Wall clock time and date at job start Tue Mar 31 2020 20:03:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50698 * 109.47310 * 2 1 4 4 C 1.36603 * 126.57535 * 269.68418 * 3 2 1 5 5 C 1.47520 * 125.77308 * 359.97438 * 4 3 2 6 6 O 1.21596 * 120.00054 * 359.97438 * 5 4 3 7 7 N 1.34778 * 120.00241 * 180.02562 * 5 4 3 8 8 C 1.46491 * 120.00013 * 179.97438 * 7 5 4 9 9 H 1.09004 * 109.46370 * 325.02955 * 8 7 5 10 10 C 1.53039 * 109.46049 * 84.99806 * 8 7 5 11 11 C 1.53195 * 109.31242 * 181.38413 * 10 8 7 12 12 N 1.46924 * 108.77624 * 305.36134 * 11 10 8 13 13 C 1.36935 * 120.63332 * 233.63004 * 12 11 10 14 14 H 1.07995 * 119.99939 * 150.16186 * 13 12 11 15 15 C 1.38810 * 119.99997 * 330.15439 * 13 12 11 16 16 N 1.31619 * 120.00194 * 344.49985 * 15 13 12 17 17 Si 1.86799 * 120.00029 * 164.49358 * 15 13 12 18 18 H 1.48504 * 109.46925 * 90.00195 * 17 15 13 19 19 H 1.48496 * 109.47421 * 210.00216 * 17 15 13 20 20 H 1.48505 * 109.46961 * 330.00820 * 17 15 13 21 21 C 1.46925 * 118.73630 * 53.61430 * 12 11 10 22 22 H 1.09003 * 109.58843 * 66.17354 * 21 12 11 23 23 C 1.52990 * 109.58865 * 186.45835 * 21 12 11 24 24 C 1.53038 * 109.46155 * 205.06421 * 8 7 5 25 25 N 1.34402 * 108.45636 * 179.83162 * 4 3 2 26 26 N 1.28769 * 109.52283 * 0.44352 * 25 4 3 27 27 N 1.34809 * 126.58472 * 89.99574 * 3 2 1 28 28 C 1.46500 * 126.59383 * 0.02562 * 27 3 2 29 29 C 1.53001 * 109.47053 * 89.99914 * 28 27 3 30 30 H 1.09005 * 109.47308 * 300.00733 * 1 2 3 31 31 H 1.09004 * 109.47009 * 60.00114 * 1 2 3 32 32 H 1.09001 * 109.47193 * 180.02562 * 1 2 3 33 33 H 1.09007 * 109.46708 * 119.99457 * 2 1 3 34 34 H 1.08995 * 109.47245 * 239.99261 * 2 1 3 35 35 H 0.97004 * 119.99362 * 359.97438 * 7 5 4 36 36 H 1.09000 * 109.49958 * 301.33353 * 10 8 7 37 37 H 1.09003 * 109.50128 * 61.43635 * 10 8 7 38 38 H 1.08994 * 109.58839 * 65.15703 * 11 10 8 39 39 H 1.09007 * 109.58264 * 185.58011 * 11 10 8 40 40 H 0.97004 * 120.00193 * 179.97438 * 16 15 13 41 41 H 1.08995 * 109.47297 * 59.99598 * 23 21 12 42 42 H 1.08997 * 109.47595 * 179.97438 * 23 21 12 43 43 H 1.08999 * 109.47479 * 299.99643 * 23 21 12 44 44 H 1.08998 * 109.50077 * 298.56722 * 24 8 7 45 45 H 1.09007 * 109.49411 * 58.66568 * 24 8 7 46 46 H 1.08999 * 109.47110 * 209.99916 * 28 27 3 47 47 H 1.08998 * 109.47310 * 330.00117 * 28 27 3 48 48 H 1.09007 * 109.47422 * 60.00174 * 29 28 27 49 49 H 1.09003 * 109.46763 * 179.97438 * 29 28 27 50 50 H 1.08999 * 109.47164 * 299.99968 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.3094 2.1862 -1.0970 5 6 2.1681 1.7617 -2.5027 6 8 1.7744 0.6410 -2.7628 7 7 2.4764 2.6156 -3.4988 8 6 2.3366 2.1939 -4.8947 9 1 2.5885 1.1369 -4.9818 10 6 0.8924 2.4129 -5.3513 11 6 0.7417 1.9388 -6.8002 12 7 1.7462 2.6205 -7.6279 13 6 1.3737 3.3091 -8.7514 14 1 1.9494 4.1628 -9.0771 15 6 0.2563 2.9098 -9.4716 16 7 -0.2643 1.7176 -9.2714 17 14 -0.5088 4.0645 -10.7248 18 1 0.1190 3.8409 -12.0519 19 1 -1.9672 3.7999 -10.8162 20 1 -0.2863 5.4708 -10.3027 21 6 3.1579 2.5497 -7.2269 22 1 3.5107 1.5218 -7.3115 23 6 3.9944 3.4553 -8.1327 24 6 3.2815 3.0170 -5.7732 25 7 2.7295 3.3925 -0.6791 26 7 2.7400 3.4223 0.6082 27 7 2.3001 2.1783 1.0825 28 6 2.1592 1.7785 2.4848 29 6 3.4703 1.1589 2.9727 30 1 -0.3634 0.5140 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 1.8933 -0.5138 0.8901 34 1 1.8933 -0.5139 -0.8899 35 1 2.7908 3.5095 -3.2913 36 1 0.2181 1.8448 -4.7106 37 1 0.6477 3.4733 -5.2883 38 1 0.8974 0.8612 -6.8501 39 1 -0.2570 2.1829 -7.1626 40 1 -1.0454 1.4387 -9.7745 41 1 3.6434 4.4832 -8.0429 42 1 5.0411 3.4017 -7.8334 43 1 3.8948 3.1265 -9.1672 44 1 3.0144 4.0716 -5.7061 45 1 4.3077 2.8787 -5.4326 46 1 1.9235 2.6537 3.0902 47 1 1.3560 1.0472 2.5752 48 1 4.2736 1.8902 2.8824 49 1 3.3655 0.8618 4.0162 50 1 3.7060 0.2837 2.3673 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000947719841.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:03:29 Heat of formation + Delta-G solvation = 43.125363 kcal Electronic energy + Delta-G solvation = -29782.410700 eV Core-core repulsion = 25845.952868 eV Total energy + Delta-G solvation = -3936.457832 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 1.39 seconds Orbital eigenvalues (eV) -43.37761 -40.79962 -39.16608 -36.83824 -36.08675 -34.77746 -34.19803 -33.01737 -31.69971 -31.30657 -30.52264 -27.97617 -26.78951 -25.81209 -25.00832 -24.28980 -23.58101 -22.41727 -21.42369 -21.33079 -20.87333 -19.02036 -18.20341 -17.38095 -17.22494 -16.99647 -16.84429 -15.86518 -15.77238 -15.71053 -15.62822 -15.39014 -15.06086 -14.84723 -14.77201 -14.53424 -14.30206 -13.90841 -13.77445 -13.38844 -13.32274 -13.15343 -12.93345 -12.72460 -12.69600 -12.69184 -12.59940 -12.36106 -12.30720 -12.24077 -12.09522 -11.89185 -11.80072 -11.69880 -11.48645 -11.33820 -11.20517 -10.94748 -10.52998 -10.31640 -9.93562 -8.61244 -7.81804 -5.27923 0.08314 0.59015 1.05946 1.47934 1.49781 1.58773 2.11913 2.22697 2.54389 3.11428 3.33494 3.37713 3.51014 3.61759 3.69821 3.88424 3.95086 4.08241 4.13787 4.25891 4.27717 4.28655 4.38699 4.41011 4.51551 4.61739 4.62962 4.73836 4.74786 4.78059 4.83666 4.91553 4.93103 4.96941 5.08492 5.09070 5.15863 5.17858 5.18595 5.29336 5.41313 5.47605 5.51237 5.56980 5.57476 5.73541 5.75506 6.45539 6.46483 6.88880 7.16891 7.19781 7.91309 8.44624 9.25744 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.022208 B = 0.002507 C = 0.002394 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1260.504012 B =11166.066582 C =11693.873122 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.063 4.063 3 C 0.136 3.864 4 C -0.127 4.127 5 C 0.600 3.400 6 O -0.559 6.559 7 N -0.702 5.702 8 C 0.164 3.836 9 H 0.067 0.933 10 C -0.130 4.130 11 C 0.186 3.814 12 N -0.603 5.603 13 C -0.248 4.248 14 H 0.078 0.922 15 C -0.056 4.056 16 N -0.939 5.939 17 Si 0.962 3.038 18 H -0.285 1.285 19 H -0.298 1.298 20 H -0.269 1.269 21 C 0.161 3.839 22 H 0.016 0.984 23 C -0.127 4.127 24 C -0.120 4.120 25 N -0.223 5.223 26 N -0.088 5.088 27 N -0.346 5.346 28 C 0.102 3.898 29 C -0.167 4.167 30 H 0.069 0.931 31 H 0.034 0.966 32 H 0.087 0.913 33 H 0.117 0.883 34 H 0.097 0.903 35 H 0.411 0.589 36 H 0.049 0.951 37 H 0.055 0.945 38 H -0.007 1.007 39 H 0.054 0.946 40 H 0.247 0.753 41 H 0.053 0.947 42 H 0.076 0.924 43 H 0.041 0.959 44 H 0.070 0.930 45 H 0.087 0.913 46 H 0.120 0.880 47 H 0.132 0.868 48 H 0.051 0.949 49 H 0.113 0.887 50 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.591 -1.983 27.638 28.482 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.102 4.102 3 C -0.003 4.003 4 C -0.267 4.267 5 C 0.385 3.615 6 O -0.438 6.438 7 N -0.351 5.351 8 C 0.060 3.940 9 H 0.085 0.915 10 C -0.170 4.170 11 C 0.059 3.941 12 N -0.327 5.327 13 C -0.378 4.378 14 H 0.095 0.905 15 C -0.251 4.251 16 N -0.586 5.586 17 Si 0.791 3.209 18 H -0.212 1.212 19 H -0.224 1.224 20 H -0.194 1.194 21 C 0.055 3.945 22 H 0.033 0.967 23 C -0.184 4.184 24 C -0.159 4.159 25 N -0.096 5.096 26 N -0.067 5.067 27 N -0.132 5.132 28 C -0.017 4.017 29 C -0.225 4.225 30 H 0.088 0.912 31 H 0.053 0.947 32 H 0.106 0.894 33 H 0.135 0.865 34 H 0.115 0.885 35 H 0.248 0.752 36 H 0.067 0.933 37 H 0.074 0.926 38 H 0.011 0.989 39 H 0.072 0.928 40 H 0.056 0.944 41 H 0.072 0.928 42 H 0.095 0.905 43 H 0.061 0.939 44 H 0.089 0.911 45 H 0.105 0.895 46 H 0.138 0.862 47 H 0.150 0.850 48 H 0.071 0.929 49 H 0.132 0.868 50 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 6.705 -1.400 27.815 28.645 hybrid contribution -0.969 -0.127 -1.203 1.550 sum 5.736 -1.527 26.611 27.265 Atomic orbital electron populations 1.21658 0.92543 1.03834 1.01689 1.20584 0.97607 0.85744 1.06266 1.22267 0.95206 0.96915 0.85931 1.21228 1.17110 0.93056 0.95337 1.16994 0.76872 0.84406 0.83195 1.90756 1.48212 1.20765 1.84033 1.45907 1.66448 1.17303 1.05454 1.20738 0.95292 0.98933 0.79024 0.91509 1.22322 0.96399 1.00652 0.97660 1.20432 0.93929 0.92508 0.87227 1.44418 1.01182 1.60900 1.26205 1.19507 1.10224 1.06462 1.01639 0.90485 1.25860 1.01959 0.96968 1.00292 1.70191 1.24695 1.18866 1.44820 0.85347 0.77044 0.79250 0.79258 1.21193 1.22417 1.19409 1.20617 0.84855 0.96397 0.92626 0.96662 1.21706 0.98668 0.99127 0.98937 1.22204 0.98897 0.99797 0.95046 1.74564 1.11701 1.18455 1.04903 1.81854 1.20984 1.00878 1.02973 1.50800 1.43689 1.09896 1.08829 1.22565 1.01798 1.03648 0.73687 1.22197 0.95222 1.01013 1.04073 0.91240 0.94678 0.89383 0.86497 0.88479 0.75249 0.93278 0.92600 0.98893 0.92765 0.94404 0.92828 0.90536 0.93938 0.91105 0.89482 0.86202 0.85031 0.92932 0.86804 0.91876 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.11 9.89 71.98 0.71 -1.39 16 2 C -0.06 -0.99 5.44 29.85 0.16 -0.83 16 3 C 0.14 2.89 6.27 41.72 0.26 3.15 16 4 C -0.13 -3.57 6.99 40.82 0.29 -3.28 16 5 C 0.60 19.43 7.78 86.69 0.67 20.11 16 6 O -0.56 -20.46 14.37 -4.02 -0.06 -20.52 16 7 N -0.70 -21.99 5.07 -445.60 -2.26 -24.26 16 8 C 0.16 5.92 2.42 45.02 0.11 6.02 16 9 H 0.07 2.66 7.57 -2.38 -0.02 2.64 16 10 C -0.13 -5.42 5.65 30.67 0.17 -5.25 16 11 C 0.19 9.45 5.28 86.36 0.46 9.91 16 12 N -0.60 -30.39 2.99 -675.25 -2.02 -32.40 16 13 C -0.25 -13.47 8.57 84.03 0.72 -12.75 16 14 H 0.08 3.99 6.24 -2.91 -0.02 3.98 16 15 C -0.06 -3.17 4.94 84.86 0.42 -2.75 16 16 N -0.94 -56.97 11.23 21.65 0.24 -56.73 16 17 Si 0.96 45.55 29.58 68.60 2.03 47.58 16 18 H -0.29 -13.26 7.11 99.48 0.71 -12.55 16 19 H -0.30 -14.29 7.11 99.48 0.71 -13.58 16 20 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 21 C 0.16 6.60 3.49 44.97 0.16 6.75 16 22 H 0.02 0.68 8.14 -2.39 -0.02 0.66 16 23 C -0.13 -4.55 7.96 71.98 0.57 -3.98 16 24 C -0.12 -4.00 4.85 30.67 0.15 -3.85 16 25 N -0.22 -6.37 12.04 -49.99 -0.60 -6.97 16 26 N -0.09 -2.19 13.78 37.02 0.51 -1.68 16 27 N -0.35 -6.15 3.63 -333.78 -1.21 -7.36 16 28 C 0.10 0.69 6.87 86.38 0.59 1.29 16 29 C -0.17 -0.84 10.24 71.98 0.74 -0.10 16 30 H 0.07 0.75 8.14 -2.38 -0.02 0.73 16 31 H 0.03 0.77 8.14 -2.39 -0.02 0.75 16 32 H 0.09 1.05 8.14 -2.39 -0.02 1.03 16 33 H 0.12 0.91 7.82 -2.38 -0.02 0.89 16 34 H 0.10 2.06 6.41 -2.39 -0.02 2.04 16 35 H 0.41 11.53 8.29 -92.71 -0.77 10.76 16 36 H 0.05 2.06 8.14 -2.39 -0.02 2.04 16 37 H 0.06 2.31 8.14 -2.39 -0.02 2.29 16 38 H -0.01 -0.39 8.14 -2.39 -0.02 -0.41 16 39 H 0.05 3.11 6.15 -2.38 -0.01 3.09 16 40 H 0.25 14.59 8.31 -92.71 -0.77 13.82 16 41 H 0.05 1.91 7.43 -2.39 -0.02 1.90 16 42 H 0.08 2.16 8.14 -2.39 -0.02 2.14 16 43 H 0.04 1.68 7.63 -2.39 -0.02 1.66 16 44 H 0.07 2.32 8.14 -2.39 -0.02 2.30 16 45 H 0.09 2.41 8.14 -2.38 -0.02 2.39 16 46 H 0.12 0.56 8.14 -2.39 -0.02 0.54 16 47 H 0.13 0.17 7.76 -2.39 -0.02 0.15 16 48 H 0.05 0.47 8.14 -2.38 -0.02 0.45 16 49 H 0.11 -0.05 8.14 -2.39 -0.02 -0.07 16 50 H 0.06 0.38 8.14 -2.39 -0.02 0.36 16 Total: -1.00 -73.72 398.26 2.99 -70.73 By element: Atomic # 1 Polarization: 18.41 SS G_CDS: 0.17 Total: 18.58 kcal Atomic # 6 Polarization: 6.85 SS G_CDS: 6.18 Total: 13.03 kcal Atomic # 7 Polarization: -124.06 SS G_CDS: -5.34 Total: -129.40 kcal Atomic # 8 Polarization: -20.46 SS G_CDS: -0.06 Total: -20.52 kcal Atomic # 14 Polarization: 45.55 SS G_CDS: 2.03 Total: 47.58 kcal Total: -73.72 2.99 -70.73 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000947719841.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.857 kcal (2) G-P(sol) polarization free energy of solvation -73.719 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.139 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.987 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.732 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.125 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.39 seconds