Wall clock time and date at job start Tue Mar 31 2020 18:34:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.36594 * 126.57981 * 2 1 4 4 C 1.47525 * 125.76879 * 0.03781 * 3 2 1 5 5 O 1.21601 * 120.00062 * 359.72362 * 4 3 2 6 6 N 1.34773 * 119.99758 * 179.71380 * 4 3 2 7 7 C 1.46506 * 119.99728 * 180.02562 * 6 4 3 8 8 H 1.08998 * 109.45051 * 324.96873 * 7 6 4 9 9 C 1.53044 * 109.48608 * 84.91866 * 7 6 4 10 10 C 1.53184 * 109.33901 * 181.35278 * 9 7 6 11 11 N 1.46934 * 108.77548 * 305.37789 * 10 9 7 12 12 C 1.36931 * 120.63078 * 233.62953 * 11 10 9 13 13 H 1.07997 * 119.99943 * 150.86131 * 12 11 10 14 14 C 1.38815 * 120.00296 * 330.86436 * 12 11 10 15 15 N 1.31621 * 120.00294 * 160.75343 * 14 12 11 16 16 Si 1.86800 * 119.99811 * 340.76199 * 14 12 11 17 17 H 1.48496 * 109.47675 * 92.25387 * 16 14 12 18 18 H 1.48506 * 109.46699 * 212.25472 * 16 14 12 19 19 H 1.48503 * 109.47131 * 332.24824 * 16 14 12 20 20 C 1.46926 * 118.73584 * 53.61292 * 11 10 9 21 21 H 1.08999 * 109.58722 * 66.17521 * 20 11 10 22 22 C 1.52995 * 109.58320 * 186.60228 * 20 11 10 23 23 C 1.53039 * 109.46089 * 205.00057 * 7 6 4 24 24 N 1.34398 * 108.45821 * 179.77808 * 3 2 1 25 25 N 1.28765 * 109.52599 * 0.23049 * 24 3 2 26 26 N 1.34814 * 126.57979 * 180.17525 * 2 1 3 27 27 C 1.46494 * 126.59759 * 0.02562 * 26 2 1 28 28 C 1.52999 * 109.47362 * 120.27664 * 27 26 2 29 29 C 1.53008 * 109.47411 * 240.27645 * 27 26 2 30 30 H 1.08997 * 109.47600 * 90.02580 * 1 2 3 31 31 H 1.09009 * 109.46541 * 210.02055 * 1 2 3 32 32 H 1.09000 * 109.47146 * 330.01426 * 1 2 3 33 33 H 0.97000 * 120.00248 * 0.02562 * 6 4 3 34 34 H 1.09000 * 109.47096 * 61.39868 * 9 7 6 35 35 H 1.08995 * 109.52024 * 301.33827 * 9 7 6 36 36 H 1.09002 * 109.58838 * 185.59381 * 10 9 7 37 37 H 1.08994 * 109.70847 * 65.23825 * 10 9 7 38 38 H 0.96992 * 120.00559 * 180.02562 * 15 14 12 39 39 H 1.09003 * 109.46981 * 179.28821 * 22 20 11 40 40 H 1.09003 * 109.47404 * 299.29043 * 22 20 11 41 41 H 1.08999 * 109.47779 * 59.28872 * 22 20 11 42 42 H 1.09005 * 109.49541 * 58.66284 * 23 7 6 43 43 H 1.09001 * 109.49717 * 298.60365 * 23 7 6 44 44 H 1.09003 * 109.47465 * 0.27394 * 27 26 2 45 45 H 1.08998 * 109.47312 * 59.99864 * 28 27 26 46 46 H 1.09001 * 109.47547 * 180.02562 * 28 27 26 47 47 H 1.09003 * 109.46695 * 299.99951 * 28 27 26 48 48 H 1.08998 * 109.46787 * 299.99844 * 29 27 26 49 49 H 1.08998 * 109.46852 * 59.99680 * 29 27 26 50 50 H 1.09001 * 109.47169 * 180.02562 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3210 1.0969 0.0000 4 6 1.8737 2.5027 0.0008 5 8 0.6858 2.7628 -0.0036 6 7 2.7816 3.4987 0.0065 7 6 2.3374 4.8948 0.0079 8 1 1.4277 4.9867 -0.5854 9 6 2.0552 5.3393 1.4449 10 6 1.5588 6.7885 1.4394 11 7 2.5403 7.6219 0.7317 12 6 3.0631 8.7399 1.3248 13 1 4.0570 9.0739 1.0660 14 6 2.3156 9.4440 2.2589 15 7 2.9133 10.2646 3.0967 16 14 0.4616 9.2267 2.3270 17 1 0.1237 8.1580 3.3010 18 1 -0.1709 10.5015 2.7517 19 1 -0.0422 8.8483 0.9823 20 6 2.9505 7.2327 -0.6244 21 1 2.1024 7.3238 -1.3030 22 6 4.0885 8.1400 -1.0962 23 6 3.4313 5.7785 -0.5957 24 7 3.5984 0.6789 0.0049 25 7 3.6299 -0.6084 0.0031 26 7 2.3104 -1.0826 -0.0033 27 6 1.8865 -2.4848 -0.0081 28 6 2.4354 -3.1794 -1.2560 29 6 2.4230 -3.1843 1.2425 30 1 -0.3634 -0.0005 -1.0276 31 1 -0.3633 -0.8899 0.5142 32 1 -0.3633 0.8901 0.5136 33 1 3.7292 3.2912 0.0098 34 1 2.9704 5.2705 2.0329 35 1 1.2925 4.6951 1.8823 36 1 1.4512 7.1419 2.4649 37 1 0.5966 6.8455 0.9305 38 1 2.3911 10.7563 3.7497 39 1 4.3998 7.8416 -2.0973 40 1 3.7444 9.1741 -1.1159 41 1 4.9320 8.0508 -0.4118 42 1 3.6478 5.4468 -1.6113 43 1 4.3339 5.7056 0.0110 44 1 0.7976 -2.5353 -0.0136 45 1 3.5242 -3.1291 -1.2505 46 1 2.1196 -4.2226 -1.2598 47 1 2.0531 -2.6811 -2.1469 48 1 3.5118 -3.1339 1.2480 49 1 2.0319 -2.6895 2.1315 50 1 2.1079 -4.2277 1.2386 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000947867508.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:34:16 Heat of formation + Delta-G solvation = 48.164326 kcal Electronic energy + Delta-G solvation = -29653.967014 eV Core-core repulsion = 25717.727687 eV Total energy + Delta-G solvation = -3936.239327 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -43.35561 -40.88054 -39.35499 -37.37772 -36.19852 -34.26499 -33.97475 -33.33532 -32.35595 -31.38806 -28.90095 -28.28659 -28.00962 -26.52612 -25.04439 -24.57829 -23.97862 -22.14062 -21.59620 -21.20888 -20.71667 -18.81394 -18.32988 -17.64791 -17.27501 -17.20776 -16.84240 -16.33836 -15.81064 -15.60136 -15.34662 -15.28883 -15.13126 -14.83034 -14.77439 -14.32704 -14.24244 -14.03564 -13.98784 -13.83834 -13.48733 -13.25027 -13.20494 -12.98442 -12.86801 -12.73414 -12.63061 -12.53807 -12.43029 -12.23408 -12.00912 -11.94880 -11.87235 -11.71634 -11.51448 -11.36986 -11.16139 -11.03907 -10.69704 -10.30216 -9.96007 -8.87853 -8.10827 -5.43426 0.10512 0.60086 1.03433 1.31474 1.41717 1.50334 2.09443 2.22027 2.45291 3.07771 3.13979 3.28423 3.33895 3.53685 3.70287 3.80054 3.81626 3.94239 3.97029 4.10413 4.21012 4.25056 4.46899 4.49619 4.57751 4.58966 4.62229 4.63233 4.64524 4.70351 4.72659 4.74387 4.83134 4.85994 4.94264 5.00813 5.06221 5.07227 5.12514 5.17308 5.21785 5.23527 5.46396 5.48518 5.56815 5.58565 5.94811 6.23243 6.44247 6.90221 6.96329 7.14479 7.68123 8.09081 9.08556 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.022895 B = 0.002500 C = 0.002393 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1222.674130 B =11197.622610 C =11697.677847 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 C 0.131 3.869 3 C -0.131 4.131 4 C 0.603 3.397 5 O -0.560 6.560 6 N -0.702 5.702 7 C 0.162 3.838 8 H 0.079 0.921 9 C -0.130 4.130 10 C 0.127 3.873 11 N -0.616 5.616 12 C -0.233 4.233 13 H 0.070 0.930 14 C -0.036 4.036 15 N -0.958 5.958 16 Si 0.936 3.064 17 H -0.282 1.282 18 H -0.313 1.313 19 H -0.262 1.262 20 C 0.166 3.834 21 H 0.040 0.960 22 C -0.129 4.129 23 C -0.123 4.123 24 N -0.225 5.225 25 N -0.084 5.084 26 N -0.345 5.345 27 C 0.131 3.869 28 C -0.159 4.159 29 C -0.161 4.161 30 H 0.106 0.894 31 H 0.109 0.891 32 H 0.093 0.907 33 H 0.412 0.588 34 H 0.059 0.941 35 H 0.061 0.939 36 H 0.050 0.950 37 H 0.030 0.970 38 H 0.259 0.741 39 H 0.081 0.919 40 H 0.042 0.958 41 H 0.044 0.956 42 H 0.093 0.907 43 H 0.067 0.933 44 H 0.142 0.858 45 H 0.056 0.944 46 H 0.112 0.888 47 H 0.059 0.941 48 H 0.056 0.944 49 H 0.057 0.943 50 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.526 -32.122 -10.098 33.975 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.009 4.009 3 C -0.271 4.271 4 C 0.389 3.611 5 O -0.439 6.439 6 N -0.351 5.351 7 C 0.058 3.942 8 H 0.097 0.903 9 C -0.170 4.170 10 C 0.001 3.999 11 N -0.341 5.341 12 C -0.362 4.362 13 H 0.087 0.913 14 C -0.230 4.230 15 N -0.605 5.605 16 Si 0.766 3.234 17 H -0.209 1.209 18 H -0.242 1.242 19 H -0.187 1.187 20 C 0.060 3.940 21 H 0.058 0.942 22 C -0.187 4.187 23 C -0.163 4.163 24 N -0.098 5.098 25 N -0.064 5.064 26 N -0.132 5.132 27 C 0.032 3.968 28 C -0.216 4.216 29 C -0.218 4.218 30 H 0.124 0.876 31 H 0.127 0.873 32 H 0.111 0.889 33 H 0.248 0.752 34 H 0.077 0.923 35 H 0.080 0.920 36 H 0.068 0.932 37 H 0.048 0.952 38 H 0.068 0.932 39 H 0.100 0.900 40 H 0.061 0.939 41 H 0.063 0.937 42 H 0.112 0.888 43 H 0.086 0.914 44 H 0.159 0.841 45 H 0.076 0.924 46 H 0.131 0.869 47 H 0.078 0.922 48 H 0.075 0.925 49 H 0.076 0.924 50 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -3.872 -32.276 -10.018 34.016 hybrid contribution -1.130 0.792 0.726 1.559 sum -5.001 -31.484 -9.292 33.206 Atomic orbital electron populations 1.20832 0.82555 1.06114 1.05734 1.22339 0.97421 0.85877 0.95226 1.21229 0.89679 0.95345 1.20860 1.16945 0.85397 0.83124 0.75660 1.90748 1.16667 1.84066 1.52395 1.45883 1.10376 1.05390 1.73495 1.20770 0.98474 0.79152 0.95818 0.90318 1.22229 1.01161 0.96194 0.97416 1.21278 0.91922 0.90649 0.96069 1.44664 1.49708 1.26179 1.13517 1.18917 0.97770 1.01505 1.18038 0.91253 1.25875 1.01072 0.97564 0.98527 1.69932 1.36313 1.33014 1.21283 0.86067 0.83784 0.75064 0.78463 1.20912 1.24241 1.18704 1.20675 0.95931 0.92643 0.84707 0.94193 1.21731 0.97350 0.99046 1.00537 1.22225 0.97546 0.94738 1.01766 1.74581 1.19621 1.04937 1.10639 1.81822 0.98127 1.02814 1.23611 1.50964 1.05150 1.08498 1.48609 1.22206 1.02435 0.73097 0.99061 1.22158 1.02019 1.02493 0.94962 1.22177 1.02104 1.02511 0.95030 0.87573 0.87263 0.88850 0.75190 0.92253 0.92041 0.93187 0.95240 0.93236 0.90009 0.93902 0.93709 0.88842 0.91435 0.84063 0.92435 0.86901 0.92231 0.92455 0.92437 0.86861 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.20 9.40 71.24 0.67 -0.53 16 2 C 0.13 2.55 7.02 41.72 0.29 2.84 16 3 C -0.13 -3.43 6.99 40.82 0.29 -3.14 16 4 C 0.60 17.80 7.78 86.69 0.67 18.47 16 5 O -0.56 -18.52 14.38 -4.04 -0.06 -18.58 16 6 N -0.70 -19.97 5.08 -445.56 -2.26 -22.23 16 7 C 0.16 5.18 2.42 45.02 0.11 5.29 16 8 H 0.08 2.67 7.58 -2.39 -0.02 2.65 16 9 C -0.13 -4.83 5.65 30.67 0.17 -4.66 16 10 C 0.13 5.62 4.20 86.36 0.36 5.98 16 11 N -0.62 -28.79 2.75 -675.25 -1.86 -30.65 16 12 C -0.23 -12.97 9.05 84.04 0.76 -12.21 16 13 H 0.07 4.12 6.38 -2.91 -0.02 4.10 16 14 C -0.04 -2.14 5.24 84.86 0.44 -1.69 16 15 N -0.96 -60.89 13.97 21.65 0.30 -60.59 16 16 Si 0.94 48.01 24.34 68.60 1.67 49.68 16 17 H -0.28 -13.97 6.62 99.48 0.66 -13.31 16 18 H -0.31 -16.35 7.11 99.48 0.71 -15.64 16 19 H -0.26 -12.95 6.63 99.48 0.66 -12.30 16 20 C 0.17 6.19 3.50 44.97 0.16 6.34 16 21 H 0.04 1.47 8.14 -2.39 -0.02 1.45 16 22 C -0.13 -4.54 7.94 71.98 0.57 -3.97 16 23 C -0.12 -3.75 4.84 30.67 0.15 -3.60 16 24 N -0.22 -6.13 12.04 -50.00 -0.60 -6.73 16 25 N -0.08 -2.03 13.67 37.02 0.51 -1.53 16 26 N -0.35 -5.88 3.28 -313.38 -1.03 -6.91 16 27 C 0.13 0.99 3.68 44.99 0.17 1.15 16 28 C -0.16 -0.96 9.47 71.98 0.68 -0.28 16 29 C -0.16 -1.06 9.47 71.98 0.68 -0.38 16 30 H 0.11 1.08 8.14 -2.39 -0.02 1.06 16 31 H 0.11 0.58 7.20 -2.38 -0.02 0.56 16 32 H 0.09 1.70 6.43 -2.39 -0.02 1.68 16 33 H 0.41 10.66 8.29 -92.71 -0.77 9.89 16 34 H 0.06 2.28 8.14 -2.39 -0.02 2.26 16 35 H 0.06 2.24 8.14 -2.39 -0.02 2.22 16 36 H 0.05 2.46 4.62 -2.39 -0.01 2.45 16 37 H 0.03 1.30 7.02 -2.39 -0.02 1.29 16 38 H 0.26 15.76 8.31 -92.71 -0.77 14.99 16 39 H 0.08 2.20 8.14 -2.39 -0.02 2.18 16 40 H 0.04 1.68 7.66 -2.39 -0.02 1.66 16 41 H 0.04 1.68 7.40 -2.39 -0.02 1.66 16 42 H 0.09 2.29 8.14 -2.38 -0.02 2.28 16 43 H 0.07 2.12 8.14 -2.39 -0.02 2.10 16 44 H 0.14 0.20 6.80 -2.39 -0.02 0.18 16 45 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 46 H 0.11 0.02 8.14 -2.39 -0.02 0.00 16 47 H 0.06 0.44 8.14 -2.39 -0.02 0.42 16 48 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 49 H 0.06 0.49 8.14 -2.39 -0.02 0.47 16 50 H 0.11 0.07 8.14 -2.39 -0.02 0.05 16 Total: -1.00 -75.35 390.05 2.94 -72.41 By element: Atomic # 1 Polarization: 15.42 SS G_CDS: 0.08 Total: 15.51 kcal Atomic # 6 Polarization: 3.44 SS G_CDS: 6.18 Total: 9.62 kcal Atomic # 7 Polarization: -123.70 SS G_CDS: -4.94 Total: -128.64 kcal Atomic # 8 Polarization: -18.52 SS G_CDS: -0.06 Total: -18.58 kcal Atomic # 14 Polarization: 48.01 SS G_CDS: 1.67 Total: 49.68 kcal Total: -75.35 2.94 -72.41 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000947867508.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.579 kcal (2) G-P(sol) polarization free energy of solvation -75.351 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.228 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.936 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.415 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.164 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds