Wall clock time and date at job start Tue Mar 31 2020 18:34:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 C 1.36597 * 126.58278 * 2 1 4 4 C 1.47521 * 125.76727 * 0.02562 * 3 2 1 5 5 O 1.21599 * 120.00233 * 359.97438 * 4 3 2 6 6 N 1.34777 * 120.00212 * 180.02562 * 4 3 2 7 7 C 1.46500 * 120.00268 * 180.02562 * 6 4 3 8 8 H 1.09000 * 109.45818 * 34.99056 * 7 6 4 9 9 C 1.53042 * 109.45585 * 275.02455 * 7 6 4 10 10 C 1.53194 * 109.31043 * 301.36770 * 9 7 6 11 11 N 1.46922 * 108.76557 * 305.34616 * 10 9 7 12 12 C 1.36936 * 120.63213 * 233.63689 * 11 10 9 13 13 H 1.08005 * 120.00297 * 150.14510 * 12 11 10 14 14 C 1.38817 * 120.00025 * 330.13984 * 12 11 10 15 15 N 1.31618 * 119.99812 * 344.51103 * 14 12 11 16 16 Si 1.86804 * 119.99789 * 164.50550 * 14 12 11 17 17 H 1.48499 * 109.46792 * 60.00527 * 16 14 12 18 18 H 1.48502 * 109.46480 * 180.02562 * 16 14 12 19 19 H 1.48501 * 109.47231 * 300.00223 * 16 14 12 20 20 C 1.46934 * 118.73906 * 53.61778 * 11 10 9 21 21 H 1.09002 * 109.58525 * 66.17694 * 20 11 10 22 22 C 1.52999 * 109.58666 * 186.60292 * 20 11 10 23 23 C 1.53039 * 109.46182 * 154.96897 * 7 6 4 24 24 N 1.34401 * 108.46335 * 180.26320 * 3 2 1 25 25 N 1.28760 * 109.51896 * 359.58841 * 24 3 2 26 26 N 1.34819 * 126.58224 * 180.02562 * 2 1 3 27 27 C 1.46502 * 126.59430 * 0.02562 * 26 2 1 28 28 C 1.53002 * 109.47357 * 119.99755 * 27 26 2 29 29 C 1.53000 * 109.46731 * 239.99873 * 27 26 2 30 30 H 1.09003 * 109.47366 * 89.97445 * 1 2 3 31 31 H 1.09011 * 109.46907 * 209.97490 * 1 2 3 32 32 H 1.08994 * 109.47329 * 329.97129 * 1 2 3 33 33 H 0.96993 * 119.99800 * 359.97438 * 6 4 3 34 34 H 1.08996 * 109.50196 * 61.30785 * 9 7 6 35 35 H 1.09001 * 109.49633 * 181.40556 * 9 7 6 36 36 H 1.08998 * 109.58446 * 185.56609 * 10 9 7 37 37 H 1.09003 * 109.71349 * 65.20612 * 10 9 7 38 38 H 0.96999 * 119.99615 * 179.97438 * 15 14 12 39 39 H 1.09004 * 109.47041 * 179.29345 * 22 20 11 40 40 H 1.09005 * 109.46993 * 299.28991 * 22 20 11 41 41 H 1.08999 * 109.47254 * 59.28684 * 22 20 11 42 42 H 1.09002 * 109.49695 * 178.59363 * 23 7 6 43 43 H 1.08995 * 109.49601 * 298.68620 * 23 7 6 44 44 H 1.09005 * 109.46775 * 359.97438 * 27 26 2 45 45 H 1.08995 * 109.46814 * 59.99934 * 28 27 26 46 46 H 1.08994 * 109.47067 * 180.02562 * 28 27 26 47 47 H 1.09001 * 109.46785 * 299.99525 * 28 27 26 48 48 H 1.09002 * 109.47413 * 60.00096 * 29 27 26 49 49 H 1.09002 * 109.47064 * 179.97438 * 29 27 26 50 50 H 1.09000 * 109.47091 * 299.99101 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3210 1.0969 0.0000 4 6 1.8737 2.5026 0.0005 5 8 0.6859 2.7628 0.0006 6 7 2.7816 3.4987 0.0000 7 6 2.3375 4.8948 0.0011 8 1 1.4257 4.9853 0.5915 9 6 2.0609 5.3428 -1.4359 10 6 3.3350 5.1813 -2.2711 11 7 4.4276 5.9094 -1.6119 12 6 5.1603 6.8400 -2.2992 13 1 5.5938 7.6797 -1.7763 14 6 5.3460 6.7041 -3.6682 15 7 5.0930 5.5537 -4.2556 16 14 5.9547 8.1539 -4.6766 17 1 7.2852 8.5819 -4.1749 18 1 6.0682 7.7525 -6.1019 19 1 4.9941 9.2798 -4.5549 20 6 4.7190 5.6205 -0.2011 21 1 5.0892 4.5997 -0.1061 22 6 5.7729 6.6015 0.3164 23 6 3.4294 5.7768 0.6107 24 7 3.5984 0.6789 -0.0059 25 7 3.6299 -0.6083 -0.0008 26 7 2.3104 -1.0826 -0.0005 27 6 1.8864 -2.4849 -0.0016 28 6 2.4296 -3.1810 -1.2512 29 6 2.4288 -3.1826 1.2473 30 1 -0.3634 0.0005 -1.0277 31 1 -0.3633 -0.8903 0.5135 32 1 -0.3633 0.8897 0.5142 33 1 3.7291 3.2913 -0.0004 34 1 1.2668 4.7296 -1.8618 35 1 1.7543 6.3889 -1.4382 36 1 3.1725 5.5904 -3.2682 37 1 3.5933 4.1251 -2.3471 38 1 5.2224 5.4589 -5.2122 39 1 5.9785 6.3936 1.3664 40 1 6.6896 6.4887 -0.2626 41 1 5.4016 7.6212 0.2138 42 1 3.1098 6.8187 0.5890 43 1 3.6094 5.4725 1.6417 44 1 0.7975 -2.5352 -0.0016 45 1 3.5183 -3.1306 -1.2508 46 1 2.1137 -4.2242 -1.2522 47 1 2.0430 -2.6839 -2.1409 48 1 2.0418 -2.6868 2.1375 49 1 2.1130 -4.2259 1.2467 50 1 3.5176 -3.1324 1.2476 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000947867510.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:34:25 Heat of formation + Delta-G solvation = 48.336405 kcal Electronic energy + Delta-G solvation = -30260.617551 eV Core-core repulsion = 26324.385686 eV Total energy + Delta-G solvation = -3936.231865 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -43.33147 -40.93354 -39.10102 -37.36720 -35.91508 -34.15332 -33.91910 -32.98193 -32.00232 -31.13593 -28.79635 -28.28492 -27.92601 -26.80575 -25.05300 -24.48740 -23.62297 -22.24157 -21.60463 -21.17933 -20.11463 -18.79087 -18.22459 -17.39949 -17.27176 -17.07307 -16.64831 -16.02686 -15.69603 -15.57525 -15.45465 -15.25398 -15.12249 -14.72052 -14.46692 -14.17943 -14.07092 -13.99149 -13.96426 -13.32780 -13.25743 -13.20204 -13.16227 -12.95439 -12.80754 -12.65364 -12.53757 -12.48613 -12.40236 -12.28961 -12.17710 -11.96971 -11.92296 -11.69461 -11.39254 -11.15211 -11.05100 -10.96951 -10.48914 -10.26970 -9.89910 -8.57062 -7.80384 -5.26811 0.12943 0.63431 1.07201 1.47466 1.49819 1.55856 2.18174 2.30497 2.54461 3.18348 3.31856 3.34564 3.56244 3.64467 3.73246 3.80668 3.95851 3.98543 4.11203 4.12380 4.22032 4.45924 4.52599 4.60987 4.62462 4.62762 4.66088 4.69691 4.72171 4.74817 4.80942 4.85662 4.93656 4.98915 5.04540 5.12746 5.14446 5.17423 5.20454 5.22717 5.43160 5.54170 5.55056 5.57461 5.62943 5.74890 5.78574 6.45805 6.48583 6.92573 7.18033 7.20940 7.93450 8.46147 9.25777 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.016200 B = 0.002960 C = 0.002804 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1728.014322 B = 9456.866413 C = 9983.735330 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.091 4.091 2 C 0.131 3.869 3 C -0.134 4.134 4 C 0.603 3.397 5 O -0.560 6.560 6 N -0.700 5.700 7 C 0.160 3.840 8 H 0.090 0.910 9 C -0.140 4.140 10 C 0.189 3.811 11 N -0.601 5.601 12 C -0.248 4.248 13 H 0.077 0.923 14 C -0.056 4.056 15 N -0.938 5.938 16 Si 0.962 3.038 17 H -0.275 1.275 18 H -0.300 1.300 19 H -0.278 1.278 20 C 0.158 3.842 21 H 0.012 0.988 22 C -0.129 4.129 23 C -0.125 4.125 24 N -0.232 5.232 25 N -0.088 5.088 26 N -0.345 5.345 27 C 0.131 3.869 28 C -0.161 4.161 29 C -0.158 4.158 30 H 0.101 0.899 31 H 0.113 0.887 32 H 0.098 0.902 33 H 0.405 0.595 34 H 0.050 0.950 35 H 0.069 0.931 36 H 0.045 0.955 37 H -0.011 1.011 38 H 0.245 0.755 39 H 0.075 0.925 40 H 0.038 0.962 41 H 0.054 0.946 42 H 0.083 0.917 43 H 0.087 0.913 44 H 0.145 0.855 45 H 0.053 0.947 46 H 0.116 0.884 47 H 0.054 0.946 48 H 0.061 0.939 49 H 0.114 0.886 50 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.253 -17.480 13.034 24.537 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.009 4.009 3 C -0.274 4.274 4 C 0.388 3.612 5 O -0.440 6.440 6 N -0.349 5.349 7 C 0.056 3.944 8 H 0.108 0.892 9 C -0.180 4.180 10 C 0.063 3.937 11 N -0.325 5.325 12 C -0.379 4.379 13 H 0.095 0.905 14 C -0.250 4.250 15 N -0.585 5.585 16 Si 0.791 3.209 17 H -0.201 1.201 18 H -0.227 1.227 19 H -0.204 1.204 20 C 0.053 3.947 21 H 0.030 0.970 22 C -0.186 4.186 23 C -0.164 4.164 24 N -0.105 5.105 25 N -0.067 5.067 26 N -0.132 5.132 27 C 0.032 3.968 28 C -0.218 4.218 29 C -0.216 4.216 30 H 0.119 0.881 31 H 0.132 0.868 32 H 0.116 0.884 33 H 0.241 0.759 34 H 0.068 0.932 35 H 0.088 0.912 36 H 0.064 0.936 37 H 0.007 0.993 38 H 0.054 0.946 39 H 0.094 0.906 40 H 0.057 0.943 41 H 0.073 0.927 42 H 0.101 0.899 43 H 0.105 0.895 44 H 0.162 0.838 45 H 0.072 0.928 46 H 0.134 0.866 47 H 0.073 0.927 48 H 0.080 0.920 49 H 0.133 0.867 50 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -10.541 -17.752 12.885 24.336 hybrid contribution 0.306 0.742 -1.334 1.557 sum -10.234 -17.009 11.550 22.967 Atomic orbital electron populations 1.20836 0.82125 1.06421 1.05574 1.22378 0.97536 0.85668 0.95290 1.21364 0.89584 0.95803 1.20633 1.16910 0.85448 0.83086 0.75754 1.90690 1.16188 1.84093 1.52998 1.45977 1.10165 1.06051 1.72731 1.20890 0.98176 0.79306 0.96070 0.89228 1.22364 0.98239 1.00806 0.96551 1.20353 0.85705 0.92627 0.94972 1.44355 1.34962 1.45638 1.07507 1.19494 1.26520 1.01194 0.90666 0.90527 1.25847 1.01301 0.98335 0.99548 1.70208 1.54806 1.24094 1.09396 0.85416 0.78562 0.79652 0.77272 1.20077 1.22712 1.20426 1.20640 0.93871 0.95857 0.84371 0.97013 1.21727 0.97928 0.99027 0.99955 1.22233 0.94993 1.00056 0.99139 1.74633 1.20115 1.05031 1.10672 1.81812 0.98320 1.02790 1.23823 1.50998 1.05093 1.08569 1.48578 1.22227 1.02531 0.73023 0.99023 1.22173 1.01919 1.02631 0.95121 1.22163 1.01958 1.02532 0.94938 0.88090 0.86836 0.88374 0.75918 0.93177 0.91241 0.93623 0.99317 0.94645 0.90647 0.94312 0.92689 0.89865 0.89470 0.83761 0.92761 0.86575 0.92680 0.92036 0.86704 0.92693 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.46 9.41 71.23 0.67 -0.79 16 2 C 0.13 3.19 7.02 41.71 0.29 3.49 16 3 C -0.13 -4.38 6.99 40.82 0.29 -4.10 16 4 C 0.60 21.39 7.78 86.69 0.67 22.06 16 5 O -0.56 -20.43 14.38 -4.03 -0.06 -20.49 16 6 N -0.70 -25.28 4.26 -445.58 -1.90 -27.18 16 7 C 0.16 5.59 2.78 45.02 0.13 5.72 16 8 H 0.09 2.94 7.58 -2.39 -0.02 2.92 16 9 C -0.14 -5.71 5.77 30.67 0.18 -5.53 16 10 C 0.19 9.60 5.02 86.36 0.43 10.03 16 11 N -0.60 -30.04 2.99 -675.22 -2.02 -32.06 16 12 C -0.25 -13.53 8.58 84.03 0.72 -12.81 16 13 H 0.08 3.98 6.23 -2.91 -0.02 3.96 16 14 C -0.06 -3.16 4.94 84.86 0.42 -2.74 16 15 N -0.94 -57.57 11.23 21.65 0.24 -57.32 16 16 Si 0.96 45.94 29.58 68.60 2.03 47.97 16 17 H -0.28 -12.62 7.11 99.48 0.71 -11.92 16 18 H -0.30 -14.64 7.11 99.48 0.71 -13.94 16 19 H -0.28 -12.85 7.11 99.48 0.71 -12.14 16 20 C 0.16 6.39 3.20 44.97 0.14 6.54 16 21 H 0.01 0.52 6.64 -2.39 -0.02 0.51 16 22 C -0.13 -4.65 7.95 71.98 0.57 -4.08 16 23 C -0.12 -4.08 5.07 30.67 0.16 -3.93 16 24 N -0.23 -8.24 12.04 -50.00 -0.60 -8.84 16 25 N -0.09 -2.73 13.67 37.02 0.51 -2.22 16 26 N -0.35 -7.66 3.28 -313.38 -1.03 -8.69 16 27 C 0.13 1.50 3.68 44.99 0.17 1.67 16 28 C -0.16 -1.79 9.47 71.98 0.68 -1.11 16 29 C -0.16 -1.47 9.47 71.98 0.68 -0.79 16 30 H 0.10 1.47 8.14 -2.39 -0.02 1.45 16 31 H 0.11 0.83 7.18 -2.38 -0.02 0.81 16 32 H 0.10 1.96 6.43 -2.39 -0.02 1.95 16 33 H 0.40 15.41 6.55 -92.71 -0.61 14.80 16 34 H 0.05 2.06 8.14 -2.39 -0.02 2.04 16 35 H 0.07 2.76 8.14 -2.39 -0.02 2.74 16 36 H 0.05 2.64 6.15 -2.39 -0.01 2.62 16 37 H -0.01 -0.63 7.74 -2.39 -0.02 -0.65 16 38 H 0.24 14.73 8.31 -92.71 -0.77 13.96 16 39 H 0.07 2.15 8.14 -2.38 -0.02 2.13 16 40 H 0.04 1.55 7.67 -2.38 -0.02 1.53 16 41 H 0.05 1.96 7.40 -2.39 -0.02 1.95 16 42 H 0.08 2.64 8.14 -2.39 -0.02 2.62 16 43 H 0.09 2.36 8.14 -2.39 -0.02 2.35 16 44 H 0.14 0.65 6.79 -2.38 -0.02 0.63 16 45 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 46 H 0.12 0.49 8.14 -2.39 -0.02 0.47 16 47 H 0.05 0.74 8.14 -2.39 -0.02 0.72 16 48 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 49 H 0.11 0.33 8.14 -2.39 -0.02 0.31 16 50 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 Total: -1.00 -74.90 392.25 3.71 -71.19 By element: Atomic # 1 Polarization: 23.67 SS G_CDS: 0.34 Total: 24.01 kcal Atomic # 6 Polarization: 7.43 SS G_CDS: 6.20 Total: 13.63 kcal Atomic # 7 Polarization: -131.51 SS G_CDS: -4.80 Total: -136.31 kcal Atomic # 8 Polarization: -20.43 SS G_CDS: -0.06 Total: -20.49 kcal Atomic # 14 Polarization: 45.94 SS G_CDS: 2.03 Total: 47.97 kcal Total: -74.90 3.71 -71.19 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000947867510.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.525 kcal (2) G-P(sol) polarization free energy of solvation -74.901 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.624 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.712 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.189 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.336 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds