Wall clock time and date at job start Tue Mar 31 2020 18:34:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 C 1.36597 * 126.58278 * 2 1 4 4 C 1.47521 * 125.76727 * 0.02562 * 3 2 1 5 5 O 1.21599 * 120.00233 * 359.97438 * 4 3 2 6 6 N 1.34777 * 120.00212 * 180.02562 * 4 3 2 7 7 C 1.46500 * 120.00268 * 180.02562 * 6 4 3 8 8 H 1.09000 * 109.45818 * 34.99056 * 7 6 4 9 9 C 1.53042 * 109.45585 * 275.02455 * 7 6 4 10 10 C 1.53194 * 109.31043 * 301.36770 * 9 7 6 11 11 N 1.46922 * 108.76557 * 305.34616 * 10 9 7 12 12 C 1.36936 * 120.63213 * 233.63689 * 11 10 9 13 13 H 1.08005 * 120.00297 * 150.14510 * 12 11 10 14 14 C 1.38817 * 120.00025 * 330.13984 * 12 11 10 15 15 N 1.31618 * 119.99812 * 344.51103 * 14 12 11 16 16 Si 1.86804 * 119.99789 * 164.50550 * 14 12 11 17 17 H 1.48499 * 109.46792 * 60.00527 * 16 14 12 18 18 H 1.48502 * 109.46480 * 180.02562 * 16 14 12 19 19 H 1.48501 * 109.47231 * 300.00223 * 16 14 12 20 20 C 1.46934 * 118.73906 * 53.61778 * 11 10 9 21 21 H 1.09002 * 109.58525 * 66.17694 * 20 11 10 22 22 C 1.52999 * 109.58666 * 186.60292 * 20 11 10 23 23 C 1.53039 * 109.46182 * 154.96897 * 7 6 4 24 24 N 1.34401 * 108.46335 * 180.26320 * 3 2 1 25 25 N 1.28760 * 109.51896 * 359.58841 * 24 3 2 26 26 N 1.34819 * 126.58224 * 180.02562 * 2 1 3 27 27 C 1.46502 * 126.59430 * 0.02562 * 26 2 1 28 28 C 1.53002 * 109.47357 * 119.99755 * 27 26 2 29 29 C 1.53000 * 109.46731 * 239.99873 * 27 26 2 30 30 H 1.09003 * 109.47366 * 89.97445 * 1 2 3 31 31 H 1.09011 * 109.46907 * 209.97490 * 1 2 3 32 32 H 1.08994 * 109.47329 * 329.97129 * 1 2 3 33 33 H 0.96993 * 119.99800 * 359.97438 * 6 4 3 34 34 H 1.08996 * 109.50196 * 61.30785 * 9 7 6 35 35 H 1.09001 * 109.49633 * 181.40556 * 9 7 6 36 36 H 1.08998 * 109.58446 * 185.56609 * 10 9 7 37 37 H 1.09003 * 109.71349 * 65.20612 * 10 9 7 38 38 H 0.96999 * 119.99615 * 179.97438 * 15 14 12 39 39 H 1.09004 * 109.47041 * 179.29345 * 22 20 11 40 40 H 1.09005 * 109.46993 * 299.28991 * 22 20 11 41 41 H 1.08999 * 109.47254 * 59.28684 * 22 20 11 42 42 H 1.09002 * 109.49695 * 178.59363 * 23 7 6 43 43 H 1.08995 * 109.49601 * 298.68620 * 23 7 6 44 44 H 1.09005 * 109.46775 * 359.97438 * 27 26 2 45 45 H 1.08995 * 109.46814 * 59.99934 * 28 27 26 46 46 H 1.08994 * 109.47067 * 180.02562 * 28 27 26 47 47 H 1.09001 * 109.46785 * 299.99525 * 28 27 26 48 48 H 1.09002 * 109.47413 * 60.00096 * 29 27 26 49 49 H 1.09002 * 109.47064 * 179.97438 * 29 27 26 50 50 H 1.09000 * 109.47091 * 299.99101 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3210 1.0969 0.0000 4 6 1.8737 2.5026 0.0005 5 8 0.6859 2.7628 0.0006 6 7 2.7816 3.4987 0.0000 7 6 2.3375 4.8948 0.0011 8 1 1.4257 4.9853 0.5915 9 6 2.0609 5.3428 -1.4359 10 6 3.3350 5.1813 -2.2711 11 7 4.4276 5.9094 -1.6119 12 6 5.1603 6.8400 -2.2992 13 1 5.5938 7.6797 -1.7763 14 6 5.3460 6.7041 -3.6682 15 7 5.0930 5.5537 -4.2556 16 14 5.9547 8.1539 -4.6766 17 1 7.2852 8.5819 -4.1749 18 1 6.0682 7.7525 -6.1019 19 1 4.9941 9.2798 -4.5549 20 6 4.7190 5.6205 -0.2011 21 1 5.0892 4.5997 -0.1061 22 6 5.7729 6.6015 0.3164 23 6 3.4294 5.7768 0.6107 24 7 3.5984 0.6789 -0.0059 25 7 3.6299 -0.6083 -0.0008 26 7 2.3104 -1.0826 -0.0005 27 6 1.8864 -2.4849 -0.0016 28 6 2.4296 -3.1810 -1.2512 29 6 2.4288 -3.1826 1.2473 30 1 -0.3634 0.0005 -1.0277 31 1 -0.3633 -0.8903 0.5135 32 1 -0.3633 0.8897 0.5142 33 1 3.7291 3.2913 -0.0004 34 1 1.2668 4.7296 -1.8618 35 1 1.7543 6.3889 -1.4382 36 1 3.1725 5.5904 -3.2682 37 1 3.5933 4.1251 -2.3471 38 1 5.2224 5.4589 -5.2122 39 1 5.9785 6.3936 1.3664 40 1 6.6896 6.4887 -0.2626 41 1 5.4016 7.6212 0.2138 42 1 3.1098 6.8187 0.5890 43 1 3.6094 5.4725 1.6417 44 1 0.7975 -2.5352 -0.0016 45 1 3.5183 -3.1306 -1.2508 46 1 2.1137 -4.2242 -1.2522 47 1 2.0430 -2.6839 -2.1409 48 1 2.0418 -2.6868 2.1375 49 1 2.1130 -4.2259 1.2467 50 1 3.5176 -3.1324 1.2476 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000947867510.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:34:26 Heat of formation + Delta-G solvation = 69.777613 kcal Electronic energy + Delta-G solvation = -30259.687790 eV Core-core repulsion = 26324.385686 eV Total energy + Delta-G solvation = -3935.302104 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -42.26991 -39.48287 -37.52346 -36.60011 -34.27345 -33.06345 -32.26580 -31.51491 -30.67463 -29.52702 -27.79869 -27.77828 -26.29989 -24.92079 -24.08116 -23.28787 -21.87458 -20.60471 -20.48866 -20.12188 -18.48877 -17.72463 -16.58504 -16.22146 -16.21312 -15.34970 -15.04725 -14.85540 -14.54764 -14.20858 -13.95171 -13.91320 -13.62993 -13.57028 -13.31558 -13.18469 -13.04244 -12.75474 -12.67839 -12.58269 -12.35900 -12.01989 -11.96467 -11.74590 -11.60415 -11.35540 -11.12088 -11.04888 -10.93381 -10.63281 -10.55208 -10.34871 -10.24063 -10.07724 -9.99860 -9.70283 -9.59483 -9.22315 -9.10240 -8.48347 -8.37975 -6.54115 -5.70142 -3.14382 1.13346 1.87433 1.91651 3.42547 3.48504 3.49135 3.50044 3.60067 3.99538 4.15576 4.34127 4.44939 4.54336 4.55322 4.79823 4.93399 5.04909 5.13578 5.22815 5.26143 5.34095 5.40192 5.43042 5.47380 5.52475 5.66325 5.67599 5.70075 5.75826 5.78907 5.97501 6.07990 6.21399 6.32933 6.39432 6.40037 6.45784 6.52723 6.65349 6.70171 6.84931 7.04128 7.11168 7.14841 7.46574 7.77088 7.84485 7.88881 8.11507 8.54098 8.55348 9.29605 9.93399 10.51016 11.37957 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.016200 B = 0.002960 C = 0.002804 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1728.014322 B = 9456.866413 C = 9983.735330 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 C 0.118 3.882 3 C -0.100 4.100 4 C 0.603 3.397 5 O -0.549 6.549 6 N -0.695 5.695 7 C 0.155 3.845 8 H 0.074 0.926 9 C -0.153 4.153 10 C 0.176 3.824 11 N -0.586 5.586 12 C -0.250 4.250 13 H 0.069 0.931 14 C 0.003 3.997 15 N -0.901 5.901 16 Si 0.900 3.100 17 H -0.283 1.283 18 H -0.292 1.292 19 H -0.285 1.285 20 C 0.167 3.833 21 H 0.023 0.977 22 C -0.136 4.136 23 C -0.139 4.139 24 N -0.199 5.199 25 N -0.067 5.067 26 N -0.360 5.360 27 C 0.145 3.855 28 C -0.163 4.163 29 C -0.162 4.162 30 H 0.090 0.910 31 H 0.070 0.930 32 H 0.112 0.888 33 H 0.409 0.591 34 H 0.053 0.947 35 H 0.064 0.936 36 H 0.083 0.917 37 H 0.019 0.981 38 H 0.252 0.748 39 H 0.038 0.962 40 H 0.061 0.939 41 H 0.054 0.946 42 H 0.075 0.925 43 H 0.056 0.944 44 H 0.108 0.892 45 H 0.075 0.925 46 H 0.081 0.919 47 H 0.065 0.935 48 H 0.063 0.937 49 H 0.081 0.919 50 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.620 -16.567 11.036 22.108 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.020 4.020 3 C -0.240 4.240 4 C 0.387 3.613 5 O -0.427 6.427 6 N -0.346 5.346 7 C 0.051 3.949 8 H 0.092 0.908 9 C -0.193 4.193 10 C 0.050 3.950 11 N -0.310 5.310 12 C -0.380 4.380 13 H 0.086 0.914 14 C -0.195 4.195 15 N -0.545 5.545 16 Si 0.730 3.270 17 H -0.210 1.210 18 H -0.218 1.218 19 H -0.211 1.211 20 C 0.060 3.940 21 H 0.040 0.960 22 C -0.194 4.194 23 C -0.178 4.178 24 N -0.072 5.072 25 N -0.046 5.046 26 N -0.147 5.147 27 C 0.043 3.957 28 C -0.221 4.221 29 C -0.220 4.220 30 H 0.109 0.891 31 H 0.089 0.911 32 H 0.131 0.869 33 H 0.246 0.754 34 H 0.072 0.928 35 H 0.082 0.918 36 H 0.101 0.899 37 H 0.037 0.963 38 H 0.063 0.937 39 H 0.057 0.943 40 H 0.080 0.920 41 H 0.073 0.927 42 H 0.094 0.906 43 H 0.074 0.926 44 H 0.126 0.874 45 H 0.094 0.906 46 H 0.100 0.900 47 H 0.084 0.916 48 H 0.082 0.918 49 H 0.100 0.900 50 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -8.917 -16.823 10.845 21.912 hybrid contribution -0.169 0.614 -0.754 0.987 sum -9.086 -16.209 10.091 21.145 Atomic orbital electron populations 1.20694 0.84944 1.05041 1.04585 1.21882 0.96124 0.86427 0.97550 1.21323 0.88970 0.95621 1.18047 1.16699 0.85667 0.82477 0.76409 1.90713 1.15968 1.83678 1.52379 1.45958 1.10318 1.05917 1.72373 1.20936 0.97174 0.79018 0.97791 0.90783 1.22556 1.00821 1.00470 0.95460 1.20690 0.83674 0.94827 0.95804 1.44108 1.34963 1.45984 1.05900 1.19113 1.27750 1.00785 0.90368 0.91384 1.25097 1.00046 0.96151 0.98255 1.70026 1.52576 1.22079 1.09862 0.86419 0.78747 0.82499 0.79356 1.20973 1.21789 1.21126 1.20398 0.91502 0.95898 0.86231 0.95988 1.21795 0.99775 0.99611 0.98177 1.22363 0.97404 0.99727 0.98344 1.74671 1.19065 1.04013 1.09413 1.81927 0.96159 1.03396 1.23110 1.50621 1.06425 1.07065 1.50628 1.21604 1.00344 0.75502 0.98240 1.22158 1.03345 1.00721 0.95878 1.22158 1.03314 1.00737 0.95824 0.89140 0.91085 0.86915 0.75397 0.92781 0.91750 0.89859 0.96296 0.93748 0.94336 0.91975 0.92724 0.90610 0.92572 0.87429 0.90608 0.90028 0.91627 0.91788 0.90032 0.90642 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.88 9.41 36.00 0.34 -0.54 16 2 C 0.12 1.51 7.02 -81.88 -0.57 0.93 16 3 C -0.10 -1.62 6.99 -83.55 -0.58 -2.21 16 4 C 0.60 10.63 7.78 -12.48 -0.10 10.54 16 5 O -0.55 -10.13 14.38 5.28 0.08 -10.05 16 6 N -0.70 -12.47 4.26 -54.81 -0.23 -12.70 16 7 C 0.15 2.78 2.78 -67.89 -0.19 2.59 16 8 H 0.07 1.29 7.58 -51.93 -0.39 0.90 16 9 C -0.15 -3.10 5.77 -26.61 -0.15 -3.26 16 10 C 0.18 4.27 5.02 -3.71 -0.02 4.26 16 11 N -0.59 -14.40 2.99 -164.77 -0.49 -14.89 16 12 C -0.25 -6.74 8.58 -15.06 -0.13 -6.87 16 13 H 0.07 1.78 6.23 -52.48 -0.33 1.45 16 14 C 0.00 0.09 4.94 -17.43 -0.09 0.00 16 15 N -0.90 -26.47 11.23 55.49 0.62 -25.85 16 16 Si 0.90 21.88 29.58 -169.99 -5.03 16.86 16 17 H -0.28 -6.81 7.11 56.52 0.40 -6.40 16 18 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 19 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 20 C 0.17 3.41 3.20 -67.60 -0.22 3.19 16 21 H 0.02 0.48 6.64 -51.93 -0.34 0.13 16 22 C -0.14 -2.56 7.95 37.16 0.30 -2.26 16 23 C -0.14 -2.41 5.07 -26.62 -0.13 -2.54 16 24 N -0.20 -3.41 12.04 32.85 0.40 -3.01 16 25 N -0.07 -1.01 13.67 60.35 0.82 -0.18 16 26 N -0.36 -4.20 3.28 -50.40 -0.17 -4.36 16 27 C 0.14 1.03 3.68 -67.93 -0.25 0.78 16 28 C -0.16 -1.07 9.47 37.16 0.35 -0.72 16 29 C -0.16 -0.96 9.47 37.16 0.35 -0.61 16 30 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 31 H 0.07 0.42 7.18 -51.92 -0.37 0.05 16 32 H 0.11 1.23 6.43 -51.93 -0.33 0.90 16 33 H 0.41 7.57 6.55 -40.82 -0.27 7.30 16 34 H 0.05 1.10 8.14 -51.93 -0.42 0.67 16 35 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16 36 H 0.08 2.29 6.15 -51.93 -0.32 1.97 16 37 H 0.02 0.50 7.74 -51.93 -0.40 0.09 16 38 H 0.25 7.25 8.31 -40.82 -0.34 6.91 16 39 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 40 H 0.06 1.27 7.67 -51.93 -0.40 0.87 16 41 H 0.05 1.03 7.40 -51.93 -0.38 0.65 16 42 H 0.08 1.31 8.14 -51.93 -0.42 0.89 16 43 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 44 H 0.11 0.50 6.79 -51.93 -0.35 0.15 16 45 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 46 H 0.08 0.32 8.14 -51.93 -0.42 -0.11 16 47 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 48 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 49 H 0.08 0.28 8.14 -51.93 -0.42 -0.14 16 50 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 LS Contribution 392.25 15.07 5.91 5.91 Total: -1.00 -32.48 392.25 -7.29 -39.77 By element: Atomic # 1 Polarization: 13.33 SS G_CDS: -8.10 Total: 5.22 kcal Atomic # 6 Polarization: 4.39 SS G_CDS: -1.10 Total: 3.29 kcal Atomic # 7 Polarization: -61.95 SS G_CDS: 0.95 Total: -61.00 kcal Atomic # 8 Polarization: -10.13 SS G_CDS: 0.08 Total: -10.05 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.03 Total: 16.86 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -32.48 -7.29 -39.77 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000947867510.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.546 kcal (2) G-P(sol) polarization free energy of solvation -32.480 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.066 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.289 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.768 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.778 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds