Wall clock time and date at job start Tue Mar 31 2020 18:34:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.36590 * 126.57799 * 2 1 4 4 C 1.47519 * 125.77783 * 0.03692 * 3 2 1 5 5 O 1.21598 * 119.99753 * 359.71781 * 4 3 2 6 6 N 1.34773 * 120.00672 * 179.71685 * 4 3 2 7 7 C 1.46498 * 120.00626 * 180.02562 * 6 4 3 8 8 H 1.08997 * 109.45865 * 34.99256 * 7 6 4 9 9 C 1.53037 * 109.45573 * 275.02896 * 7 6 4 10 10 C 1.53192 * 109.31368 * 301.35249 * 9 7 6 11 11 N 1.46926 * 108.77491 * 305.36749 * 10 9 7 12 12 C 1.36936 * 120.63308 * 233.62681 * 11 10 9 13 13 H 1.08003 * 119.99957 * 27.66926 * 12 11 10 14 14 C 1.38813 * 120.00210 * 207.67838 * 12 11 10 15 15 N 1.31616 * 120.00052 * 17.35181 * 14 12 11 16 16 Si 1.86800 * 119.99664 * 197.36398 * 14 12 11 17 17 H 1.48499 * 109.47549 * 359.97438 * 16 14 12 18 18 H 1.48503 * 109.46986 * 119.99726 * 16 14 12 19 19 H 1.48508 * 109.46812 * 239.99182 * 16 14 12 20 20 C 1.46925 * 118.73589 * 53.60981 * 11 10 9 21 21 C 1.53027 * 109.46240 * 154.97198 * 7 6 4 22 22 H 1.09004 * 109.49946 * 178.59256 * 21 7 6 23 23 C 1.53000 * 109.50097 * 298.68724 * 21 7 6 24 24 N 1.34409 * 108.45535 * 179.77074 * 3 2 1 25 25 N 1.28761 * 109.52181 * 0.22853 * 24 3 2 26 26 N 1.34813 * 126.57741 * 180.16588 * 2 1 3 27 27 C 1.46503 * 126.59505 * 359.96681 * 26 2 1 28 28 C 1.53003 * 109.46979 * 120.27583 * 27 26 2 29 29 C 1.53003 * 109.46901 * 240.27539 * 27 26 2 30 30 H 1.08996 * 109.46945 * 90.02263 * 1 2 3 31 31 H 1.08993 * 109.47032 * 210.02744 * 1 2 3 32 32 H 1.09001 * 109.47149 * 330.02522 * 1 2 3 33 33 H 0.97002 * 119.99318 * 359.97438 * 6 4 3 34 34 H 1.08992 * 109.50482 * 61.30655 * 9 7 6 35 35 H 1.08999 * 109.49605 * 181.40344 * 9 7 6 36 36 H 1.09001 * 109.58913 * 65.15643 * 10 9 7 37 37 H 1.08999 * 109.58885 * 185.57986 * 10 9 7 38 38 H 0.96997 * 119.99694 * 179.97438 * 15 14 12 39 39 H 1.09005 * 109.59008 * 66.18199 * 20 11 10 40 40 H 1.09002 * 109.58398 * 186.60324 * 20 11 10 41 41 H 1.09003 * 109.46865 * 60.00385 * 23 21 7 42 42 H 1.09000 * 109.47699 * 179.97438 * 23 21 7 43 43 H 1.09003 * 109.47323 * 300.00434 * 23 21 7 44 44 H 1.08995 * 109.47351 * 0.27490 * 27 26 2 45 45 H 1.09001 * 109.46796 * 60.00012 * 28 27 26 46 46 H 1.09001 * 109.47071 * 179.97438 * 28 27 26 47 47 H 1.08992 * 109.46977 * 299.99902 * 28 27 26 48 48 H 1.08995 * 109.47330 * 299.99629 * 29 27 26 49 49 H 1.09000 * 109.47050 * 60.00380 * 29 27 26 50 50 H 1.09001 * 109.46988 * 180.02562 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3210 1.0969 0.0000 4 6 1.8739 2.5027 0.0008 5 8 0.6861 2.7628 -0.0037 6 7 2.7818 3.4987 0.0065 7 6 2.3377 4.8948 0.0078 8 1 1.4231 4.9843 0.5938 9 6 2.0682 5.3453 -1.4297 10 6 3.3464 5.1855 -2.2588 11 7 4.4360 5.9122 -1.5929 12 6 5.1722 6.8439 -2.2748 13 1 4.7324 7.3784 -3.1038 14 6 6.4840 7.1014 -1.9006 15 7 7.1322 6.2436 -1.1416 16 14 7.3288 8.6655 -2.4742 17 1 6.3910 9.4567 -3.3106 18 1 7.7380 9.4685 -1.2938 19 1 8.5296 8.3146 -3.2744 20 6 4.7204 5.6204 -0.1813 21 6 3.4266 5.7756 0.6243 22 1 3.1073 6.8176 0.6028 23 6 3.6722 5.3459 2.0721 24 7 3.5984 0.6788 0.0051 25 7 3.6299 -0.6084 0.0034 26 7 2.3104 -1.0826 -0.0031 27 6 1.8863 -2.4849 -0.0065 28 6 2.4342 -3.1804 -1.2543 29 6 2.4239 -3.1833 1.2442 30 1 -0.3633 -0.0004 -1.0276 31 1 -0.3633 -0.8897 0.5142 32 1 -0.3633 0.8902 0.5134 33 1 3.7293 3.2911 0.0104 34 1 1.2762 4.7329 -1.8606 35 1 1.7617 6.3913 -1.4317 36 1 3.6039 4.1290 -2.3335 37 1 3.1890 5.5966 -3.2560 38 1 8.0489 6.4233 -0.8805 39 1 5.0899 4.5993 -0.0864 40 1 5.4695 6.3185 0.1924 41 1 3.9930 4.3044 2.0925 42 1 4.4482 5.9733 2.5107 43 1 2.7508 5.4536 2.6444 44 1 0.7975 -2.5352 -0.0111 45 1 3.5231 -3.1301 -1.2497 46 1 2.1191 -4.2239 -1.2566 47 1 2.0513 -2.6829 -2.1452 48 1 3.5127 -3.1331 1.2487 49 1 2.0335 -2.6878 2.1331 50 1 2.1087 -4.2267 1.2415 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000943777852.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:34:07 Heat of formation + Delta-G solvation = 46.743895 kcal Electronic energy + Delta-G solvation = -30328.423005 eV Core-core repulsion = 26392.122084 eV Total energy + Delta-G solvation = -3936.300921 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -43.32405 -41.02434 -39.03339 -37.35959 -35.93329 -34.05701 -33.67143 -33.51295 -32.06652 -31.09952 -28.79883 -28.28145 -27.52220 -26.99994 -25.04179 -24.52020 -23.48989 -22.56259 -21.51544 -21.11265 -20.00227 -18.90895 -18.58911 -17.40671 -17.25712 -16.89271 -16.60745 -16.06578 -15.73083 -15.47211 -15.31593 -15.21938 -15.06263 -14.68948 -14.62132 -14.29372 -14.13619 -13.96566 -13.95251 -13.58941 -13.23264 -13.20100 -13.05950 -12.94877 -12.93041 -12.76502 -12.55417 -12.53027 -12.47853 -12.37639 -12.13472 -11.91278 -11.78455 -11.69052 -11.44882 -11.14338 -11.11741 -11.00511 -10.54320 -10.24925 -9.86501 -8.65400 -7.85118 -5.30164 0.14332 0.64584 1.08440 1.46664 1.48634 1.59169 2.21922 2.29090 2.52486 3.19757 3.28758 3.32960 3.57424 3.67924 3.73607 3.81099 3.87469 3.98077 4.07032 4.13439 4.20834 4.36488 4.53488 4.60626 4.62117 4.63681 4.65914 4.69044 4.73542 4.75209 4.75853 4.85331 4.88509 4.97385 5.04777 5.10207 5.11991 5.17853 5.19786 5.23189 5.30449 5.37626 5.51711 5.58029 5.64069 5.67295 5.78370 6.40808 6.49959 6.93652 7.16690 7.19066 7.87131 8.39528 9.20749 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.017323 B = 0.002931 C = 0.002759 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1615.998359 B = 9549.188177 C =10147.566479 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.091 4.091 2 C 0.132 3.868 3 C -0.134 4.134 4 C 0.604 3.396 5 O -0.558 6.558 6 N -0.698 5.698 7 C 0.167 3.833 8 H 0.090 0.910 9 C -0.132 4.132 10 C 0.148 3.852 11 N -0.607 5.607 12 C -0.262 4.262 13 H 0.065 0.935 14 C -0.049 4.049 15 N -0.931 5.931 16 Si 0.966 3.034 17 H -0.268 1.268 18 H -0.289 1.289 19 H -0.295 1.295 20 C 0.189 3.811 21 C -0.115 4.115 22 H 0.079 0.921 23 C -0.132 4.132 24 N -0.234 5.234 25 N -0.090 5.090 26 N -0.345 5.345 27 C 0.131 3.869 28 C -0.160 4.160 29 C -0.159 4.159 30 H 0.104 0.896 31 H 0.111 0.889 32 H 0.097 0.903 33 H 0.404 0.596 34 H 0.067 0.933 35 H 0.074 0.926 36 H 0.004 0.996 37 H 0.049 0.951 38 H 0.249 0.751 39 H -0.003 1.003 40 H 0.057 0.943 41 H 0.045 0.955 42 H 0.054 0.946 43 H 0.069 0.931 44 H 0.146 0.854 45 H 0.052 0.948 46 H 0.115 0.885 47 H 0.057 0.943 48 H 0.053 0.947 49 H 0.059 0.941 50 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.822 -19.604 5.725 26.459 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.008 4.008 3 C -0.274 4.274 4 C 0.390 3.610 5 O -0.438 6.438 6 N -0.348 5.348 7 C 0.062 3.938 8 H 0.108 0.892 9 C -0.172 4.172 10 C 0.023 3.977 11 N -0.331 5.331 12 C -0.392 4.392 13 H 0.083 0.917 14 C -0.245 4.245 15 N -0.577 5.577 16 Si 0.794 3.206 17 H -0.192 1.192 18 H -0.215 1.215 19 H -0.222 1.222 20 C 0.063 3.937 21 C -0.136 4.136 22 H 0.098 0.902 23 C -0.190 4.190 24 N -0.107 5.107 25 N -0.069 5.069 26 N -0.132 5.132 27 C 0.032 3.968 28 C -0.218 4.218 29 C -0.217 4.217 30 H 0.122 0.878 31 H 0.130 0.870 32 H 0.116 0.884 33 H 0.240 0.760 34 H 0.085 0.915 35 H 0.093 0.907 36 H 0.022 0.978 37 H 0.068 0.932 38 H 0.058 0.942 39 H 0.015 0.985 40 H 0.075 0.925 41 H 0.064 0.936 42 H 0.073 0.927 43 H 0.088 0.912 44 H 0.163 0.837 45 H 0.072 0.928 46 H 0.134 0.866 47 H 0.076 0.924 48 H 0.072 0.928 49 H 0.079 0.921 50 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -15.996 -19.835 5.752 26.123 hybrid contribution 0.876 0.957 -0.478 1.382 sum -15.120 -18.878 5.275 24.755 Atomic orbital electron populations 1.20840 0.82011 1.06356 1.05699 1.22388 0.97541 0.85598 0.95252 1.21382 0.89479 0.95864 1.20642 1.16861 0.85399 0.82935 0.75839 1.90690 1.16004 1.84040 1.53020 1.45995 1.10191 1.05974 1.72610 1.20865 0.97329 0.79213 0.96344 0.89233 1.22239 0.97604 1.01557 0.95814 1.20903 0.88157 0.93602 0.95087 1.44311 1.36579 1.44727 1.07437 1.19517 0.92816 1.12833 1.14006 0.91740 1.25762 0.96492 1.01121 1.01082 1.70195 1.10474 1.35390 1.41655 0.85237 0.78006 0.79960 0.77395 1.19197 1.21526 1.22195 1.20578 0.93422 0.96861 0.82837 1.21934 0.96628 0.99339 0.95673 0.90241 1.21657 1.01863 1.00791 0.94662 1.74676 1.20254 1.05036 1.10697 1.81839 0.98350 1.02805 1.23892 1.51010 1.05104 1.08590 1.48543 1.22219 1.02538 0.73046 0.98961 1.22167 1.01856 1.02608 0.95140 1.22170 1.01938 1.02563 0.95041 0.87790 0.87012 0.88398 0.76015 0.91482 0.90691 0.97798 0.93232 0.94163 0.98540 0.92455 0.93567 0.92681 0.91184 0.83674 0.92849 0.86645 0.92427 0.92811 0.92147 0.86701 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.31 9.40 71.24 0.67 -0.64 16 2 C 0.13 3.05 7.02 41.72 0.29 3.35 16 3 C -0.13 -4.23 6.99 40.81 0.29 -3.95 16 4 C 0.60 20.56 7.78 86.69 0.67 21.24 16 5 O -0.56 -19.19 14.38 -4.02 -0.06 -19.25 16 6 N -0.70 -25.02 3.59 -445.62 -1.60 -26.62 16 7 C 0.17 5.84 2.21 45.01 0.10 5.94 16 8 H 0.09 2.95 7.58 -2.39 -0.02 2.93 16 9 C -0.13 -4.83 5.77 30.67 0.18 -4.65 16 10 C 0.15 6.55 6.26 86.36 0.54 7.09 16 11 N -0.61 -31.13 2.99 -699.09 -2.09 -33.22 16 12 C -0.26 -14.67 9.58 84.03 0.81 -13.86 16 13 H 0.06 3.55 7.89 -2.91 -0.02 3.53 16 14 C -0.05 -2.78 4.91 84.86 0.42 -2.36 16 15 N -0.93 -55.83 11.19 21.65 0.24 -55.58 16 16 Si 0.97 45.68 29.59 68.60 2.03 47.71 16 17 H -0.27 -12.06 7.11 99.48 0.71 -11.36 16 18 H -0.29 -13.52 7.11 99.48 0.71 -12.81 16 19 H -0.29 -14.03 7.11 99.48 0.71 -13.32 16 20 C 0.19 9.10 4.30 86.36 0.37 9.47 16 21 C -0.12 -4.32 2.67 -10.72 -0.03 -4.35 16 22 H 0.08 2.98 8.14 -2.39 -0.02 2.97 16 23 C -0.13 -4.25 9.05 71.98 0.65 -3.59 16 24 N -0.23 -8.26 12.04 -50.00 -0.60 -8.86 16 25 N -0.09 -2.74 13.67 37.02 0.51 -2.23 16 26 N -0.35 -7.37 3.28 -313.38 -1.03 -8.40 16 27 C 0.13 1.41 3.68 44.99 0.17 1.58 16 28 C -0.16 -1.61 9.47 71.98 0.68 -0.93 16 29 C -0.16 -1.47 9.47 71.98 0.68 -0.79 16 30 H 0.10 1.28 8.14 -2.39 -0.02 1.26 16 31 H 0.11 0.70 7.19 -2.39 -0.02 0.68 16 32 H 0.10 1.82 6.43 -2.39 -0.02 1.81 16 33 H 0.40 15.98 6.41 -92.71 -0.59 15.38 16 34 H 0.07 2.32 8.14 -2.39 -0.02 2.30 16 35 H 0.07 2.65 8.14 -2.39 -0.02 2.63 16 36 H 0.00 0.19 7.74 -2.39 -0.02 0.17 16 37 H 0.05 2.17 7.93 -2.39 -0.02 2.15 16 38 H 0.25 14.48 8.31 -92.71 -0.77 13.71 16 39 H 0.00 -0.17 6.64 -2.38 -0.02 -0.19 16 40 H 0.06 3.14 6.04 -2.39 -0.01 3.13 16 41 H 0.05 1.53 7.54 -2.39 -0.02 1.51 16 42 H 0.05 1.76 8.14 -2.39 -0.02 1.75 16 43 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16 44 H 0.15 0.52 6.79 -2.39 -0.02 0.51 16 45 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 46 H 0.12 0.39 8.14 -2.39 -0.02 0.37 16 47 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 48 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 49 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 50 H 0.11 0.31 8.14 -2.39 -0.02 0.29 16 Total: -1.00 -73.10 394.81 4.23 -68.87 By element: Atomic # 1 Polarization: 23.69 SS G_CDS: 0.35 Total: 24.04 kcal Atomic # 6 Polarization: 7.05 SS G_CDS: 6.48 Total: 13.54 kcal Atomic # 7 Polarization: -130.34 SS G_CDS: -4.58 Total: -134.92 kcal Atomic # 8 Polarization: -19.19 SS G_CDS: -0.06 Total: -19.25 kcal Atomic # 14 Polarization: 45.68 SS G_CDS: 2.03 Total: 47.71 kcal Total: -73.10 4.23 -68.87 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000943777852.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.618 kcal (2) G-P(sol) polarization free energy of solvation -73.099 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.518 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.226 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.874 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.744 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds