Wall clock time and date at job start Tue Mar 31 2020 18:34:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.36590 * 126.57799 * 2 1 4 4 C 1.47519 * 125.77783 * 0.03692 * 3 2 1 5 5 O 1.21598 * 119.99753 * 359.71781 * 4 3 2 6 6 N 1.34773 * 120.00672 * 179.71685 * 4 3 2 7 7 C 1.46498 * 120.00626 * 180.02562 * 6 4 3 8 8 H 1.08997 * 109.45865 * 34.99256 * 7 6 4 9 9 C 1.53037 * 109.45573 * 275.02896 * 7 6 4 10 10 C 1.53192 * 109.31368 * 301.35249 * 9 7 6 11 11 N 1.46926 * 108.77491 * 305.36749 * 10 9 7 12 12 C 1.36936 * 120.63308 * 233.62681 * 11 10 9 13 13 H 1.08003 * 119.99957 * 27.66926 * 12 11 10 14 14 C 1.38813 * 120.00210 * 207.67838 * 12 11 10 15 15 N 1.31616 * 120.00052 * 17.35181 * 14 12 11 16 16 Si 1.86800 * 119.99664 * 197.36398 * 14 12 11 17 17 H 1.48499 * 109.47549 * 359.97438 * 16 14 12 18 18 H 1.48503 * 109.46986 * 119.99726 * 16 14 12 19 19 H 1.48508 * 109.46812 * 239.99182 * 16 14 12 20 20 C 1.46925 * 118.73589 * 53.60981 * 11 10 9 21 21 C 1.53027 * 109.46240 * 154.97198 * 7 6 4 22 22 H 1.09004 * 109.49946 * 178.59256 * 21 7 6 23 23 C 1.53000 * 109.50097 * 298.68724 * 21 7 6 24 24 N 1.34409 * 108.45535 * 179.77074 * 3 2 1 25 25 N 1.28761 * 109.52181 * 0.22853 * 24 3 2 26 26 N 1.34813 * 126.57741 * 180.16588 * 2 1 3 27 27 C 1.46503 * 126.59505 * 359.96681 * 26 2 1 28 28 C 1.53003 * 109.46979 * 120.27583 * 27 26 2 29 29 C 1.53003 * 109.46901 * 240.27539 * 27 26 2 30 30 H 1.08996 * 109.46945 * 90.02263 * 1 2 3 31 31 H 1.08993 * 109.47032 * 210.02744 * 1 2 3 32 32 H 1.09001 * 109.47149 * 330.02522 * 1 2 3 33 33 H 0.97002 * 119.99318 * 359.97438 * 6 4 3 34 34 H 1.08992 * 109.50482 * 61.30655 * 9 7 6 35 35 H 1.08999 * 109.49605 * 181.40344 * 9 7 6 36 36 H 1.09001 * 109.58913 * 65.15643 * 10 9 7 37 37 H 1.08999 * 109.58885 * 185.57986 * 10 9 7 38 38 H 0.96997 * 119.99694 * 179.97438 * 15 14 12 39 39 H 1.09005 * 109.59008 * 66.18199 * 20 11 10 40 40 H 1.09002 * 109.58398 * 186.60324 * 20 11 10 41 41 H 1.09003 * 109.46865 * 60.00385 * 23 21 7 42 42 H 1.09000 * 109.47699 * 179.97438 * 23 21 7 43 43 H 1.09003 * 109.47323 * 300.00434 * 23 21 7 44 44 H 1.08995 * 109.47351 * 0.27490 * 27 26 2 45 45 H 1.09001 * 109.46796 * 60.00012 * 28 27 26 46 46 H 1.09001 * 109.47071 * 179.97438 * 28 27 26 47 47 H 1.08992 * 109.46977 * 299.99902 * 28 27 26 48 48 H 1.08995 * 109.47330 * 299.99629 * 29 27 26 49 49 H 1.09000 * 109.47050 * 60.00380 * 29 27 26 50 50 H 1.09001 * 109.46988 * 180.02562 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3210 1.0969 0.0000 4 6 1.8739 2.5027 0.0008 5 8 0.6861 2.7628 -0.0037 6 7 2.7818 3.4987 0.0065 7 6 2.3377 4.8948 0.0078 8 1 1.4231 4.9843 0.5938 9 6 2.0682 5.3453 -1.4297 10 6 3.3464 5.1855 -2.2588 11 7 4.4360 5.9122 -1.5929 12 6 5.1722 6.8439 -2.2748 13 1 4.7324 7.3784 -3.1038 14 6 6.4840 7.1014 -1.9006 15 7 7.1322 6.2436 -1.1416 16 14 7.3288 8.6655 -2.4742 17 1 6.3910 9.4567 -3.3106 18 1 7.7380 9.4685 -1.2938 19 1 8.5296 8.3146 -3.2744 20 6 4.7204 5.6204 -0.1813 21 6 3.4266 5.7756 0.6243 22 1 3.1073 6.8176 0.6028 23 6 3.6722 5.3459 2.0721 24 7 3.5984 0.6788 0.0051 25 7 3.6299 -0.6084 0.0034 26 7 2.3104 -1.0826 -0.0031 27 6 1.8863 -2.4849 -0.0065 28 6 2.4342 -3.1804 -1.2543 29 6 2.4239 -3.1833 1.2442 30 1 -0.3633 -0.0004 -1.0276 31 1 -0.3633 -0.8897 0.5142 32 1 -0.3633 0.8902 0.5134 33 1 3.7293 3.2911 0.0104 34 1 1.2762 4.7329 -1.8606 35 1 1.7617 6.3913 -1.4317 36 1 3.6039 4.1290 -2.3335 37 1 3.1890 5.5966 -3.2560 38 1 8.0489 6.4233 -0.8805 39 1 5.0899 4.5993 -0.0864 40 1 5.4695 6.3185 0.1924 41 1 3.9930 4.3044 2.0925 42 1 4.4482 5.9733 2.5107 43 1 2.7508 5.4536 2.6444 44 1 0.7975 -2.5352 -0.0111 45 1 3.5231 -3.1301 -1.2497 46 1 2.1191 -4.2239 -1.2566 47 1 2.0513 -2.6829 -2.1452 48 1 3.5127 -3.1331 1.2487 49 1 2.0335 -2.6878 2.1331 50 1 2.1087 -4.2267 1.2415 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000943777852.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:34:08 Heat of formation + Delta-G solvation = 67.290394 kcal Electronic energy + Delta-G solvation = -30327.532042 eV Core-core repulsion = 26392.122084 eV Total energy + Delta-G solvation = -3935.409958 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -42.29180 -39.59013 -37.50108 -36.61721 -34.18552 -33.11497 -32.17718 -31.76255 -30.94290 -29.47184 -27.84107 -27.81288 -25.83889 -25.19974 -24.09904 -23.25881 -21.85062 -20.91451 -20.47399 -20.04596 -18.42214 -17.76842 -16.81204 -16.39847 -16.24244 -15.34053 -14.89457 -14.77756 -14.66716 -14.23604 -13.94060 -13.83765 -13.61614 -13.45620 -13.33489 -13.21440 -13.11644 -12.92274 -12.72758 -12.66008 -12.50740 -12.03802 -11.99382 -11.92691 -11.62204 -11.38294 -11.14520 -11.06969 -10.94041 -10.87287 -10.66787 -10.30594 -10.25888 -10.05079 -9.88877 -9.78445 -9.63149 -9.34807 -9.12644 -8.52830 -8.38823 -6.61248 -5.74023 -3.15721 1.11103 1.85500 1.89717 3.40339 3.48440 3.50594 3.50934 3.56094 3.97666 4.13260 4.32177 4.42909 4.52474 4.54044 4.78453 4.91546 5.03272 5.11587 5.21111 5.23240 5.30577 5.35778 5.38934 5.49624 5.51523 5.63037 5.64648 5.66361 5.75295 5.76394 5.90922 5.97343 6.16077 6.24171 6.29224 6.37897 6.41890 6.55693 6.60764 6.65683 6.74496 6.85815 7.02130 7.09411 7.37692 7.68318 7.83058 7.85894 8.10912 8.49507 8.54020 9.25847 9.89444 10.46331 11.34199 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.017323 B = 0.002931 C = 0.002759 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1615.998359 B = 9549.188177 C =10147.566479 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 C 0.117 3.883 3 C -0.101 4.101 4 C 0.602 3.398 5 O -0.551 6.551 6 N -0.693 5.693 7 C 0.160 3.840 8 H 0.075 0.925 9 C -0.145 4.145 10 C 0.147 3.853 11 N -0.592 5.592 12 C -0.250 4.250 13 H 0.065 0.935 14 C 0.002 3.998 15 N -0.901 5.901 16 Si 0.900 3.100 17 H -0.278 1.278 18 H -0.289 1.289 19 H -0.291 1.291 20 C 0.177 3.823 21 C -0.127 4.127 22 H 0.078 0.922 23 C -0.140 4.140 24 N -0.198 5.198 25 N -0.066 5.066 26 N -0.360 5.360 27 C 0.145 3.855 28 C -0.163 4.163 29 C -0.163 4.163 30 H 0.089 0.911 31 H 0.070 0.930 32 H 0.112 0.888 33 H 0.411 0.589 34 H 0.056 0.944 35 H 0.068 0.932 36 H 0.018 0.982 37 H 0.051 0.949 38 H 0.253 0.747 39 H 0.018 0.982 40 H 0.091 0.909 41 H 0.050 0.950 42 H 0.055 0.945 43 H 0.044 0.956 44 H 0.108 0.892 45 H 0.075 0.925 46 H 0.081 0.919 47 H 0.064 0.936 48 H 0.075 0.925 49 H 0.063 0.937 50 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.052 -18.249 5.358 23.647 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.021 4.021 3 C -0.240 4.240 4 C 0.386 3.614 5 O -0.429 6.429 6 N -0.344 5.344 7 C 0.056 3.944 8 H 0.093 0.907 9 C -0.185 4.185 10 C 0.020 3.980 11 N -0.314 5.314 12 C -0.380 4.380 13 H 0.083 0.917 14 C -0.197 4.197 15 N -0.545 5.545 16 Si 0.730 3.270 17 H -0.203 1.203 18 H -0.216 1.216 19 H -0.218 1.218 20 C 0.051 3.949 21 C -0.148 4.148 22 H 0.097 0.903 23 C -0.198 4.198 24 N -0.071 5.071 25 N -0.045 5.045 26 N -0.148 5.148 27 C 0.043 3.957 28 C -0.221 4.221 29 C -0.221 4.221 30 H 0.108 0.892 31 H 0.089 0.911 32 H 0.131 0.869 33 H 0.249 0.751 34 H 0.075 0.925 35 H 0.086 0.914 36 H 0.035 0.965 37 H 0.070 0.930 38 H 0.063 0.937 39 H 0.036 0.964 40 H 0.109 0.891 41 H 0.069 0.931 42 H 0.074 0.926 43 H 0.063 0.937 44 H 0.126 0.874 45 H 0.094 0.906 46 H 0.100 0.900 47 H 0.083 0.917 48 H 0.094 0.906 49 H 0.082 0.918 50 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -13.202 -18.447 5.387 23.315 hybrid contribution 0.068 0.702 -0.322 0.776 sum -13.133 -17.745 5.065 22.650 Atomic orbital electron populations 1.20688 0.84958 1.05083 1.04494 1.21881 0.96109 0.86446 0.97637 1.21339 0.88969 0.95638 1.18093 1.16710 0.85674 0.82483 0.76519 1.90710 1.15978 1.83694 1.52547 1.45992 1.10501 1.05838 1.72029 1.20941 0.97385 0.79188 0.96841 0.90741 1.22381 0.99388 1.00873 0.95858 1.20861 0.87572 0.94876 0.94642 1.44060 1.36116 1.44623 1.06610 1.19216 0.92390 1.12435 1.13938 0.91686 1.25025 0.95812 0.98386 1.00459 1.70039 1.10449 1.33772 1.40249 0.86255 0.79300 0.83462 0.77947 1.20326 1.21612 1.21828 1.20808 0.91946 0.99247 0.82896 1.22127 0.98912 0.98874 0.94896 0.90322 1.21728 1.00620 1.01253 0.96151 1.74706 1.19013 1.03983 1.09356 1.81948 0.96106 1.03412 1.23052 1.50636 1.06449 1.07065 1.50607 1.21602 1.00323 0.75512 0.98249 1.22155 1.03334 1.00724 0.95853 1.22162 1.03378 1.00731 0.95810 0.89223 0.91079 0.86914 0.75088 0.92540 0.91383 0.96456 0.93007 0.93720 0.96407 0.89114 0.93064 0.92614 0.93737 0.87443 0.90605 0.90022 0.91684 0.90617 0.91762 0.90026 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.83 9.40 36.01 0.34 -0.49 16 2 C 0.12 1.45 7.02 -81.88 -0.57 0.87 16 3 C -0.10 -1.59 6.99 -83.55 -0.58 -2.18 16 4 C 0.60 10.31 7.78 -12.48 -0.10 10.21 16 5 O -0.55 -9.81 14.38 5.28 0.08 -9.73 16 6 N -0.69 -12.29 3.59 -54.82 -0.20 -12.49 16 7 C 0.16 2.87 2.21 -67.90 -0.15 2.72 16 8 H 0.07 1.30 7.58 -51.93 -0.39 0.91 16 9 C -0.14 -2.70 5.77 -26.61 -0.15 -2.85 16 10 C 0.15 3.20 6.26 -3.71 -0.02 3.17 16 11 N -0.59 -14.78 2.99 -172.32 -0.52 -15.30 16 12 C -0.25 -6.88 9.58 -15.06 -0.14 -7.03 16 13 H 0.07 1.77 7.89 -52.48 -0.41 1.36 16 14 C 0.00 0.05 4.91 -17.43 -0.09 -0.04 16 15 N -0.90 -26.11 11.19 55.49 0.62 -25.48 16 16 Si 0.90 21.83 29.59 -169.99 -5.03 16.80 16 17 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 18 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 19 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 20 C 0.18 4.12 4.30 -3.71 -0.02 4.11 16 21 C -0.13 -2.39 2.67 -90.51 -0.24 -2.63 16 22 H 0.08 1.51 8.14 -51.93 -0.42 1.08 16 23 C -0.14 -2.29 9.05 37.16 0.34 -1.95 16 24 N -0.20 -3.36 12.04 32.85 0.40 -2.96 16 25 N -0.07 -0.99 13.67 60.35 0.82 -0.16 16 26 N -0.36 -4.09 3.28 -50.40 -0.17 -4.25 16 27 C 0.14 0.99 3.68 -67.93 -0.25 0.74 16 28 C -0.16 -1.00 9.47 37.16 0.35 -0.65 16 29 C -0.16 -0.96 9.47 37.16 0.35 -0.60 16 30 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 31 H 0.07 0.40 7.19 -51.93 -0.37 0.03 16 32 H 0.11 1.19 6.43 -51.93 -0.33 0.86 16 33 H 0.41 7.80 6.41 -40.82 -0.26 7.53 16 34 H 0.06 1.02 8.14 -51.93 -0.42 0.59 16 35 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 36 H 0.02 0.40 7.74 -51.93 -0.40 -0.01 16 37 H 0.05 1.12 7.93 -51.93 -0.41 0.71 16 38 H 0.25 7.10 8.31 -40.82 -0.34 6.76 16 39 H 0.02 0.44 6.64 -51.93 -0.34 0.10 16 40 H 0.09 2.39 6.04 -51.93 -0.31 2.07 16 41 H 0.05 0.84 7.54 -51.93 -0.39 0.45 16 42 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 43 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 44 H 0.11 0.47 6.79 -51.93 -0.35 0.11 16 45 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 46 H 0.08 0.29 8.14 -51.93 -0.42 -0.13 16 47 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 48 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 49 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 50 H 0.08 0.27 8.14 -51.93 -0.42 -0.15 16 LS Contribution 394.81 15.07 5.95 5.95 Total: -1.00 -32.23 394.81 -7.18 -39.42 By element: Atomic # 1 Polarization: 13.02 SS G_CDS: -8.20 Total: 4.82 kcal Atomic # 6 Polarization: 4.33 SS G_CDS: -0.94 Total: 3.39 kcal Atomic # 7 Polarization: -61.61 SS G_CDS: 0.96 Total: -60.65 kcal Atomic # 8 Polarization: -9.81 SS G_CDS: 0.08 Total: -9.73 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -5.03 Total: 16.80 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -32.23 -7.18 -39.42 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000943777852.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.709 kcal (2) G-P(sol) polarization free energy of solvation -32.235 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.475 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.184 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.419 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.290 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds