Wall clock time and date at job start Tue Mar 31 2020 20:03:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50700 * 109.47342 * 2 1 4 4 C 1.36596 * 126.58154 * 269.99940 * 3 2 1 5 5 C 1.47521 * 125.76991 * 359.97438 * 4 3 2 6 6 O 1.21597 * 120.00324 * 0.03890 * 5 4 3 7 7 N 1.34780 * 120.00138 * 180.02562 * 5 4 3 8 8 C 1.46501 * 120.00103 * 179.97438 * 7 5 4 9 9 H 1.09000 * 109.45876 * 34.97325 * 8 7 5 10 10 C 1.53031 * 109.46070 * 274.99758 * 8 7 5 11 11 C 1.53189 * 109.31323 * 178.61470 * 10 8 7 12 12 N 1.46929 * 108.77672 * 54.63439 * 11 10 8 13 13 C 1.36934 * 120.62853 * 126.36721 * 12 11 10 14 14 H 1.08001 * 120.00085 * 209.02779 * 13 12 11 15 15 C 1.38814 * 120.00442 * 29.03222 * 13 12 11 16 16 N 1.31620 * 119.99238 * 15.02344 * 15 13 12 17 17 Si 1.86793 * 120.00502 * 195.02450 * 15 13 12 18 18 H 1.48506 * 109.47023 * 359.97438 * 17 15 13 19 19 H 1.48504 * 109.47250 * 119.99772 * 17 15 13 20 20 H 1.48495 * 109.47309 * 239.99952 * 17 15 13 21 21 C 1.46923 * 118.73922 * 306.39724 * 12 11 10 22 22 H 1.08994 * 109.58588 * 293.81944 * 21 12 11 23 23 C 1.53005 * 109.58739 * 173.53228 * 21 12 11 24 24 C 1.53047 * 109.45678 * 154.93240 * 8 7 5 25 25 N 1.34398 * 108.45834 * 179.97438 * 4 3 2 26 26 N 1.28764 * 109.52380 * 0.02562 * 25 4 3 27 27 N 1.34816 * 126.57983 * 90.00081 * 3 2 1 28 28 C 1.46504 * 126.59054 * 359.97438 * 27 3 2 29 29 C 1.53000 * 109.46717 * 269.99810 * 28 27 3 30 30 H 1.08999 * 109.47057 * 300.00104 * 1 2 3 31 31 H 1.08996 * 109.47014 * 59.99803 * 1 2 3 32 32 H 1.09001 * 109.47411 * 179.97438 * 1 2 3 33 33 H 1.09007 * 109.46962 * 240.00212 * 2 1 3 34 34 H 1.09001 * 109.47406 * 120.00405 * 2 1 3 35 35 H 0.97003 * 119.99577 * 359.97438 * 7 5 4 36 36 H 1.08997 * 109.50280 * 298.56733 * 10 8 7 37 37 H 1.09006 * 109.49888 * 58.66815 * 10 8 7 38 38 H 1.08995 * 109.59072 * 174.42552 * 11 10 8 39 39 H 1.09003 * 109.58785 * 294.71049 * 11 10 8 40 40 H 0.97010 * 119.99606 * 179.97438 * 16 15 13 41 41 H 1.08998 * 109.46793 * 59.99747 * 23 21 12 42 42 H 1.08996 * 109.46761 * 179.97438 * 23 21 12 43 43 H 1.08995 * 109.46929 * 300.00040 * 23 21 12 44 44 H 1.09004 * 109.49543 * 301.33650 * 24 8 7 45 45 H 1.09001 * 109.49844 * 61.43273 * 24 8 7 46 46 H 1.08991 * 109.47531 * 29.99840 * 28 27 3 47 47 H 1.09000 * 109.46759 * 150.00567 * 28 27 3 48 48 H 1.08996 * 109.47366 * 60.00275 * 29 28 27 49 49 H 1.09007 * 109.47164 * 180.02562 * 29 28 27 50 50 H 1.09005 * 109.47291 * 300.00218 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.3038 2.1883 -1.0969 5 6 2.1552 1.7664 -2.5027 6 8 1.7590 0.6467 -2.7628 7 7 2.4583 2.6223 -3.4987 8 6 2.3113 2.2032 -4.8948 9 1 1.4519 1.5389 -4.9859 10 6 3.5755 1.4656 -5.3415 11 6 3.4044 0.9987 -6.7905 12 7 3.0564 2.1583 -7.6230 13 6 3.7861 2.4576 -8.7424 14 1 3.8656 3.4812 -9.0774 15 6 4.4235 1.4454 -9.4466 16 7 4.0989 0.1883 -9.2306 17 14 5.7419 1.8673 -10.7008 18 1 5.9190 3.3407 -10.7562 19 1 7.0232 1.2288 -10.3061 20 1 5.3313 1.3681 -12.0377 21 6 1.9109 2.9909 -7.2312 22 1 0.9914 2.4126 -7.3205 23 6 1.8349 4.2191 -8.1404 24 6 2.0989 3.4354 -5.7773 25 7 2.7290 3.3927 -0.6788 26 7 2.7397 3.4223 0.6084 27 7 2.3002 2.1783 1.0826 28 6 2.1583 1.7785 2.4849 29 6 0.7491 2.1208 2.9726 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 -0.3634 -1.0277 -0.0005 33 1 1.8933 -0.5138 -0.8901 34 1 1.8934 -0.5139 0.8899 35 1 2.7738 3.5158 -3.2912 36 1 4.4315 2.1370 -5.2743 37 1 3.7391 0.6012 -4.6978 38 1 4.3370 0.5605 -7.1458 39 1 2.6083 0.2561 -6.8435 40 1 4.5441 -0.5191 -9.7230 41 1 1.7126 3.8983 -9.1749 42 1 0.9843 4.8351 -7.8484 43 1 2.7531 4.7986 -8.0458 44 1 1.2113 3.9731 -5.4437 45 1 2.9687 4.0883 -5.7060 46 1 2.3233 0.7049 2.5752 47 1 2.8917 2.3111 3.0904 48 1 0.0157 1.5884 2.3671 49 1 0.6436 1.8238 4.0161 50 1 0.5842 3.1945 2.8823 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000947719842.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:03:33 Heat of formation + Delta-G solvation = 44.112630 kcal Electronic energy + Delta-G solvation = -29795.845375 eV Core-core repulsion = 25859.430354 eV Total energy + Delta-G solvation = -3936.415021 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -43.37806 -40.79796 -39.16749 -36.86443 -36.08749 -34.72894 -34.20364 -33.01087 -31.69657 -31.38472 -30.48645 -27.97270 -26.78022 -25.61793 -25.13735 -24.44357 -23.58998 -22.41256 -21.40829 -21.20335 -20.87705 -19.05629 -18.22165 -17.47107 -17.27361 -16.86638 -16.81383 -15.86355 -15.81136 -15.74135 -15.62727 -15.41309 -15.09041 -14.84602 -14.72028 -14.52833 -14.29816 -13.89792 -13.78732 -13.43226 -13.32514 -13.14148 -12.94615 -12.77027 -12.71778 -12.66933 -12.60254 -12.34886 -12.33616 -12.05265 -12.01282 -11.90789 -11.81391 -11.69760 -11.48457 -11.34260 -11.21257 -10.94489 -10.54152 -10.30786 -9.93727 -8.62560 -7.81488 -5.27374 0.08859 0.59201 1.06248 1.47539 1.49661 1.59497 2.12029 2.22869 2.54261 3.11559 3.33696 3.38265 3.50411 3.61851 3.70491 3.88257 3.95692 4.08289 4.10374 4.23385 4.28393 4.28799 4.40448 4.42377 4.49911 4.62831 4.63828 4.73411 4.75180 4.78211 4.84111 4.87128 4.96287 4.97334 5.07906 5.08972 5.13297 5.17675 5.21114 5.37095 5.41507 5.47904 5.51705 5.56932 5.58285 5.74227 5.76056 6.45462 6.46533 6.89146 7.17051 7.19720 7.91365 8.44057 9.26024 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.023173 B = 0.002454 C = 0.002404 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1208.027404 B =11408.478166 C =11644.693390 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.064 4.064 3 C 0.136 3.864 4 C -0.128 4.128 5 C 0.600 3.400 6 O -0.559 6.559 7 N -0.702 5.702 8 C 0.164 3.836 9 H 0.066 0.934 10 C -0.130 4.130 11 C 0.184 3.816 12 N -0.603 5.603 13 C -0.245 4.245 14 H 0.079 0.921 15 C -0.058 4.058 16 N -0.940 5.940 17 Si 0.963 3.037 18 H -0.263 1.263 19 H -0.295 1.295 20 H -0.295 1.295 21 C 0.161 3.839 22 H 0.016 0.984 23 C -0.127 4.127 24 C -0.120 4.120 25 N -0.223 5.223 26 N -0.088 5.088 27 N -0.346 5.346 28 C 0.102 3.898 29 C -0.169 4.169 30 H 0.070 0.930 31 H 0.036 0.964 32 H 0.087 0.913 33 H 0.095 0.905 34 H 0.116 0.884 35 H 0.411 0.589 36 H 0.055 0.945 37 H 0.048 0.952 38 H 0.056 0.944 39 H -0.007 1.007 40 H 0.247 0.753 41 H 0.042 0.958 42 H 0.076 0.924 43 H 0.053 0.947 44 H 0.087 0.913 45 H 0.070 0.930 46 H 0.133 0.867 47 H 0.120 0.880 48 H 0.064 0.936 49 H 0.113 0.887 50 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.405 2.981 27.542 28.676 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.103 4.103 3 C -0.003 4.003 4 C -0.268 4.268 5 C 0.385 3.615 6 O -0.438 6.438 7 N -0.351 5.351 8 C 0.060 3.940 9 H 0.085 0.915 10 C -0.171 4.171 11 C 0.058 3.942 12 N -0.327 5.327 13 C -0.376 4.376 14 H 0.096 0.904 15 C -0.252 4.252 16 N -0.587 5.587 17 Si 0.792 3.208 18 H -0.188 1.188 19 H -0.222 1.222 20 H -0.222 1.222 21 C 0.055 3.945 22 H 0.034 0.966 23 C -0.185 4.185 24 C -0.159 4.159 25 N -0.096 5.096 26 N -0.067 5.067 27 N -0.132 5.132 28 C -0.017 4.017 29 C -0.227 4.227 30 H 0.089 0.911 31 H 0.056 0.944 32 H 0.106 0.894 33 H 0.113 0.887 34 H 0.135 0.865 35 H 0.247 0.753 36 H 0.074 0.926 37 H 0.067 0.933 38 H 0.075 0.925 39 H 0.011 0.989 40 H 0.056 0.944 41 H 0.061 0.939 42 H 0.095 0.905 43 H 0.072 0.928 44 H 0.105 0.895 45 H 0.089 0.911 46 H 0.150 0.850 47 H 0.138 0.862 48 H 0.083 0.917 49 H 0.132 0.868 50 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -7.128 3.518 27.718 28.835 hybrid contribution 0.717 -0.735 -1.185 1.568 sum -6.411 2.783 26.532 27.437 Atomic orbital electron populations 1.21705 0.92307 1.03835 1.01802 1.20585 0.97838 0.85715 1.06151 1.22269 0.95221 0.96911 0.85945 1.21224 1.17077 0.93122 0.95333 1.16995 0.76889 0.84390 0.83200 1.90756 1.48441 1.20539 1.84028 1.45910 1.66484 1.17268 1.05457 1.20740 0.97454 0.96755 0.79033 0.91537 1.22323 0.97683 0.99332 0.97714 1.20455 0.98415 0.88234 0.87129 1.44434 1.31519 1.30303 1.26481 1.19575 1.23382 0.92594 1.02022 0.90355 1.25850 1.03414 0.95535 1.00442 1.70197 1.43915 0.99409 1.45174 0.85261 0.78978 0.78104 0.78477 1.18753 1.22208 1.22240 1.20618 0.89061 0.92145 0.92673 0.96627 1.21712 1.01502 0.96318 0.98928 1.22204 1.02703 0.96013 0.95023 1.74559 1.11571 1.18586 1.04905 1.81851 1.21072 1.00830 1.02974 1.50805 1.43647 1.09909 1.08835 1.22560 1.01287 1.04170 0.73670 1.22259 0.93918 1.02403 1.04110 0.91114 0.94427 0.89442 0.88693 0.86538 0.75256 0.92603 0.93280 0.92524 0.98938 0.94429 0.93909 0.90523 0.92830 0.89495 0.91095 0.84960 0.86234 0.91667 0.86804 0.92965 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.97 9.89 71.98 0.71 -1.26 16 2 C -0.06 -1.01 5.62 29.85 0.17 -0.84 16 3 C 0.14 2.88 6.27 41.72 0.26 3.14 16 4 C -0.13 -3.58 6.99 40.82 0.29 -3.29 16 5 C 0.60 19.45 7.78 86.69 0.67 20.12 16 6 O -0.56 -20.49 14.38 -4.02 -0.06 -20.54 16 7 N -0.70 -22.02 5.07 -445.58 -2.26 -24.28 16 8 C 0.16 5.92 2.42 45.02 0.11 6.03 16 9 H 0.07 2.66 7.57 -2.39 -0.02 2.64 16 10 C -0.13 -5.43 5.65 30.67 0.17 -5.26 16 11 C 0.18 9.39 5.29 86.36 0.46 9.85 16 12 N -0.60 -30.38 2.99 -675.24 -2.02 -32.40 16 13 C -0.25 -13.31 8.60 84.03 0.72 -12.59 16 14 H 0.08 4.06 6.21 -2.91 -0.02 4.04 16 15 C -0.06 -3.27 4.96 84.86 0.42 -2.85 16 16 N -0.94 -57.01 11.14 21.65 0.24 -56.77 16 17 Si 0.96 45.59 29.58 68.60 2.03 47.62 16 18 H -0.26 -11.70 7.11 99.48 0.71 -10.99 16 19 H -0.29 -14.08 7.11 99.48 0.71 -13.37 16 20 H -0.30 -14.05 7.11 99.48 0.71 -13.34 16 21 C 0.16 6.58 3.49 44.98 0.16 6.74 16 22 H 0.02 0.69 8.14 -2.39 -0.02 0.67 16 23 C -0.13 -4.54 7.95 71.98 0.57 -3.97 16 24 C -0.12 -4.00 4.85 30.67 0.15 -3.85 16 25 N -0.22 -6.38 12.04 -50.00 -0.60 -6.98 16 26 N -0.09 -2.20 13.78 37.02 0.51 -1.69 16 27 N -0.35 -6.14 3.63 -333.78 -1.21 -7.36 16 28 C 0.10 0.69 7.02 86.38 0.61 1.30 16 29 C -0.17 -0.85 10.24 71.98 0.74 -0.11 16 30 H 0.07 0.71 6.13 -2.39 -0.01 0.70 16 31 H 0.04 0.76 8.14 -2.39 -0.02 0.74 16 32 H 0.09 0.97 8.14 -2.39 -0.02 0.95 16 33 H 0.09 2.06 6.43 -2.38 -0.02 2.05 16 34 H 0.12 0.90 7.18 -2.39 -0.02 0.89 16 35 H 0.41 11.54 8.29 -92.71 -0.77 10.78 16 36 H 0.06 2.32 8.14 -2.39 -0.02 2.30 16 37 H 0.05 2.06 8.14 -2.38 -0.02 2.04 16 38 H 0.06 3.25 6.06 -2.39 -0.01 3.24 16 39 H -0.01 -0.41 8.14 -2.39 -0.02 -0.43 16 40 H 0.25 14.54 8.31 -92.70 -0.77 13.77 16 41 H 0.04 1.68 7.62 -2.39 -0.02 1.66 16 42 H 0.08 2.15 8.14 -2.39 -0.02 2.13 16 43 H 0.05 1.91 7.44 -2.39 -0.02 1.89 16 44 H 0.09 2.41 8.14 -2.39 -0.02 2.39 16 45 H 0.07 2.33 8.14 -2.39 -0.02 2.31 16 46 H 0.13 0.13 7.16 -2.39 -0.02 0.12 16 47 H 0.12 0.55 8.14 -2.39 -0.02 0.53 16 48 H 0.06 0.39 6.13 -2.39 -0.01 0.38 16 49 H 0.11 -0.05 8.14 -2.38 -0.02 -0.07 16 50 H 0.05 0.47 8.14 -2.38 -0.02 0.45 16 Total: -1.00 -73.82 393.19 3.02 -70.80 By element: Atomic # 1 Polarization: 18.26 SS G_CDS: 0.18 Total: 18.44 kcal Atomic # 6 Polarization: 6.95 SS G_CDS: 6.21 Total: 13.15 kcal Atomic # 7 Polarization: -124.14 SS G_CDS: -5.34 Total: -129.48 kcal Atomic # 8 Polarization: -20.49 SS G_CDS: -0.06 Total: -20.54 kcal Atomic # 14 Polarization: 45.59 SS G_CDS: 2.03 Total: 47.62 kcal Total: -73.82 3.02 -70.80 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000947719842.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.915 kcal (2) G-P(sol) polarization free energy of solvation -73.819 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.096 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.017 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.802 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.113 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds