Wall clock time and date at job start Tue Mar 31 2020 18:34:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.36594 * 126.57981 * 2 1 4 4 C 1.47525 * 125.76879 * 0.03781 * 3 2 1 5 5 O 1.21601 * 120.00062 * 359.72362 * 4 3 2 6 6 N 1.34773 * 119.99758 * 179.71380 * 4 3 2 7 7 C 1.46506 * 119.99728 * 180.02562 * 6 4 3 8 8 H 1.08998 * 109.45051 * 324.96873 * 7 6 4 9 9 C 1.53044 * 109.48608 * 84.91866 * 7 6 4 10 10 C 1.53184 * 109.33901 * 181.35278 * 9 7 6 11 11 N 1.46934 * 108.77548 * 305.37789 * 10 9 7 12 12 C 1.36931 * 120.63078 * 233.62953 * 11 10 9 13 13 H 1.07997 * 119.99943 * 150.86131 * 12 11 10 14 14 C 1.38815 * 120.00296 * 330.86436 * 12 11 10 15 15 N 1.31621 * 120.00294 * 160.75343 * 14 12 11 16 16 Si 1.86800 * 119.99811 * 340.76199 * 14 12 11 17 17 H 1.48496 * 109.47675 * 92.25387 * 16 14 12 18 18 H 1.48506 * 109.46699 * 212.25472 * 16 14 12 19 19 H 1.48503 * 109.47131 * 332.24824 * 16 14 12 20 20 C 1.46926 * 118.73584 * 53.61292 * 11 10 9 21 21 H 1.08999 * 109.58722 * 66.17521 * 20 11 10 22 22 C 1.52995 * 109.58320 * 186.60228 * 20 11 10 23 23 C 1.53039 * 109.46089 * 205.00057 * 7 6 4 24 24 N 1.34398 * 108.45821 * 179.77808 * 3 2 1 25 25 N 1.28765 * 109.52599 * 0.23049 * 24 3 2 26 26 N 1.34814 * 126.57979 * 180.17525 * 2 1 3 27 27 C 1.46494 * 126.59759 * 0.02562 * 26 2 1 28 28 C 1.52999 * 109.47362 * 120.27664 * 27 26 2 29 29 C 1.53008 * 109.47411 * 240.27645 * 27 26 2 30 30 H 1.08997 * 109.47600 * 90.02580 * 1 2 3 31 31 H 1.09009 * 109.46541 * 210.02055 * 1 2 3 32 32 H 1.09000 * 109.47146 * 330.01426 * 1 2 3 33 33 H 0.97000 * 120.00248 * 0.02562 * 6 4 3 34 34 H 1.09000 * 109.47096 * 61.39868 * 9 7 6 35 35 H 1.08995 * 109.52024 * 301.33827 * 9 7 6 36 36 H 1.09002 * 109.58838 * 185.59381 * 10 9 7 37 37 H 1.08994 * 109.70847 * 65.23825 * 10 9 7 38 38 H 0.96992 * 120.00559 * 180.02562 * 15 14 12 39 39 H 1.09003 * 109.46981 * 179.28821 * 22 20 11 40 40 H 1.09003 * 109.47404 * 299.29043 * 22 20 11 41 41 H 1.08999 * 109.47779 * 59.28872 * 22 20 11 42 42 H 1.09005 * 109.49541 * 58.66284 * 23 7 6 43 43 H 1.09001 * 109.49717 * 298.60365 * 23 7 6 44 44 H 1.09003 * 109.47465 * 0.27394 * 27 26 2 45 45 H 1.08998 * 109.47312 * 59.99864 * 28 27 26 46 46 H 1.09001 * 109.47547 * 180.02562 * 28 27 26 47 47 H 1.09003 * 109.46695 * 299.99951 * 28 27 26 48 48 H 1.08998 * 109.46787 * 299.99844 * 29 27 26 49 49 H 1.08998 * 109.46852 * 59.99680 * 29 27 26 50 50 H 1.09001 * 109.47169 * 180.02562 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3210 1.0969 0.0000 4 6 1.8737 2.5027 0.0008 5 8 0.6858 2.7628 -0.0036 6 7 2.7816 3.4987 0.0065 7 6 2.3374 4.8948 0.0079 8 1 1.4277 4.9867 -0.5854 9 6 2.0552 5.3393 1.4449 10 6 1.5588 6.7885 1.4394 11 7 2.5403 7.6219 0.7317 12 6 3.0631 8.7399 1.3248 13 1 4.0570 9.0739 1.0660 14 6 2.3156 9.4440 2.2589 15 7 2.9133 10.2646 3.0967 16 14 0.4616 9.2267 2.3270 17 1 0.1237 8.1580 3.3010 18 1 -0.1709 10.5015 2.7517 19 1 -0.0422 8.8483 0.9823 20 6 2.9505 7.2327 -0.6244 21 1 2.1024 7.3238 -1.3030 22 6 4.0885 8.1400 -1.0962 23 6 3.4313 5.7785 -0.5957 24 7 3.5984 0.6789 0.0049 25 7 3.6299 -0.6084 0.0031 26 7 2.3104 -1.0826 -0.0033 27 6 1.8865 -2.4848 -0.0081 28 6 2.4354 -3.1794 -1.2560 29 6 2.4230 -3.1843 1.2425 30 1 -0.3634 -0.0005 -1.0276 31 1 -0.3633 -0.8899 0.5142 32 1 -0.3633 0.8901 0.5136 33 1 3.7292 3.2912 0.0098 34 1 2.9704 5.2705 2.0329 35 1 1.2925 4.6951 1.8823 36 1 1.4512 7.1419 2.4649 37 1 0.5966 6.8455 0.9305 38 1 2.3911 10.7563 3.7497 39 1 4.3998 7.8416 -2.0973 40 1 3.7444 9.1741 -1.1159 41 1 4.9320 8.0508 -0.4118 42 1 3.6478 5.4468 -1.6113 43 1 4.3339 5.7056 0.0110 44 1 0.7976 -2.5353 -0.0136 45 1 3.5242 -3.1291 -1.2505 46 1 2.1196 -4.2226 -1.2598 47 1 2.0531 -2.6811 -2.1469 48 1 3.5118 -3.1339 1.2480 49 1 2.0319 -2.6895 2.1315 50 1 2.1079 -4.2277 1.2386 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000947867508.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:34:17 Heat of formation + Delta-G solvation = 71.979554 kcal Electronic energy + Delta-G solvation = -29652.934308 eV Core-core repulsion = 25717.727687 eV Total energy + Delta-G solvation = -3935.206621 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -42.49299 -39.58953 -37.83291 -36.78718 -34.73877 -33.25426 -32.36265 -31.81641 -31.14579 -29.99351 -28.02218 -27.94960 -26.50236 -24.78741 -24.27678 -23.23590 -22.48557 -20.79980 -20.65979 -20.03916 -19.29320 -17.84486 -16.75754 -16.44903 -16.31929 -15.90672 -15.22602 -14.97234 -14.65585 -14.52602 -14.40666 -13.92886 -13.79907 -13.68425 -13.50419 -13.36073 -13.28982 -13.09609 -12.86420 -12.77416 -12.45277 -12.20809 -12.13319 -11.90852 -11.79815 -11.77910 -11.30813 -11.27716 -11.10979 -10.96201 -10.55035 -10.45147 -10.33606 -10.13228 -10.05211 -9.93603 -9.64074 -9.37956 -9.30315 -8.73682 -8.54006 -6.89068 -5.88324 -3.25788 0.92272 1.62564 1.70976 3.24916 3.33140 3.39101 3.54320 3.58286 3.81823 3.95410 4.18104 4.29487 4.33943 4.58165 4.59785 4.74992 4.90660 4.93266 4.97210 5.07884 5.09492 5.17271 5.22743 5.35085 5.36039 5.45689 5.48299 5.50925 5.63121 5.69660 5.77140 5.83446 6.04656 6.11905 6.16514 6.20436 6.26974 6.32689 6.44486 6.49404 6.55665 6.70243 6.76797 6.87064 7.01354 7.11394 7.57932 7.85821 8.04023 8.30460 8.41392 9.00453 9.79201 10.17029 11.27306 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.022895 B = 0.002500 C = 0.002393 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1222.674130 B =11197.622610 C =11697.677847 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.096 4.096 2 C 0.121 3.879 3 C -0.103 4.103 4 C 0.603 3.397 5 O -0.540 6.540 6 N -0.707 5.707 7 C 0.152 3.848 8 H 0.084 0.916 9 C -0.141 4.141 10 C 0.129 3.871 11 N -0.603 5.603 12 C -0.257 4.257 13 H 0.092 0.908 14 C 0.023 3.977 15 N -0.911 5.911 16 Si 0.881 3.119 17 H -0.289 1.289 18 H -0.305 1.305 19 H -0.270 1.270 20 C 0.176 3.824 21 H 0.032 0.968 22 C -0.136 4.136 23 C -0.136 4.136 24 N -0.204 5.204 25 N -0.066 5.066 26 N -0.358 5.358 27 C 0.144 3.856 28 C -0.162 4.162 29 C -0.164 4.164 30 H 0.091 0.909 31 H 0.072 0.928 32 H 0.114 0.886 33 H 0.405 0.595 34 H 0.066 0.934 35 H 0.058 0.942 36 H 0.075 0.925 37 H 0.027 0.973 38 H 0.261 0.739 39 H 0.040 0.960 40 H 0.065 0.935 41 H 0.058 0.942 42 H 0.060 0.940 43 H 0.069 0.931 44 H 0.109 0.891 45 H 0.074 0.926 46 H 0.082 0.918 47 H 0.064 0.936 48 H 0.074 0.926 49 H 0.064 0.936 50 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.198 -28.479 -8.419 29.869 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.016 4.016 3 C -0.243 4.243 4 C 0.387 3.613 5 O -0.417 6.417 6 N -0.356 5.356 7 C 0.048 3.952 8 H 0.102 0.898 9 C -0.181 4.181 10 C 0.003 3.997 11 N -0.327 5.327 12 C -0.385 4.385 13 H 0.109 0.891 14 C -0.176 4.176 15 N -0.554 5.554 16 Si 0.711 3.289 17 H -0.217 1.217 18 H -0.233 1.233 19 H -0.195 1.195 20 C 0.069 3.931 21 H 0.050 0.950 22 C -0.193 4.193 23 C -0.176 4.176 24 N -0.077 5.077 25 N -0.046 5.046 26 N -0.146 5.146 27 C 0.042 3.958 28 C -0.220 4.220 29 C -0.221 4.221 30 H 0.109 0.891 31 H 0.091 0.909 32 H 0.132 0.868 33 H 0.240 0.760 34 H 0.085 0.915 35 H 0.076 0.924 36 H 0.093 0.907 37 H 0.045 0.955 38 H 0.071 0.929 39 H 0.059 0.941 40 H 0.084 0.916 41 H 0.077 0.923 42 H 0.079 0.921 43 H 0.088 0.912 44 H 0.127 0.873 45 H 0.093 0.907 46 H 0.101 0.899 47 H 0.083 0.917 48 H 0.094 0.906 49 H 0.083 0.917 50 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -2.558 -28.557 -8.301 29.849 hybrid contribution -1.578 -0.174 0.267 1.610 sum -4.136 -28.731 -8.034 30.118 Atomic orbital electron populations 1.20729 0.84794 1.05371 1.04601 1.21932 0.96237 0.86378 0.97094 1.21319 0.89000 0.95579 1.18398 1.16737 0.85750 0.82419 0.76439 1.90762 1.15901 1.83557 1.51435 1.46062 1.09930 1.06240 1.73377 1.21039 0.98439 0.77992 0.97688 0.89753 1.22397 1.01623 0.98446 0.95628 1.21313 0.91857 0.88915 0.97573 1.44495 1.49627 1.26994 1.11621 1.18926 0.98774 1.01265 1.19512 0.89088 1.25320 0.97551 0.96781 0.97908 1.69816 1.35124 1.30747 1.19719 0.86981 0.88145 0.75560 0.78181 1.21656 1.23322 1.19478 1.20371 0.95262 0.90554 0.86909 0.95035 1.21801 0.98428 1.00519 0.98593 1.22390 0.98199 0.97155 0.99877 1.74616 1.19094 1.04178 1.09820 1.81911 0.96308 1.03273 1.23078 1.50625 1.06333 1.07189 1.50412 1.21642 1.00478 0.75327 0.98327 1.22154 1.03215 1.00869 0.95774 1.22169 1.03313 1.00851 0.95802 0.89088 0.90879 0.86772 0.76048 0.91544 0.92368 0.90739 0.95511 0.92871 0.94057 0.91619 0.92282 0.92101 0.91188 0.87297 0.90657 0.89900 0.91716 0.90648 0.91671 0.89899 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.76 9.40 36.01 0.34 -0.42 16 2 C 0.12 1.31 7.02 -81.87 -0.57 0.73 16 3 C -0.10 -1.41 6.99 -83.55 -0.58 -1.99 16 4 C 0.60 9.23 7.78 -12.48 -0.10 9.13 16 5 O -0.54 -9.23 14.38 5.28 0.08 -9.16 16 6 N -0.71 -10.55 5.08 -54.80 -0.28 -10.83 16 7 C 0.15 2.55 2.42 -67.88 -0.16 2.39 16 8 H 0.08 1.51 7.58 -51.93 -0.39 1.12 16 9 C -0.14 -2.67 5.65 -26.61 -0.15 -2.82 16 10 C 0.13 2.91 4.20 -3.71 -0.02 2.89 16 11 N -0.60 -14.19 2.75 -164.78 -0.45 -14.64 16 12 C -0.26 -7.02 9.05 -15.06 -0.14 -7.16 16 13 H 0.09 2.62 6.38 -52.49 -0.34 2.28 16 14 C 0.02 0.67 5.24 -17.43 -0.09 0.57 16 15 N -0.91 -27.99 13.97 55.49 0.78 -27.21 16 16 Si 0.88 22.76 24.34 -169.99 -4.14 18.62 16 17 H -0.29 -7.28 6.62 56.52 0.37 -6.90 16 18 H -0.30 -8.03 7.11 56.52 0.40 -7.62 16 19 H -0.27 -6.87 6.63 56.52 0.37 -6.50 16 20 C 0.18 3.42 3.50 -67.60 -0.24 3.19 16 21 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 22 C -0.14 -2.47 7.94 37.15 0.30 -2.18 16 23 C -0.14 -2.23 4.84 -26.61 -0.13 -2.36 16 24 N -0.20 -2.85 12.04 32.85 0.40 -2.45 16 25 N -0.07 -0.83 13.67 60.35 0.82 -0.01 16 26 N -0.36 -3.43 3.28 -50.40 -0.17 -3.60 16 27 C 0.14 0.77 3.68 -67.93 -0.25 0.52 16 28 C -0.16 -0.72 9.47 37.16 0.35 -0.37 16 29 C -0.16 -0.76 9.47 37.16 0.35 -0.41 16 30 H 0.09 0.62 8.14 -51.93 -0.42 0.19 16 31 H 0.07 0.36 7.20 -51.92 -0.37 -0.02 16 32 H 0.11 1.14 6.43 -51.93 -0.33 0.81 16 33 H 0.40 5.51 8.29 -40.82 -0.34 5.17 16 34 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 35 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 36 H 0.07 1.83 4.62 -51.93 -0.24 1.59 16 37 H 0.03 0.61 7.02 -51.93 -0.36 0.24 16 38 H 0.26 7.68 8.31 -40.82 -0.34 7.34 16 39 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 40 H 0.06 1.30 7.66 -51.93 -0.40 0.90 16 41 H 0.06 1.12 7.40 -51.93 -0.38 0.74 16 42 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 43 H 0.07 1.17 8.14 -51.93 -0.42 0.74 16 44 H 0.11 0.34 6.80 -51.93 -0.35 -0.01 16 45 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 46 H 0.08 0.18 8.14 -51.93 -0.42 -0.25 16 47 H 0.06 0.33 8.14 -51.93 -0.42 -0.10 16 48 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 49 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 50 H 0.08 0.19 8.14 -51.93 -0.42 -0.23 16 LS Contribution 390.05 15.07 5.88 5.88 Total: -1.00 -33.48 390.05 -6.38 -39.85 By element: Atomic # 1 Polarization: 10.04 SS G_CDS: -8.20 Total: 1.84 kcal Atomic # 6 Polarization: 2.80 SS G_CDS: -1.09 Total: 1.71 kcal Atomic # 7 Polarization: -59.84 SS G_CDS: 1.10 Total: -58.74 kcal Atomic # 8 Polarization: -9.23 SS G_CDS: 0.08 Total: -9.16 kcal Atomic # 14 Polarization: 22.76 SS G_CDS: -4.14 Total: 18.62 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -33.48 -6.38 -39.85 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000947867508.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.831 kcal (2) G-P(sol) polarization free energy of solvation -33.476 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.355 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.376 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.852 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.980 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds