Wall clock time and date at job start Tue Mar 31 2020 18:34:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.36600 * 126.57874 * 2 1 4 4 C 1.47512 * 125.77115 * 0.03999 * 3 2 1 5 5 O 1.21593 * 120.00489 * 359.71195 * 4 3 2 6 6 N 1.34776 * 120.00030 * 179.71925 * 4 3 2 7 7 C 1.46503 * 120.00344 * 179.97438 * 6 4 3 8 8 H 1.09000 * 109.44800 * 324.96074 * 7 6 4 9 9 C 1.53048 * 109.45981 * 84.92630 * 7 6 4 10 10 C 1.53191 * 109.30721 * 58.65835 * 9 7 6 11 11 N 1.47199 * 108.85944 * 54.65426 * 10 9 7 12 12 C 1.36935 * 120.81754 * 126.33179 * 11 10 9 13 13 H 1.08004 * 119.99817 * 207.53569 * 12 11 10 14 14 C 1.38804 * 120.00238 * 27.53769 * 12 11 10 15 15 N 1.31624 * 120.00025 * 17.25587 * 14 12 11 16 16 Si 1.86801 * 120.00311 * 197.25673 * 14 12 11 17 17 H 1.48505 * 109.47002 * 90.00337 * 16 14 12 18 18 H 1.48506 * 109.47209 * 209.99842 * 16 14 12 19 19 H 1.48497 * 109.47373 * 330.00036 * 16 14 12 20 20 C 1.46936 * 118.55327 * 306.47272 * 11 10 9 21 21 C 1.53035 * 109.46240 * 204.99702 * 7 6 4 22 22 H 1.08994 * 109.50151 * 181.39462 * 21 7 6 23 23 C 1.53001 * 109.52418 * 61.30952 * 21 7 6 24 24 N 1.34403 * 108.45441 * 179.77480 * 3 2 1 25 25 N 1.28765 * 109.52571 * 0.22435 * 24 3 2 26 26 N 1.34813 * 126.57845 * 180.16548 * 2 1 3 27 27 C 1.46500 * 126.59749 * 0.02562 * 26 2 1 28 28 C 1.53002 * 109.47251 * 120.26759 * 27 26 2 29 29 C 1.52998 * 109.47159 * 240.27148 * 27 26 2 30 30 H 1.09000 * 109.47028 * 90.02396 * 1 2 3 31 31 H 1.08993 * 109.47005 * 210.02756 * 1 2 3 32 32 H 1.09006 * 109.46810 * 330.02098 * 1 2 3 33 33 H 0.97001 * 120.00122 * 359.97438 * 6 4 3 34 34 H 1.08997 * 109.49500 * 178.60527 * 9 7 6 35 35 H 1.08993 * 109.49476 * 298.67386 * 9 7 6 36 36 H 1.09006 * 109.57853 * 174.41953 * 10 9 7 37 37 H 1.08996 * 109.58759 * 294.84139 * 10 9 7 38 38 H 0.96996 * 120.00327 * 179.97438 * 15 14 12 39 39 H 1.08995 * 109.58629 * 293.68338 * 20 11 10 40 40 H 1.08992 * 109.58520 * 173.40016 * 20 11 10 41 41 H 1.08997 * 109.47086 * 300.14277 * 23 21 7 42 42 H 1.09001 * 109.47255 * 60.15072 * 23 21 7 43 43 H 1.09003 * 109.47289 * 180.14900 * 23 21 7 44 44 H 1.08998 * 109.46887 * 0.27117 * 27 26 2 45 45 H 1.08995 * 109.46768 * 180.02562 * 28 27 26 46 46 H 1.09002 * 109.46965 * 300.00188 * 28 27 26 47 47 H 1.08998 * 109.46882 * 60.00356 * 28 27 26 48 48 H 1.09008 * 109.47038 * 59.99950 * 29 27 26 49 49 H 1.08997 * 109.46801 * 179.97438 * 29 27 26 50 50 H 1.08998 * 109.47196 * 299.99780 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3211 1.0970 0.0000 4 6 1.8738 2.5026 0.0008 5 8 0.6861 2.7628 -0.0037 6 7 2.7818 3.4987 0.0065 7 6 2.3376 4.8948 0.0067 8 1 1.4283 4.9865 -0.5873 9 6 2.0551 5.3397 1.4436 10 6 3.3259 5.1768 2.2834 11 7 4.4244 5.9075 1.6307 12 6 5.1559 6.8371 2.3205 13 1 5.6234 7.6558 1.7934 14 6 5.2967 6.7274 3.6970 15 7 5.0341 5.5854 4.2965 16 14 5.8587 8.2004 4.6989 17 1 4.6747 8.9852 5.1322 18 1 6.6053 7.7308 5.8936 19 1 6.7427 9.0563 3.8676 20 6 4.7184 5.6202 0.2200 21 6 3.4320 5.7781 -0.5967 22 1 3.1123 6.8199 -0.5742 23 6 3.6908 5.3545 -2.0440 24 7 3.5984 0.6789 0.0050 25 7 3.6299 -0.6084 0.0034 26 7 2.3105 -1.0826 -0.0031 27 6 1.8864 -2.4849 -0.0077 28 6 2.4352 -3.1796 -1.2556 29 6 2.4231 -3.1840 1.2429 30 1 -0.3633 -0.0004 -1.0277 31 1 -0.3633 -0.8897 0.5142 32 1 -0.3633 0.8902 0.5135 33 1 3.7293 3.2912 0.0103 34 1 1.7484 6.3856 1.4469 35 1 1.2590 4.7257 1.8646 36 1 3.1593 5.5840 3.2807 37 1 3.5828 4.1201 2.3562 38 1 5.1328 5.5085 5.2583 39 1 5.0889 4.5996 0.1245 40 1 5.4715 6.3181 -0.1457 41 1 4.0095 4.3124 -2.0661 42 1 2.7754 5.4671 -2.6248 43 1 4.4722 5.9825 -2.4721 44 1 0.7976 -2.5352 -0.0131 45 1 2.1193 -4.2228 -1.2591 46 1 2.0528 -2.6815 -2.1465 47 1 3.5240 -3.1293 -1.2502 48 1 2.0320 -2.6891 2.1319 49 1 2.1072 -4.2272 1.2397 50 1 3.5119 -3.1338 1.2483 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000943777853.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:34:11 Heat of formation + Delta-G solvation = 46.246571 kcal Electronic energy + Delta-G solvation = -30336.493323 eV Core-core repulsion = 26400.170836 eV Total energy + Delta-G solvation = -3936.322487 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -43.32670 -41.02771 -39.03313 -37.36313 -35.98637 -34.15386 -33.81612 -32.88121 -32.26005 -31.35568 -28.82083 -28.28324 -27.39372 -26.99560 -25.04001 -24.49522 -23.45905 -22.70954 -21.52993 -21.11455 -19.99936 -18.90234 -18.56461 -17.40470 -17.26121 -16.87970 -16.67330 -16.02327 -15.73043 -15.50552 -15.37828 -15.24158 -15.07662 -14.70587 -14.58895 -14.27543 -14.13375 -13.96869 -13.95631 -13.52011 -13.24432 -13.20220 -13.13993 -12.96801 -12.94955 -12.69524 -12.53636 -12.53147 -12.41185 -12.34062 -12.16371 -11.93536 -11.92271 -11.66286 -11.46458 -11.15874 -11.10214 -11.01156 -10.53187 -10.25479 -9.88064 -8.66487 -7.85364 -5.30741 0.13602 0.64225 1.07560 1.46853 1.48387 1.57103 2.19051 2.31252 2.52026 3.18893 3.28926 3.32391 3.56635 3.67159 3.73115 3.80834 3.83885 3.97675 4.09349 4.12480 4.14393 4.42427 4.52989 4.61321 4.61607 4.63359 4.66216 4.69161 4.72363 4.74708 4.79502 4.81210 4.86281 4.99103 5.04201 5.09883 5.14114 5.17634 5.20316 5.22833 5.30900 5.44527 5.51116 5.57136 5.62020 5.66115 5.75386 6.39036 6.49304 6.93135 7.14911 7.19042 7.86442 8.39234 9.20701 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.015207 B = 0.003060 C = 0.002822 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1840.829227 B = 9147.817345 C = 9918.877200 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.091 4.091 2 C 0.130 3.870 3 C -0.133 4.133 4 C 0.603 3.397 5 O -0.560 6.560 6 N -0.696 5.696 7 C 0.167 3.833 8 H 0.089 0.911 9 C -0.141 4.141 10 C 0.188 3.812 11 N -0.607 5.607 12 C -0.259 4.259 13 H 0.071 0.929 14 C -0.053 4.053 15 N -0.936 5.936 16 Si 0.967 3.033 17 H -0.286 1.286 18 H -0.298 1.298 19 H -0.266 1.266 20 C 0.148 3.852 21 C -0.105 4.105 22 H 0.085 0.915 23 C -0.133 4.133 24 N -0.232 5.232 25 N -0.088 5.088 26 N -0.345 5.345 27 C 0.131 3.869 28 C -0.157 4.157 29 C -0.161 4.161 30 H 0.109 0.891 31 H 0.109 0.891 32 H 0.093 0.907 33 H 0.404 0.596 34 H 0.068 0.932 35 H 0.052 0.948 36 H 0.048 0.952 37 H -0.009 1.009 38 H 0.247 0.753 39 H 0.011 0.989 40 H 0.059 0.941 41 H 0.048 0.952 42 H 0.066 0.934 43 H 0.068 0.932 44 H 0.145 0.855 45 H 0.114 0.886 46 H 0.060 0.940 47 H 0.054 0.946 48 H 0.054 0.946 49 H 0.116 0.884 50 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.664 -18.007 -13.302 25.244 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.009 4.009 3 C -0.273 4.273 4 C 0.388 3.612 5 O -0.440 6.440 6 N -0.346 5.346 7 C 0.063 3.937 8 H 0.107 0.893 9 C -0.181 4.181 10 C 0.062 3.938 11 N -0.330 5.330 12 C -0.389 4.389 13 H 0.088 0.912 14 C -0.248 4.248 15 N -0.582 5.582 16 Si 0.796 3.204 17 H -0.213 1.213 18 H -0.225 1.225 19 H -0.191 1.191 20 C 0.023 3.977 21 C -0.126 4.126 22 H 0.104 0.896 23 C -0.191 4.191 24 N -0.104 5.104 25 N -0.068 5.068 26 N -0.132 5.132 27 C 0.032 3.968 28 C -0.215 4.215 29 C -0.219 4.219 30 H 0.128 0.872 31 H 0.128 0.872 32 H 0.112 0.888 33 H 0.241 0.759 34 H 0.087 0.913 35 H 0.071 0.929 36 H 0.067 0.933 37 H 0.009 0.991 38 H 0.056 0.944 39 H 0.029 0.971 40 H 0.077 0.923 41 H 0.067 0.933 42 H 0.085 0.915 43 H 0.087 0.913 44 H 0.162 0.838 45 H 0.133 0.867 46 H 0.079 0.921 47 H 0.073 0.927 48 H 0.073 0.927 49 H 0.134 0.866 50 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -10.946 -18.279 -13.149 25.037 hybrid contribution 0.298 0.809 1.228 1.500 sum -10.649 -17.470 -11.921 23.679 Atomic orbital electron populations 1.20833 0.82144 1.06107 1.05850 1.22377 0.97530 0.85679 0.95307 1.21360 0.89569 0.95794 1.20610 1.16890 0.85436 0.83056 0.75801 1.90690 1.16188 1.84062 1.53013 1.45921 1.10122 1.05915 1.72613 1.20872 0.97751 0.79359 0.95728 0.89322 1.22385 0.98265 1.00875 0.96621 1.20440 0.85544 0.92606 0.95209 1.44348 1.34978 1.45872 1.07834 1.19541 1.26682 1.02218 0.90430 0.91166 1.25807 1.01228 0.98771 0.99039 1.70220 1.54676 1.24483 1.08819 0.85261 0.77717 0.79390 0.78042 1.21312 1.22496 1.19090 1.21070 0.95189 0.97340 0.84151 1.21791 0.95555 0.99589 0.95646 0.89630 1.21691 1.02336 1.01178 0.93882 1.74632 1.20114 1.05023 1.10674 1.81816 0.98310 1.02795 1.23833 1.50990 1.05097 1.08556 1.48595 1.22221 1.02519 0.73041 0.99011 1.22152 1.01901 1.02527 0.94933 1.22184 1.01972 1.02621 0.95137 0.87248 0.87244 0.88848 0.75941 0.91321 0.92895 0.93322 0.99079 0.94377 0.97111 0.92264 0.93304 0.91501 0.91316 0.83782 0.86722 0.92065 0.92691 0.92651 0.86593 0.92760 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.44 9.40 71.24 0.67 -0.77 16 2 C 0.13 3.17 7.02 41.72 0.29 3.46 16 3 C -0.13 -4.34 6.99 40.81 0.29 -4.05 16 4 C 0.60 21.24 7.78 86.69 0.67 21.92 16 5 O -0.56 -20.32 14.38 -4.01 -0.06 -20.37 16 6 N -0.70 -25.00 3.59 -445.59 -1.60 -26.60 16 7 C 0.17 5.88 2.21 45.02 0.10 5.98 16 8 H 0.09 2.95 7.58 -2.39 -0.02 2.93 16 9 C -0.14 -5.82 5.77 30.67 0.18 -5.64 16 10 C 0.19 9.57 5.07 86.31 0.44 10.01 16 11 N -0.61 -31.06 3.01 -698.39 -2.10 -33.16 16 12 C -0.26 -14.45 9.59 84.03 0.81 -13.64 16 13 H 0.07 3.79 7.89 -2.91 -0.02 3.76 16 14 C -0.05 -3.06 4.92 84.86 0.42 -2.64 16 15 N -0.94 -57.45 11.18 21.65 0.24 -57.21 16 16 Si 0.97 46.06 29.59 68.60 2.03 48.09 16 17 H -0.29 -13.43 7.11 99.48 0.71 -12.72 16 18 H -0.30 -14.37 7.11 99.48 0.71 -13.66 16 19 H -0.27 -11.98 7.11 99.48 0.71 -11.28 16 20 C 0.15 6.14 5.49 86.36 0.47 6.61 16 21 C -0.11 -3.50 2.67 -10.72 -0.03 -3.52 16 22 H 0.09 2.82 8.14 -2.39 -0.02 2.80 16 23 C -0.13 -3.50 9.06 71.98 0.65 -2.84 16 24 N -0.23 -8.17 12.04 -50.00 -0.60 -8.78 16 25 N -0.09 -2.71 13.67 37.02 0.51 -2.20 16 26 N -0.35 -7.60 3.28 -313.38 -1.03 -8.63 16 27 C 0.13 1.49 3.68 44.99 0.17 1.66 16 28 C -0.16 -1.46 9.47 71.98 0.68 -0.78 16 29 C -0.16 -1.77 9.47 71.98 0.68 -1.09 16 30 H 0.11 1.34 8.14 -2.39 -0.02 1.32 16 31 H 0.11 0.89 7.20 -2.39 -0.02 0.88 16 32 H 0.09 1.97 6.43 -2.38 -0.02 1.96 16 33 H 0.40 15.35 6.41 -92.71 -0.59 14.75 16 34 H 0.07 2.75 8.14 -2.39 -0.02 2.73 16 35 H 0.05 2.18 8.14 -2.39 -0.02 2.16 16 36 H 0.05 2.82 6.04 -2.38 -0.01 2.81 16 37 H -0.01 -0.49 7.74 -2.39 -0.02 -0.51 16 38 H 0.25 14.77 8.31 -92.71 -0.77 14.00 16 39 H 0.01 0.47 6.64 -2.39 -0.02 0.46 16 40 H 0.06 2.39 7.93 -2.39 -0.02 2.37 16 41 H 0.05 1.33 7.53 -2.39 -0.02 1.31 16 42 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 43 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 44 H 0.14 0.64 6.79 -2.39 -0.02 0.63 16 45 H 0.11 0.33 8.14 -2.39 -0.02 0.31 16 46 H 0.06 0.62 8.14 -2.39 -0.02 0.61 16 47 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 48 H 0.05 0.73 8.14 -2.38 -0.02 0.71 16 49 H 0.12 0.48 8.14 -2.39 -0.02 0.46 16 50 H 0.05 0.84 8.14 -2.39 -0.02 0.83 16 Total: -1.00 -74.96 394.85 4.22 -70.74 By element: Atomic # 1 Polarization: 23.14 SS G_CDS: 0.35 Total: 23.48 kcal Atomic # 6 Polarization: 8.15 SS G_CDS: 6.49 Total: 14.64 kcal Atomic # 7 Polarization: -132.00 SS G_CDS: -4.58 Total: -136.58 kcal Atomic # 8 Polarization: -20.32 SS G_CDS: -0.06 Total: -20.37 kcal Atomic # 14 Polarization: 46.06 SS G_CDS: 2.03 Total: 48.09 kcal Total: -74.96 4.22 -70.74 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000943777853.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.982 kcal (2) G-P(sol) polarization free energy of solvation -74.956 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.026 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.221 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.735 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.247 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds