Wall clock time and date at job start Tue Mar 31 2020 20:03:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50708 * 109.46751 * 2 1 4 4 C 1.36591 * 126.57754 * 270.01952 * 3 2 1 5 5 C 1.47520 * 125.77297 * 359.96414 * 4 3 2 6 6 O 1.21597 * 119.99988 * 359.97438 * 5 4 3 7 7 N 1.34785 * 120.00424 * 179.97438 * 5 4 3 8 8 C 1.46497 * 120.00223 * 179.97438 * 7 5 4 9 9 H 1.09000 * 109.46041 * 325.02799 * 8 7 5 10 10 C 1.53041 * 109.45635 * 85.00290 * 8 7 5 11 11 C 1.53190 * 109.31734 * 58.65530 * 10 8 7 12 12 N 1.46923 * 108.77504 * 54.63061 * 11 10 8 13 13 C 1.36939 * 120.63432 * 126.41349 * 12 11 10 14 14 H 1.07995 * 120.00867 * 209.01303 * 13 12 11 15 15 C 1.38812 * 119.99371 * 29.01478 * 13 12 11 16 16 N 1.31622 * 120.00403 * 15.02344 * 15 13 12 17 17 Si 1.86802 * 119.99949 * 195.02527 * 15 13 12 18 18 H 1.48503 * 109.47167 * 359.97438 * 17 15 13 19 19 H 1.48497 * 109.47355 * 119.99755 * 17 15 13 20 20 H 1.48504 * 109.46934 * 240.00233 * 17 15 13 21 21 C 1.46933 * 118.74199 * 306.39862 * 12 11 10 22 22 H 1.09006 * 109.57878 * 293.81881 * 21 12 11 23 23 C 1.52995 * 109.58732 * 173.39647 * 21 12 11 24 24 C 1.53036 * 109.45933 * 205.06871 * 8 7 5 25 25 N 1.34401 * 108.45847 * 179.97438 * 4 3 2 26 26 N 1.28758 * 109.52395 * 0.02562 * 25 4 3 27 27 N 1.34813 * 126.57966 * 89.71805 * 3 2 1 28 28 C 1.46496 * 126.59738 * 0.02562 * 27 3 2 29 29 C 1.52996 * 109.47199 * 89.99905 * 28 27 3 30 30 H 1.09007 * 109.47172 * 300.00163 * 1 2 3 31 31 H 1.09001 * 109.47080 * 180.02562 * 1 2 3 32 32 H 1.08999 * 109.47466 * 60.00004 * 1 2 3 33 33 H 1.09001 * 109.47304 * 119.99483 * 2 1 3 34 34 H 1.08997 * 109.47237 * 239.99933 * 2 1 3 35 35 H 0.97000 * 119.99194 * 0.02562 * 7 5 4 36 36 H 1.09002 * 109.49903 * 178.60792 * 10 8 7 37 37 H 1.09000 * 109.49688 * 298.70158 * 10 8 7 38 38 H 1.08996 * 109.58861 * 174.42050 * 11 10 8 39 39 H 1.09004 * 109.58535 * 294.70605 * 11 10 8 40 40 H 0.97001 * 120.00261 * 180.02562 * 16 15 13 41 41 H 1.08992 * 109.47342 * 59.99923 * 23 21 12 42 42 H 1.09005 * 109.46900 * 179.97438 * 23 21 12 43 43 H 1.09001 * 109.46995 * 299.99053 * 23 21 12 44 44 H 1.09000 * 109.49934 * 61.29558 * 24 8 7 45 45 H 1.09005 * 109.49965 * 181.39426 * 24 8 7 46 46 H 1.09000 * 109.47723 * 210.00657 * 28 27 3 47 47 H 1.09012 * 109.46874 * 330.00437 * 28 27 3 48 48 H 1.09012 * 109.46773 * 60.00471 * 29 28 27 49 49 H 1.09003 * 109.47193 * 179.97438 * 29 28 27 50 50 H 1.08991 * 109.47470 * 300.00830 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.3032 2.1885 -1.0969 5 6 2.1544 1.7667 -2.5027 6 8 1.7596 0.6464 -2.7627 7 7 2.4561 2.6230 -3.4988 8 6 2.3088 2.2039 -4.8948 9 1 2.5614 1.1475 -4.9854 10 6 0.8619 2.4225 -5.3428 11 6 0.4996 3.9022 -5.1818 12 7 1.4856 4.7123 -5.9099 13 6 1.0822 5.6328 -6.8401 14 1 1.7255 5.8772 -7.6724 15 6 -0.1537 6.2519 -6.7130 16 7 -0.8067 6.1899 -5.5719 17 14 -0.8903 7.1730 -8.1617 18 1 0.0355 7.0951 -9.3202 19 1 -2.1931 6.5610 -8.5267 20 1 -1.0983 8.5955 -7.7897 21 6 2.9128 4.5164 -5.6208 22 1 3.1257 4.8339 -4.6000 23 6 3.7522 5.3373 -6.6019 24 6 3.2480 3.0298 -5.7768 25 7 2.7285 3.3930 -0.6789 26 7 2.7396 3.4225 0.6083 27 7 2.2950 2.1802 1.0826 28 6 2.1477 1.7825 2.4848 29 6 3.4566 1.1639 2.9797 30 1 -0.3634 0.5139 0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3634 0.5138 -0.8900 33 1 1.8934 -0.5137 0.8900 34 1 1.8934 -0.5138 -0.8899 35 1 2.7714 3.5165 -3.2913 36 1 0.7573 2.1340 -6.3887 37 1 0.1956 1.8160 -4.7293 38 1 -0.4945 4.0816 -5.5911 39 1 0.5133 4.1689 -4.1250 40 1 -1.6705 6.6222 -5.4833 41 1 3.5032 6.3933 -6.4980 42 1 4.8105 5.1909 -6.3854 43 1 3.5412 5.0126 -7.6208 44 1 4.2800 2.8557 -5.4723 45 1 3.1210 2.7357 -6.8188 46 1 1.9090 2.6586 3.0879 47 1 1.3441 1.0512 2.5726 48 1 4.2602 1.8952 2.8919 49 1 3.3471 0.8684 4.0232 50 1 3.6952 0.2879 2.3767 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000947719839.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:03:20 Heat of formation + Delta-G solvation = 46.884927 kcal Electronic energy + Delta-G solvation = -30463.359524 eV Core-core repulsion = 26527.064718 eV Total energy + Delta-G solvation = -3936.294805 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -43.36092 -40.92627 -39.09801 -36.81604 -35.89360 -34.76200 -34.07628 -32.91367 -31.70312 -31.31209 -30.51134 -27.98771 -26.84964 -25.87346 -25.03168 -24.26491 -23.67746 -22.33275 -21.85121 -21.31138 -20.15163 -19.05080 -18.22996 -17.29115 -17.11290 -17.08781 -16.67741 -16.01228 -15.77748 -15.69313 -15.55098 -15.45660 -15.14401 -14.80582 -14.72308 -14.38110 -14.10269 -13.90095 -13.75226 -13.39102 -13.31568 -13.18727 -13.12727 -12.86437 -12.69747 -12.65874 -12.45013 -12.32278 -12.30175 -12.23502 -12.12315 -11.94641 -11.82322 -11.69420 -11.39332 -11.20061 -11.03166 -10.96470 -10.50762 -10.29789 -9.91225 -8.58281 -7.80192 -5.26299 0.10434 0.61536 1.09154 1.46410 1.48395 1.58219 2.17552 2.30025 2.54166 3.14873 3.34662 3.38765 3.52719 3.63971 3.70810 3.95170 3.96372 4.11246 4.14931 4.22148 4.26961 4.27667 4.40525 4.46013 4.52947 4.61083 4.66144 4.69911 4.75563 4.81127 4.91568 4.93267 4.94457 4.99103 5.05179 5.13079 5.15276 5.17733 5.20380 5.30864 5.43302 5.52220 5.54330 5.56684 5.62103 5.74923 5.79588 6.45650 6.48201 6.90295 7.17825 7.20822 7.93449 8.45431 9.26058 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.016644 B = 0.003022 C = 0.002973 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1681.861760 B = 9263.351045 C = 9417.237105 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.059 4.059 3 C 0.136 3.864 4 C -0.130 4.130 5 C 0.602 3.398 6 O -0.557 6.557 7 N -0.700 5.700 8 C 0.160 3.840 9 H 0.090 0.910 10 C -0.139 4.139 11 C 0.189 3.811 12 N -0.601 5.601 13 C -0.244 4.244 14 H 0.079 0.921 15 C -0.058 4.058 16 N -0.939 5.939 17 Si 0.962 3.038 18 H -0.263 1.263 19 H -0.295 1.295 20 H -0.297 1.297 21 C 0.158 3.842 22 H 0.013 0.987 23 C -0.129 4.129 24 C -0.125 4.125 25 N -0.231 5.231 26 N -0.093 5.093 27 N -0.347 5.347 28 C 0.101 3.899 29 C -0.165 4.165 30 H 0.064 0.936 31 H 0.092 0.908 32 H 0.032 0.968 33 H 0.119 0.881 34 H 0.102 0.898 35 H 0.405 0.595 36 H 0.069 0.931 37 H 0.049 0.951 38 H 0.048 0.952 39 H -0.012 1.012 40 H 0.244 0.756 41 H 0.038 0.962 42 H 0.075 0.925 43 H 0.054 0.946 44 H 0.087 0.913 45 H 0.083 0.917 46 H 0.116 0.884 47 H 0.133 0.867 48 H 0.050 0.950 49 H 0.114 0.886 50 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.304 -15.858 16.488 24.337 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.098 4.098 3 C -0.004 4.004 4 C -0.270 4.270 5 C 0.387 3.613 6 O -0.436 6.436 7 N -0.350 5.350 8 C 0.056 3.944 9 H 0.108 0.892 10 C -0.180 4.180 11 C 0.063 3.937 12 N -0.325 5.325 13 C -0.374 4.374 14 H 0.096 0.904 15 C -0.252 4.252 16 N -0.586 5.586 17 Si 0.791 3.209 18 H -0.187 1.187 19 H -0.222 1.222 20 H -0.225 1.225 21 C 0.052 3.948 22 H 0.030 0.970 23 C -0.187 4.187 24 C -0.164 4.164 25 N -0.103 5.103 26 N -0.072 5.072 27 N -0.133 5.133 28 C -0.018 4.018 29 C -0.223 4.223 30 H 0.083 0.917 31 H 0.111 0.889 32 H 0.051 0.949 33 H 0.137 0.863 34 H 0.120 0.880 35 H 0.241 0.759 36 H 0.087 0.913 37 H 0.068 0.932 38 H 0.066 0.934 39 H 0.006 0.994 40 H 0.053 0.947 41 H 0.058 0.942 42 H 0.094 0.906 43 H 0.073 0.927 44 H 0.105 0.895 45 H 0.101 0.899 46 H 0.134 0.866 47 H 0.151 0.849 48 H 0.069 0.931 49 H 0.133 0.867 50 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 8.417 -15.134 16.752 24.094 hybrid contribution -1.126 0.766 -0.671 1.518 sum 7.291 -14.368 16.081 22.764 Atomic orbital electron populations 1.21667 0.92704 1.03907 1.01506 1.20595 0.97409 0.85320 1.06486 1.22342 0.95272 0.97072 0.85702 1.21378 1.16988 0.92774 0.95896 1.16910 0.76890 0.84454 0.83057 1.90693 1.48469 1.20419 1.84019 1.45981 1.65933 1.16986 1.06054 1.20886 0.95128 0.99113 0.79293 0.89239 1.22364 0.96698 0.98119 1.00771 1.20368 0.93462 0.87314 0.92580 1.44385 1.00606 1.41892 1.45624 1.19582 1.01560 1.14787 1.01518 0.90388 1.25829 1.00745 1.00204 0.98448 1.70216 1.15357 1.48506 1.24570 0.85278 0.78140 0.77453 0.80046 1.18664 1.22248 1.22498 1.20644 0.84456 0.93784 0.95876 0.96981 1.21730 0.98643 0.99302 0.99002 1.22234 0.98685 0.95443 1.00055 1.74617 1.11933 1.18806 1.04986 1.81861 1.21198 1.01175 1.02992 1.50832 1.43696 1.09813 1.08913 1.22572 1.01977 1.03574 0.73672 1.22187 0.95038 1.01020 1.04067 0.91661 0.88897 0.94908 0.86329 0.87995 0.75943 0.91271 0.93237 0.93371 0.99397 0.94675 0.94233 0.90648 0.92700 0.89470 0.89867 0.86588 0.84895 0.93092 0.86718 0.91581 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.35 9.89 71.98 0.71 -1.63 16 2 C -0.06 -1.01 5.43 29.85 0.16 -0.85 16 3 C 0.14 3.32 6.27 41.72 0.26 3.59 16 4 C -0.13 -4.26 6.99 40.81 0.29 -3.98 16 5 C 0.60 21.33 7.78 86.69 0.67 22.01 16 6 O -0.56 -20.22 14.38 -4.02 -0.06 -20.28 16 7 N -0.70 -25.25 4.26 -445.58 -1.90 -27.15 16 8 C 0.16 5.59 2.78 45.02 0.13 5.72 16 9 H 0.09 2.93 7.58 -2.39 -0.02 2.91 16 10 C -0.14 -5.70 5.77 30.67 0.18 -5.53 16 11 C 0.19 9.55 5.03 86.36 0.43 9.99 16 12 N -0.60 -29.99 2.99 -675.23 -2.02 -32.01 16 13 C -0.24 -13.25 8.60 84.03 0.72 -12.53 16 14 H 0.08 4.05 6.21 -2.91 -0.02 4.03 16 15 C -0.06 -3.29 4.96 84.86 0.42 -2.87 16 16 N -0.94 -57.56 11.14 21.65 0.24 -57.31 16 17 Si 0.96 45.95 29.58 68.60 2.03 47.97 16 18 H -0.26 -11.73 7.11 99.48 0.71 -11.02 16 19 H -0.30 -14.21 7.11 99.48 0.71 -13.50 16 20 H -0.30 -14.38 7.11 99.48 0.71 -13.67 16 21 C 0.16 6.36 3.20 44.97 0.14 6.50 16 22 H 0.01 0.54 6.64 -2.38 -0.02 0.52 16 23 C -0.13 -4.64 7.94 71.98 0.57 -4.07 16 24 C -0.12 -4.07 5.07 30.67 0.16 -3.91 16 25 N -0.23 -8.19 12.04 -50.00 -0.60 -8.79 16 26 N -0.09 -2.87 13.78 37.02 0.51 -2.36 16 27 N -0.35 -7.56 3.63 -333.77 -1.21 -8.78 16 28 C 0.10 1.01 6.87 86.38 0.59 1.60 16 29 C -0.17 -1.19 10.24 71.98 0.74 -0.46 16 30 H 0.06 0.87 8.14 -2.38 -0.02 0.85 16 31 H 0.09 1.14 8.14 -2.39 -0.02 1.12 16 32 H 0.03 0.79 8.14 -2.39 -0.02 0.77 16 33 H 0.12 1.02 7.84 -2.39 -0.02 1.00 16 34 H 0.10 2.15 6.43 -2.39 -0.02 2.14 16 35 H 0.40 15.37 6.55 -92.71 -0.61 14.76 16 36 H 0.07 2.74 8.14 -2.39 -0.02 2.72 16 37 H 0.05 2.04 8.14 -2.39 -0.02 2.02 16 38 H 0.05 2.79 6.06 -2.39 -0.01 2.77 16 39 H -0.01 -0.67 7.74 -2.38 -0.02 -0.69 16 40 H 0.24 14.63 8.31 -92.71 -0.77 13.86 16 41 H 0.04 1.57 7.62 -2.39 -0.02 1.56 16 42 H 0.07 2.14 8.14 -2.38 -0.02 2.12 16 43 H 0.05 1.95 7.45 -2.39 -0.02 1.93 16 44 H 0.09 2.36 8.14 -2.39 -0.02 2.34 16 45 H 0.08 2.64 8.14 -2.38 -0.02 2.62 16 46 H 0.12 0.99 8.14 -2.39 -0.02 0.97 16 47 H 0.13 0.53 7.77 -2.38 -0.02 0.51 16 48 H 0.05 0.58 8.14 -2.38 -0.02 0.57 16 49 H 0.11 0.16 8.14 -2.39 -0.02 0.14 16 50 H 0.07 0.49 8.14 -2.39 -0.02 0.47 16 Total: -1.00 -74.78 393.84 3.50 -71.28 By element: Atomic # 1 Polarization: 23.50 SS G_CDS: 0.34 Total: 23.84 kcal Atomic # 6 Polarization: 7.41 SS G_CDS: 6.18 Total: 13.58 kcal Atomic # 7 Polarization: -131.42 SS G_CDS: -4.98 Total: -136.40 kcal Atomic # 8 Polarization: -20.22 SS G_CDS: -0.06 Total: -20.28 kcal Atomic # 14 Polarization: 45.95 SS G_CDS: 2.03 Total: 47.97 kcal Total: -74.78 3.50 -71.28 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000947719839.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.168 kcal (2) G-P(sol) polarization free energy of solvation -74.785 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.383 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.502 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.283 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.885 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds