Wall clock time and date at job start Tue Mar 31 2020 20:03:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50708 * 109.46751 * 2 1 4 4 C 1.36591 * 126.57754 * 270.01952 * 3 2 1 5 5 C 1.47520 * 125.77297 * 359.96414 * 4 3 2 6 6 O 1.21597 * 119.99988 * 359.97438 * 5 4 3 7 7 N 1.34785 * 120.00424 * 179.97438 * 5 4 3 8 8 C 1.46497 * 120.00223 * 179.97438 * 7 5 4 9 9 H 1.09000 * 109.46041 * 325.02799 * 8 7 5 10 10 C 1.53041 * 109.45635 * 85.00290 * 8 7 5 11 11 C 1.53190 * 109.31734 * 58.65530 * 10 8 7 12 12 N 1.46923 * 108.77504 * 54.63061 * 11 10 8 13 13 C 1.36939 * 120.63432 * 126.41349 * 12 11 10 14 14 H 1.07995 * 120.00867 * 209.01303 * 13 12 11 15 15 C 1.38812 * 119.99371 * 29.01478 * 13 12 11 16 16 N 1.31622 * 120.00403 * 15.02344 * 15 13 12 17 17 Si 1.86802 * 119.99949 * 195.02527 * 15 13 12 18 18 H 1.48503 * 109.47167 * 359.97438 * 17 15 13 19 19 H 1.48497 * 109.47355 * 119.99755 * 17 15 13 20 20 H 1.48504 * 109.46934 * 240.00233 * 17 15 13 21 21 C 1.46933 * 118.74199 * 306.39862 * 12 11 10 22 22 H 1.09006 * 109.57878 * 293.81881 * 21 12 11 23 23 C 1.52995 * 109.58732 * 173.39647 * 21 12 11 24 24 C 1.53036 * 109.45933 * 205.06871 * 8 7 5 25 25 N 1.34401 * 108.45847 * 179.97438 * 4 3 2 26 26 N 1.28758 * 109.52395 * 0.02562 * 25 4 3 27 27 N 1.34813 * 126.57966 * 89.71805 * 3 2 1 28 28 C 1.46496 * 126.59738 * 0.02562 * 27 3 2 29 29 C 1.52996 * 109.47199 * 89.99905 * 28 27 3 30 30 H 1.09007 * 109.47172 * 300.00163 * 1 2 3 31 31 H 1.09001 * 109.47080 * 180.02562 * 1 2 3 32 32 H 1.08999 * 109.47466 * 60.00004 * 1 2 3 33 33 H 1.09001 * 109.47304 * 119.99483 * 2 1 3 34 34 H 1.08997 * 109.47237 * 239.99933 * 2 1 3 35 35 H 0.97000 * 119.99194 * 0.02562 * 7 5 4 36 36 H 1.09002 * 109.49903 * 178.60792 * 10 8 7 37 37 H 1.09000 * 109.49688 * 298.70158 * 10 8 7 38 38 H 1.08996 * 109.58861 * 174.42050 * 11 10 8 39 39 H 1.09004 * 109.58535 * 294.70605 * 11 10 8 40 40 H 0.97001 * 120.00261 * 180.02562 * 16 15 13 41 41 H 1.08992 * 109.47342 * 59.99923 * 23 21 12 42 42 H 1.09005 * 109.46900 * 179.97438 * 23 21 12 43 43 H 1.09001 * 109.46995 * 299.99053 * 23 21 12 44 44 H 1.09000 * 109.49934 * 61.29558 * 24 8 7 45 45 H 1.09005 * 109.49965 * 181.39426 * 24 8 7 46 46 H 1.09000 * 109.47723 * 210.00657 * 28 27 3 47 47 H 1.09012 * 109.46874 * 330.00437 * 28 27 3 48 48 H 1.09012 * 109.46773 * 60.00471 * 29 28 27 49 49 H 1.09003 * 109.47193 * 179.97438 * 29 28 27 50 50 H 1.08991 * 109.47470 * 300.00830 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.3032 2.1885 -1.0969 5 6 2.1544 1.7667 -2.5027 6 8 1.7596 0.6464 -2.7627 7 7 2.4561 2.6230 -3.4988 8 6 2.3088 2.2039 -4.8948 9 1 2.5614 1.1475 -4.9854 10 6 0.8619 2.4225 -5.3428 11 6 0.4996 3.9022 -5.1818 12 7 1.4856 4.7123 -5.9099 13 6 1.0822 5.6328 -6.8401 14 1 1.7255 5.8772 -7.6724 15 6 -0.1537 6.2519 -6.7130 16 7 -0.8067 6.1899 -5.5719 17 14 -0.8903 7.1730 -8.1617 18 1 0.0355 7.0951 -9.3202 19 1 -2.1931 6.5610 -8.5267 20 1 -1.0983 8.5955 -7.7897 21 6 2.9128 4.5164 -5.6208 22 1 3.1257 4.8339 -4.6000 23 6 3.7522 5.3373 -6.6019 24 6 3.2480 3.0298 -5.7768 25 7 2.7285 3.3930 -0.6789 26 7 2.7396 3.4225 0.6083 27 7 2.2950 2.1802 1.0826 28 6 2.1477 1.7825 2.4848 29 6 3.4566 1.1639 2.9797 30 1 -0.3634 0.5139 0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3634 0.5138 -0.8900 33 1 1.8934 -0.5137 0.8900 34 1 1.8934 -0.5138 -0.8899 35 1 2.7714 3.5165 -3.2913 36 1 0.7573 2.1340 -6.3887 37 1 0.1956 1.8160 -4.7293 38 1 -0.4945 4.0816 -5.5911 39 1 0.5133 4.1689 -4.1250 40 1 -1.6705 6.6222 -5.4833 41 1 3.5032 6.3933 -6.4980 42 1 4.8105 5.1909 -6.3854 43 1 3.5412 5.0126 -7.6208 44 1 4.2800 2.8557 -5.4723 45 1 3.1210 2.7357 -6.8188 46 1 1.9090 2.6586 3.0879 47 1 1.3441 1.0512 2.5726 48 1 4.2602 1.8952 2.8919 49 1 3.3471 0.8684 4.0232 50 1 3.6952 0.2879 2.3767 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000947719839.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:03:21 Heat of formation + Delta-G solvation = 68.213265 kcal Electronic energy + Delta-G solvation = -30462.434657 eV Core-core repulsion = 26527.064718 eV Total energy + Delta-G solvation = -3935.369939 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -42.29538 -39.47721 -37.51814 -35.95187 -34.34928 -33.83916 -32.27943 -31.37138 -30.62576 -29.99443 -29.18478 -26.33800 -25.21493 -24.81611 -24.04046 -23.25344 -21.93793 -20.94105 -20.45669 -20.27789 -18.51649 -17.90612 -16.44838 -16.20331 -16.12927 -15.39117 -15.09710 -14.91183 -14.74655 -14.47407 -14.11164 -13.92804 -13.87808 -13.62738 -13.31929 -13.03911 -12.88465 -12.71234 -12.62585 -12.43842 -12.36449 -12.02263 -11.77758 -11.56717 -11.42719 -11.33417 -11.12647 -10.95657 -10.94406 -10.62539 -10.56158 -10.32297 -10.28726 -10.07091 -9.99317 -9.69962 -9.60275 -9.22052 -9.13576 -8.49250 -8.39008 -6.55706 -5.70343 -3.14313 1.10946 1.85397 1.93391 3.40994 3.48670 3.49414 3.50494 3.59243 4.08923 4.11797 4.41684 4.48822 4.54366 4.66963 4.72760 4.91702 5.03502 5.05773 5.20706 5.29832 5.39716 5.42677 5.45479 5.48746 5.56028 5.64531 5.69234 5.74522 5.81369 5.96433 6.06773 6.07561 6.20657 6.32292 6.35634 6.38793 6.45316 6.52200 6.64822 6.69985 6.84738 7.03468 7.10504 7.14085 7.47191 7.78348 7.83061 7.88795 8.09619 8.53281 8.54687 9.29202 9.93062 10.49894 11.37560 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.016644 B = 0.003022 C = 0.002973 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1681.861760 B = 9263.351045 C = 9417.237105 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.063 4.063 3 C 0.123 3.877 4 C -0.098 4.098 5 C 0.603 3.397 6 O -0.547 6.547 7 N -0.695 5.695 8 C 0.155 3.845 9 H 0.074 0.926 10 C -0.153 4.153 11 C 0.175 3.825 12 N -0.587 5.587 13 C -0.247 4.247 14 H 0.070 0.930 15 C 0.001 3.999 16 N -0.902 5.902 17 Si 0.899 3.101 18 H -0.278 1.278 19 H -0.290 1.290 20 H -0.292 1.292 21 C 0.167 3.833 22 H 0.023 0.977 23 C -0.136 4.136 24 C -0.139 4.139 25 N -0.198 5.198 26 N -0.070 5.070 27 N -0.363 5.363 28 C 0.116 3.884 29 C -0.171 4.171 30 H 0.048 0.952 31 H 0.069 0.931 32 H 0.069 0.931 33 H 0.075 0.925 34 H 0.117 0.883 35 H 0.409 0.591 36 H 0.064 0.936 37 H 0.053 0.947 38 H 0.086 0.914 39 H 0.018 0.982 40 H 0.251 0.749 41 H 0.061 0.939 42 H 0.038 0.962 43 H 0.054 0.946 44 H 0.056 0.944 45 H 0.075 0.925 46 H 0.106 0.894 47 H 0.100 0.900 48 H 0.069 0.931 49 H 0.083 0.917 50 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.942 -13.711 15.528 21.847 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.102 4.102 3 C -0.015 4.015 4 C -0.237 4.237 5 C 0.387 3.613 6 O -0.425 6.425 7 N -0.346 5.346 8 C 0.051 3.949 9 H 0.092 0.908 10 C -0.193 4.193 11 C 0.049 3.951 12 N -0.310 5.310 13 C -0.377 4.377 14 H 0.088 0.912 15 C -0.197 4.197 16 N -0.547 5.547 17 Si 0.730 3.270 18 H -0.203 1.203 19 H -0.217 1.217 20 H -0.219 1.219 21 C 0.059 3.941 22 H 0.040 0.960 23 C -0.194 4.194 24 C -0.178 4.178 25 N -0.071 5.071 26 N -0.049 5.049 27 N -0.149 5.149 28 C -0.005 4.005 29 C -0.229 4.229 30 H 0.067 0.933 31 H 0.088 0.912 32 H 0.088 0.912 33 H 0.094 0.906 34 H 0.135 0.865 35 H 0.246 0.754 36 H 0.082 0.918 37 H 0.072 0.928 38 H 0.104 0.896 39 H 0.036 0.964 40 H 0.061 0.939 41 H 0.081 0.919 42 H 0.057 0.943 43 H 0.073 0.927 44 H 0.074 0.926 45 H 0.094 0.906 46 H 0.124 0.876 47 H 0.119 0.881 48 H 0.088 0.912 49 H 0.102 0.898 50 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 7.012 -12.980 15.774 21.597 hybrid contribution -0.726 0.151 -0.528 0.910 sum 6.286 -12.829 15.246 20.894 Atomic orbital electron populations 1.21677 0.93096 1.02730 1.02566 1.20465 0.97319 0.87327 1.05118 1.21912 0.97030 0.96183 0.86399 1.21334 1.14707 0.91988 0.95695 1.16696 0.77489 0.84682 0.82442 1.90715 1.48023 1.20128 1.83619 1.45966 1.65599 1.17093 1.05928 1.20937 0.96868 0.98111 0.78996 0.90776 1.22558 0.94757 1.01533 1.00455 1.20714 0.94921 0.84664 0.94784 1.44140 0.98752 1.42148 1.45978 1.19217 1.01746 1.15598 1.01159 0.91213 1.25084 0.99859 0.98500 0.96273 1.70038 1.15271 1.46788 1.22559 0.86270 0.79083 0.79275 0.82421 1.20319 1.21732 1.21881 1.20400 0.86638 0.91118 0.95894 0.95986 1.21798 0.96793 1.01221 0.99581 1.22363 0.97272 0.98462 0.99736 1.74657 1.10657 1.17798 1.03985 1.81987 1.20224 0.99131 1.03552 1.50468 1.45818 1.11285 1.07328 1.21959 0.99980 1.02098 0.76455 1.22192 0.96683 1.01784 1.02238 0.93268 0.91190 0.91188 0.90642 0.86481 0.75418 0.91772 0.92783 0.89588 0.96372 0.93860 0.91947 0.94321 0.92737 0.92574 0.90606 0.87572 0.88138 0.91193 0.89819 0.91685 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.34 9.89 37.16 0.37 -0.97 16 2 C -0.06 -0.61 5.43 -27.88 -0.15 -0.76 16 3 C 0.12 1.56 6.27 -81.87 -0.51 1.05 16 4 C -0.10 -1.58 6.99 -83.55 -0.58 -2.16 16 5 C 0.60 10.53 7.78 -12.47 -0.10 10.43 16 6 O -0.55 -9.92 14.38 5.28 0.08 -9.84 16 7 N -0.70 -12.39 4.26 -54.81 -0.23 -12.62 16 8 C 0.15 2.77 2.78 -67.89 -0.19 2.58 16 9 H 0.07 1.28 7.58 -51.93 -0.39 0.89 16 10 C -0.15 -3.08 5.77 -26.61 -0.15 -3.24 16 11 C 0.17 4.24 5.03 -3.71 -0.02 4.22 16 12 N -0.59 -14.37 2.99 -164.78 -0.49 -14.86 16 13 C -0.25 -6.64 8.60 -15.06 -0.13 -6.77 16 14 H 0.07 1.83 6.21 -52.49 -0.33 1.50 16 15 C 0.00 0.03 4.96 -17.43 -0.09 -0.05 16 16 N -0.90 -26.43 11.14 55.49 0.62 -25.81 16 17 Si 0.90 21.86 29.58 -169.99 -5.03 16.83 16 18 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 19 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 20 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 21 C 0.17 3.39 3.20 -67.60 -0.22 3.17 16 22 H 0.02 0.48 6.64 -51.93 -0.34 0.13 16 23 C -0.14 -2.55 7.94 37.16 0.30 -2.26 16 24 C -0.14 -2.39 5.07 -26.61 -0.13 -2.53 16 25 N -0.20 -3.40 12.04 32.84 0.40 -3.00 16 26 N -0.07 -1.07 13.78 60.35 0.83 -0.24 16 27 N -0.36 -4.21 3.63 -56.85 -0.21 -4.41 16 28 C 0.12 0.75 6.87 -4.05 -0.03 0.73 16 29 C -0.17 -0.88 10.24 37.16 0.38 -0.50 16 30 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 33 H 0.08 0.49 7.84 -51.93 -0.41 0.09 16 34 H 0.12 1.33 6.43 -51.93 -0.33 0.99 16 35 H 0.41 7.53 6.55 -40.82 -0.27 7.26 16 36 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 37 H 0.05 1.09 8.14 -51.93 -0.42 0.66 16 38 H 0.09 2.36 6.06 -51.93 -0.31 2.05 16 39 H 0.02 0.47 7.74 -51.93 -0.40 0.07 16 40 H 0.25 7.17 8.31 -40.82 -0.34 6.83 16 41 H 0.06 1.27 7.62 -51.93 -0.40 0.87 16 42 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 43 H 0.05 1.02 7.45 -51.93 -0.39 0.64 16 44 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 45 H 0.08 1.31 8.14 -51.93 -0.42 0.88 16 46 H 0.11 0.59 8.14 -51.93 -0.42 0.17 16 47 H 0.10 0.43 7.77 -51.92 -0.40 0.03 16 48 H 0.07 0.46 8.14 -51.92 -0.42 0.04 16 49 H 0.08 0.23 8.14 -51.93 -0.42 -0.19 16 50 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 LS Contribution 393.84 15.07 5.94 5.94 Total: -1.00 -32.39 393.84 -7.55 -39.94 By element: Atomic # 1 Polarization: 13.32 SS G_CDS: -8.18 Total: 5.14 kcal Atomic # 6 Polarization: 4.20 SS G_CDS: -1.26 Total: 2.94 kcal Atomic # 7 Polarization: -61.86 SS G_CDS: 0.91 Total: -60.95 kcal Atomic # 8 Polarization: -9.92 SS G_CDS: 0.08 Total: -9.84 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.03 Total: 16.83 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -32.39 -7.55 -39.94 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000947719839.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.155 kcal (2) G-P(sol) polarization free energy of solvation -32.395 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.760 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.547 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.941 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.213 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds