 8.14 -2.39 -0.02 0.07 16 47 H 0.06 0.49 8.14 -2.39 -0.02 0.47 16 48 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 49 H 0.06 0.53 8.14 -2.38 -0.02 0.51 16 50 H 0.11 0.14 8.14 -2.39 -0.02 0.12 16 Total: -1.00 -73.88 398.79 3.77 -70.11 By element: Atomic # 1 Polarization: 18.10 SS G_CDS: 0.20 Total: 18.29 kcal Atomic # 6 Polarization: 7.82 SS G_CDS: 6.52 Total: 14.33 kcal Atomic # 7 Polarization: -124.90 SS G_CDS: -4.91 Total: -129.81 kcal Atomic # 8 Polarization: -20.57 SS G_CDS: -0.06 Total: -20.63 kcal Atomic # 14 Polarization: 45.68 SS G_CDS: 2.03 Total: 47.71 kcal Total: -73.88 3.77 -70.11 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000943777850.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.287 kcal (2) G-P(sol) polarization free energy of solvation -73.877 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.410 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.772 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.105 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.182 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds