Wall clock time and date at job start Tue Mar 31 2020 20:03:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50698 * 109.47310 * 2 1 4 4 C 1.36603 * 126.57535 * 269.68418 * 3 2 1 5 5 C 1.47520 * 125.77308 * 359.97438 * 4 3 2 6 6 O 1.21596 * 120.00054 * 359.97438 * 5 4 3 7 7 N 1.34778 * 120.00241 * 180.02562 * 5 4 3 8 8 C 1.46491 * 120.00013 * 179.97438 * 7 5 4 9 9 H 1.09004 * 109.46370 * 325.02955 * 8 7 5 10 10 C 1.53039 * 109.46049 * 84.99806 * 8 7 5 11 11 C 1.53195 * 109.31242 * 181.38413 * 10 8 7 12 12 N 1.46924 * 108.77624 * 305.36134 * 11 10 8 13 13 C 1.36935 * 120.63332 * 233.63004 * 12 11 10 14 14 H 1.07995 * 119.99939 * 150.16186 * 13 12 11 15 15 C 1.38810 * 119.99997 * 330.15439 * 13 12 11 16 16 N 1.31619 * 120.00194 * 344.49985 * 15 13 12 17 17 Si 1.86799 * 120.00029 * 164.49358 * 15 13 12 18 18 H 1.48504 * 109.46925 * 90.00195 * 17 15 13 19 19 H 1.48496 * 109.47421 * 210.00216 * 17 15 13 20 20 H 1.48505 * 109.46961 * 330.00820 * 17 15 13 21 21 C 1.46925 * 118.73630 * 53.61430 * 12 11 10 22 22 H 1.09003 * 109.58843 * 66.17354 * 21 12 11 23 23 C 1.52990 * 109.58865 * 186.45835 * 21 12 11 24 24 C 1.53038 * 109.46155 * 205.06421 * 8 7 5 25 25 N 1.34402 * 108.45636 * 179.83162 * 4 3 2 26 26 N 1.28769 * 109.52283 * 0.44352 * 25 4 3 27 27 N 1.34809 * 126.58472 * 89.99574 * 3 2 1 28 28 C 1.46500 * 126.59383 * 0.02562 * 27 3 2 29 29 C 1.53001 * 109.47053 * 89.99914 * 28 27 3 30 30 H 1.09005 * 109.47308 * 300.00733 * 1 2 3 31 31 H 1.09004 * 109.47009 * 60.00114 * 1 2 3 32 32 H 1.09001 * 109.47193 * 180.02562 * 1 2 3 33 33 H 1.09007 * 109.46708 * 119.99457 * 2 1 3 34 34 H 1.08995 * 109.47245 * 239.99261 * 2 1 3 35 35 H 0.97004 * 119.99362 * 359.97438 * 7 5 4 36 36 H 1.09000 * 109.49958 * 301.33353 * 10 8 7 37 37 H 1.09003 * 109.50128 * 61.43635 * 10 8 7 38 38 H 1.08994 * 109.58839 * 65.15703 * 11 10 8 39 39 H 1.09007 * 109.58264 * 185.58011 * 11 10 8 40 40 H 0.97004 * 120.00193 * 179.97438 * 16 15 13 41 41 H 1.08995 * 109.47297 * 59.99598 * 23 21 12 42 42 H 1.08997 * 109.47595 * 179.97438 * 23 21 12 43 43 H 1.08999 * 109.47479 * 299.99643 * 23 21 12 44 44 H 1.08998 * 109.50077 * 298.56722 * 24 8 7 45 45 H 1.09007 * 109.49411 * 58.66568 * 24 8 7 46 46 H 1.08999 * 109.47110 * 209.99916 * 28 27 3 47 47 H 1.08998 * 109.47310 * 330.00117 * 28 27 3 48 48 H 1.09007 * 109.47422 * 60.00174 * 29 28 27 49 49 H 1.09003 * 109.46763 * 179.97438 * 29 28 27 50 50 H 1.08999 * 109.47164 * 299.99968 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.3094 2.1862 -1.0970 5 6 2.1681 1.7617 -2.5027 6 8 1.7744 0.6410 -2.7628 7 7 2.4764 2.6156 -3.4988 8 6 2.3366 2.1939 -4.8947 9 1 2.5885 1.1369 -4.9818 10 6 0.8924 2.4129 -5.3513 11 6 0.7417 1.9388 -6.8002 12 7 1.7462 2.6205 -7.6279 13 6 1.3737 3.3091 -8.7514 14 1 1.9494 4.1628 -9.0771 15 6 0.2563 2.9098 -9.4716 16 7 -0.2643 1.7176 -9.2714 17 14 -0.5088 4.0645 -10.7248 18 1 0.1190 3.8409 -12.0519 19 1 -1.9672 3.7999 -10.8162 20 1 -0.2863 5.4708 -10.3027 21 6 3.1579 2.5497 -7.2269 22 1 3.5107 1.5218 -7.3115 23 6 3.9944 3.4553 -8.1327 24 6 3.2815 3.0170 -5.7732 25 7 2.7295 3.3925 -0.6791 26 7 2.7400 3.4223 0.6082 27 7 2.3001 2.1783 1.0825 28 6 2.1592 1.7785 2.4848 29 6 3.4703 1.1589 2.9727 30 1 -0.3634 0.5140 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 1.8933 -0.5138 0.8901 34 1 1.8933 -0.5139 -0.8899 35 1 2.7908 3.5095 -3.2913 36 1 0.2181 1.8448 -4.7106 37 1 0.6477 3.4733 -5.2883 38 1 0.8974 0.8612 -6.8501 39 1 -0.2570 2.1829 -7.1626 40 1 -1.0454 1.4387 -9.7745 41 1 3.6434 4.4832 -8.0429 42 1 5.0411 3.4017 -7.8334 43 1 3.8948 3.1265 -9.1672 44 1 3.0144 4.0716 -5.7061 45 1 4.3077 2.8787 -5.4326 46 1 1.9235 2.6537 3.0902 47 1 1.3560 1.0472 2.5752 48 1 4.2736 1.8902 2.8824 49 1 3.3655 0.8618 4.0162 50 1 3.7060 0.2837 2.3673 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000947719841.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:03:30 Heat of formation + Delta-G solvation = 64.589844 kcal Electronic energy + Delta-G solvation = -29781.479930 eV Core-core repulsion = 25845.952868 eV Total energy + Delta-G solvation = -3935.527063 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -42.44982 -39.42132 -37.54485 -36.08786 -34.61733 -33.97362 -32.36342 -31.44639 -30.77065 -30.10665 -29.15691 -26.34142 -25.35976 -24.72607 -24.07564 -23.29234 -21.92881 -21.07328 -20.50723 -19.96581 -19.24336 -17.90455 -16.52987 -16.29841 -16.15948 -15.71749 -15.13484 -14.94945 -14.88321 -14.47664 -14.20804 -13.96029 -13.85403 -13.59453 -13.35814 -13.19903 -12.99035 -12.77625 -12.72678 -12.58433 -12.56113 -12.13227 -11.69146 -11.54329 -11.53645 -11.15262 -11.10595 -11.03680 -10.87547 -10.83041 -10.59656 -10.43509 -10.27076 -10.09282 -9.98478 -9.86789 -9.67153 -9.33113 -9.27943 -8.60910 -8.36181 -6.57597 -5.72341 -3.15998 0.96321 1.68493 1.78527 3.36039 3.41400 3.42840 3.48203 3.50140 3.96030 3.99802 4.30986 4.36150 4.53828 4.55402 4.60938 4.79395 4.94571 4.96513 5.10160 5.20557 5.32877 5.34922 5.45261 5.46983 5.47655 5.57421 5.66352 5.67771 5.84973 5.87192 5.97695 6.06602 6.21473 6.22897 6.33520 6.38569 6.49265 6.50930 6.59629 6.71945 6.85529 6.96767 7.09244 7.16517 7.44310 7.66552 7.74401 7.87889 7.92890 8.42132 8.52744 9.27903 9.91615 10.49177 11.36450 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.022208 B = 0.002507 C = 0.002394 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1260.504012 B =11166.066582 C =11693.873122 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.066 4.066 3 C 0.126 3.874 4 C -0.100 4.100 5 C 0.601 3.399 6 O -0.536 6.536 7 N -0.708 5.708 8 C 0.152 3.848 9 H 0.083 0.917 10 C -0.147 4.147 11 C 0.176 3.824 12 N -0.588 5.588 13 C -0.249 4.249 14 H 0.069 0.931 15 C 0.002 3.998 16 N -0.902 5.902 17 Si 0.899 3.101 18 H -0.288 1.288 19 H -0.291 1.291 20 H -0.280 1.280 21 C 0.172 3.828 22 H 0.027 0.973 23 C -0.135 4.135 24 C -0.135 4.135 25 N -0.204 5.204 26 N -0.072 5.072 27 N -0.362 5.362 28 C 0.116 3.884 29 C -0.171 4.171 30 H 0.048 0.952 31 H 0.068 0.932 32 H 0.071 0.929 33 H 0.076 0.924 34 H 0.119 0.881 35 H 0.402 0.598 36 H 0.053 0.947 37 H 0.055 0.945 38 H 0.021 0.979 39 H 0.088 0.912 40 H 0.253 0.747 41 H 0.053 0.947 42 H 0.038 0.962 43 H 0.062 0.938 44 H 0.064 0.936 45 H 0.055 0.945 46 H 0.106 0.894 47 H 0.101 0.899 48 H 0.069 0.931 49 H 0.084 0.916 50 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.477 -2.613 24.854 25.585 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.105 4.105 3 C -0.012 4.012 4 C -0.240 4.240 5 C 0.384 3.616 6 O -0.413 6.413 7 N -0.356 5.356 8 C 0.049 3.951 9 H 0.101 0.899 10 C -0.187 4.187 11 C 0.050 3.950 12 N -0.311 5.311 13 C -0.379 4.379 14 H 0.087 0.913 15 C -0.196 4.196 16 N -0.547 5.547 17 Si 0.729 3.271 18 H -0.215 1.215 19 H -0.217 1.217 20 H -0.205 1.205 21 C 0.064 3.936 22 H 0.044 0.956 23 C -0.193 4.193 24 C -0.175 4.175 25 N -0.077 5.077 26 N -0.051 5.051 27 N -0.148 5.148 28 C -0.005 4.005 29 C -0.230 4.230 30 H 0.067 0.933 31 H 0.087 0.913 32 H 0.090 0.910 33 H 0.095 0.905 34 H 0.137 0.863 35 H 0.237 0.763 36 H 0.072 0.928 37 H 0.074 0.926 38 H 0.039 0.961 39 H 0.106 0.894 40 H 0.063 0.937 41 H 0.072 0.928 42 H 0.057 0.943 43 H 0.081 0.919 44 H 0.083 0.917 45 H 0.074 0.926 46 H 0.124 0.876 47 H 0.120 0.880 48 H 0.088 0.912 49 H 0.103 0.897 50 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 5.549 -2.069 24.979 25.672 hybrid contribution -0.660 0.146 -0.485 0.832 sum 4.890 -1.923 24.494 25.051 Atomic orbital electron populations 1.21673 0.93010 1.02955 1.02386 1.20502 0.97388 0.87231 1.05367 1.21964 0.96652 0.96257 0.86333 1.21389 1.14717 0.92072 0.95773 1.16730 0.77701 0.84832 0.82330 1.90767 1.47277 1.19800 1.83447 1.46129 1.66212 1.16795 1.06501 1.21087 0.96924 0.99576 0.77514 0.89869 1.22582 0.94444 1.01167 1.00512 1.20728 0.95393 0.93999 0.84890 1.44163 0.99330 1.61139 1.26466 1.19145 1.10587 1.06478 1.01680 0.91329 1.25100 1.00969 0.95635 0.97938 1.70024 1.24260 1.17038 1.43353 0.86352 0.78550 0.80703 0.81481 1.21473 1.21676 1.20545 1.20354 0.86899 0.96202 0.90109 0.95553 1.21788 0.96820 1.00038 1.00648 1.22388 0.97362 1.00021 0.97682 1.74603 1.10914 1.18064 1.04112 1.81958 1.20425 0.99197 1.03474 1.50464 1.45648 1.11250 1.07429 1.21983 1.00137 1.02088 0.76304 1.22199 0.96547 1.01827 1.02389 0.93315 0.91266 0.91001 0.90507 0.86301 0.76322 0.92845 0.92622 0.96127 0.89424 0.93717 0.92782 0.94310 0.91860 0.91697 0.92617 0.87568 0.88038 0.91201 0.89719 0.91598 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.21 9.89 37.16 0.37 -0.84 16 2 C -0.07 -0.59 5.44 -27.88 -0.15 -0.74 16 3 C 0.13 1.43 6.27 -81.88 -0.51 0.92 16 4 C -0.10 -1.42 6.99 -83.55 -0.58 -2.01 16 5 C 0.60 9.68 7.78 -12.48 -0.10 9.58 16 6 O -0.54 -9.61 14.37 5.28 0.08 -9.53 16 7 N -0.71 -11.23 5.07 -54.82 -0.28 -11.50 16 8 C 0.15 2.74 2.42 -67.90 -0.16 2.57 16 9 H 0.08 1.63 7.57 -51.93 -0.39 1.24 16 10 C -0.15 -2.98 5.65 -26.61 -0.15 -3.13 16 11 C 0.18 4.28 5.28 -3.71 -0.02 4.26 16 12 N -0.59 -14.52 2.99 -164.78 -0.49 -15.01 16 13 C -0.25 -6.69 8.57 -15.06 -0.13 -6.82 16 14 H 0.07 1.79 6.24 -52.49 -0.33 1.47 16 15 C 0.00 0.06 4.94 -17.43 -0.09 -0.03 16 16 N -0.90 -26.30 11.23 55.49 0.62 -25.68 16 17 Si 0.90 21.75 29.58 -169.99 -5.03 16.72 16 18 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 19 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 20 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 21 C 0.17 3.55 3.49 -67.60 -0.24 3.32 16 22 H 0.03 0.58 8.14 -51.93 -0.42 0.15 16 23 C -0.14 -2.54 7.96 37.15 0.30 -2.24 16 24 C -0.13 -2.35 4.85 -26.61 -0.13 -2.48 16 25 N -0.20 -2.97 12.04 32.85 0.40 -2.58 16 26 N -0.07 -0.94 13.78 60.35 0.83 -0.11 16 27 N -0.36 -3.62 3.63 -56.85 -0.21 -3.82 16 28 C 0.12 0.60 6.87 -4.04 -0.03 0.57 16 29 C -0.17 -0.71 10.24 37.16 0.38 -0.33 16 30 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 31 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 32 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 33 H 0.08 0.45 7.82 -51.93 -0.41 0.04 16 34 H 0.12 1.30 6.41 -51.93 -0.33 0.97 16 35 H 0.40 5.83 8.29 -40.82 -0.34 5.49 16 36 H 0.05 1.08 8.14 -51.93 -0.42 0.66 16 37 H 0.05 1.14 8.14 -51.93 -0.42 0.72 16 38 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 39 H 0.09 2.38 6.15 -51.92 -0.32 2.06 16 40 H 0.25 7.15 8.31 -40.82 -0.34 6.81 16 41 H 0.05 1.02 7.43 -51.93 -0.39 0.63 16 42 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 43 H 0.06 1.28 7.63 -51.93 -0.40 0.88 16 44 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 45 H 0.06 0.86 8.14 -51.92 -0.42 0.43 16 46 H 0.11 0.43 8.14 -51.93 -0.42 0.01 16 47 H 0.10 0.31 7.76 -51.93 -0.40 -0.09 16 48 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 49 H 0.08 0.16 8.14 -51.93 -0.42 -0.26 16 50 H 0.06 0.31 8.14 -51.93 -0.42 -0.12 16 LS Contribution 398.26 15.07 6.00 6.00 Total: -1.00 -32.30 398.26 -7.68 -39.97 By element: Atomic # 1 Polarization: 11.27 SS G_CDS: -8.36 Total: 2.91 kcal Atomic # 6 Polarization: 3.86 SS G_CDS: -1.24 Total: 2.62 kcal Atomic # 7 Polarization: -59.57 SS G_CDS: 0.87 Total: -58.69 kcal Atomic # 8 Polarization: -9.61 SS G_CDS: 0.08 Total: -9.53 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.03 Total: 16.72 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -32.30 -7.68 -39.97 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000947719841.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.563 kcal (2) G-P(sol) polarization free energy of solvation -32.295 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.268 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.678 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.973 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.590 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds