Wall clock time and date at job start Tue Mar 31 2020 18:34:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.36595 * 126.57780 * 2 1 4 4 C 1.47520 * 125.77330 * 0.03697 * 3 2 1 5 5 O 1.21590 * 119.99863 * 359.71756 * 4 3 2 6 6 N 1.34781 * 120.00081 * 179.71786 * 4 3 2 7 7 C 1.46500 * 119.99812 * 179.97438 * 6 4 3 8 8 H 1.08997 * 109.45413 * 325.03869 * 7 6 4 9 9 C 1.53043 * 109.45699 * 85.00285 * 7 6 4 10 10 C 1.53198 * 109.30988 * 181.38454 * 9 7 6 11 11 N 1.46927 * 108.77348 * 305.36050 * 10 9 7 12 12 C 1.36934 * 120.62808 * 233.63220 * 11 10 9 13 13 H 1.08006 * 119.99874 * 152.65554 * 12 11 10 14 14 C 1.38821 * 120.00178 * 332.64457 * 12 11 10 15 15 N 1.31618 * 119.99640 * 159.33315 * 14 12 11 16 16 Si 1.86794 * 120.00019 * 339.33519 * 14 12 11 17 17 H 1.48498 * 109.47080 * 92.98675 * 16 14 12 18 18 H 1.48496 * 109.47013 * 212.98573 * 16 14 12 19 19 H 1.48503 * 109.47413 * 332.98571 * 16 14 12 20 20 C 1.46924 * 118.73717 * 53.61526 * 11 10 9 21 21 H 1.09004 * 109.58609 * 186.60531 * 20 11 10 22 22 C 1.52995 * 109.59049 * 66.17306 * 20 11 10 23 23 C 1.53041 * 109.45848 * 205.06450 * 7 6 4 24 24 N 1.34403 * 108.45728 * 179.77826 * 3 2 1 25 25 N 1.28760 * 109.52537 * 0.22315 * 24 3 2 26 26 N 1.34811 * 126.58321 * 180.16834 * 2 1 3 27 27 C 1.46508 * 126.59169 * 0.02562 * 26 2 1 28 28 C 1.52995 * 109.46873 * 120.27273 * 27 26 2 29 29 C 1.52997 * 109.46767 * 240.27296 * 27 26 2 30 30 H 1.08997 * 109.47317 * 90.02172 * 1 2 3 31 31 H 1.09004 * 109.47109 * 210.02417 * 1 2 3 32 32 H 1.09003 * 109.46866 * 330.02174 * 1 2 3 33 33 H 0.96996 * 119.99885 * 0.02562 * 6 4 3 34 34 H 1.09003 * 109.50197 * 61.43055 * 9 7 6 35 35 H 1.09004 * 109.49917 * 301.32957 * 9 7 6 36 36 H 1.08999 * 109.58597 * 65.15285 * 10 9 7 37 37 H 1.09007 * 109.58450 * 185.43393 * 10 9 7 38 38 H 0.96998 * 119.99475 * 180.02562 * 15 14 12 39 39 H 1.09005 * 109.46881 * 60.00186 * 22 20 11 40 40 H 1.09001 * 109.47143 * 179.97438 * 22 20 11 41 41 H 1.09002 * 109.47195 * 300.00206 * 22 20 11 42 42 H 1.08994 * 109.49539 * 58.66851 * 23 7 6 43 43 H 1.08996 * 109.52425 * 298.58402 * 23 7 6 44 44 H 1.08992 * 109.47176 * 0.27141 * 27 26 2 45 45 H 1.09001 * 109.47215 * 60.00030 * 28 27 26 46 46 H 1.09002 * 109.46651 * 179.97438 * 28 27 26 47 47 H 1.08995 * 109.47489 * 299.99786 * 28 27 26 48 48 H 1.09002 * 109.47153 * 179.97438 * 29 27 26 49 49 H 1.09001 * 109.47259 * 299.99932 * 29 27 26 50 50 H 1.08998 * 109.47540 * 60.00113 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3210 1.0969 0.0000 4 6 1.8737 2.5027 0.0008 5 8 0.6860 2.7627 -0.0037 6 7 2.7817 3.4988 0.0064 7 6 2.3374 4.8948 0.0066 8 1 1.4274 4.9862 -0.5863 9 6 2.0566 5.3402 1.4436 10 6 1.5594 6.7892 1.4369 11 7 2.5400 7.6223 0.7276 12 6 3.0626 8.7412 1.3193 13 1 4.0447 9.0920 1.0383 14 6 2.3301 9.4247 2.2802 15 7 2.9418 10.2231 3.1292 16 14 0.4765 9.2113 2.3683 17 1 0.1479 8.1322 3.3342 18 1 -0.1474 10.4825 2.8152 19 1 -0.0445 8.8494 1.0256 20 6 2.9495 7.2319 -0.6283 21 1 3.7598 7.8783 -0.9657 22 6 1.7584 7.3581 -1.5802 23 6 3.4312 5.7779 -0.5984 24 7 3.5983 0.6789 0.0049 25 7 3.6299 -0.6083 0.0033 26 7 2.3104 -1.0825 -0.0032 27 6 1.8864 -2.4849 -0.0078 28 6 2.4353 -3.1795 -1.2556 29 6 2.4230 -3.1840 1.2428 30 1 -0.3634 -0.0004 -1.0276 31 1 -0.3633 -0.8898 0.5142 32 1 -0.3633 0.8902 0.5135 33 1 3.7292 3.2913 0.0096 34 1 2.9723 5.2725 2.0311 35 1 1.2942 4.6961 1.8818 36 1 0.5974 6.8430 0.9271 37 1 1.4499 7.1428 2.4622 38 1 2.4300 10.7004 3.8008 39 1 1.4093 8.3907 -1.5904 40 1 2.0644 7.0685 -2.5855 41 1 0.9530 6.7056 -1.2429 42 1 3.6471 5.4453 -1.6136 43 1 4.3341 5.7062 0.0079 44 1 0.7976 -2.5352 -0.0132 45 1 3.5241 -3.1291 -1.2502 46 1 2.1201 -4.2229 -1.2588 47 1 2.0530 -2.6814 -2.1466 48 1 2.1071 -4.2272 1.2396 49 1 3.5118 -3.1337 1.2482 50 1 2.0320 -2.6891 2.1318 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000947867511.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:34:29 Heat of formation + Delta-G solvation = 48.292113 kcal Electronic energy + Delta-G solvation = -29797.952952 eV Core-core repulsion = 25861.719167 eV Total energy + Delta-G solvation = -3936.233785 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 1.57 seconds Orbital eigenvalues (eV) -43.35161 -40.94077 -39.40621 -37.37508 -36.12281 -34.38079 -33.97168 -32.90113 -32.37654 -31.39019 -29.03130 -28.34934 -28.28539 -26.09189 -25.04098 -24.57334 -24.20816 -22.78798 -21.55616 -21.01589 -20.13766 -19.01999 -18.45513 -17.77035 -17.27242 -17.22172 -16.79548 -16.02486 -15.78797 -15.59932 -15.33230 -15.29147 -15.10984 -14.85484 -14.52565 -14.35296 -14.22098 -14.04633 -13.98367 -13.94031 -13.78722 -13.24586 -13.20322 -13.08666 -12.97762 -12.72426 -12.60705 -12.53822 -12.43192 -12.29006 -12.03333 -12.02292 -11.94375 -11.72927 -11.44897 -11.25703 -11.14924 -11.00430 -10.70027 -10.29546 -9.94889 -8.93641 -8.14678 -5.45112 0.11002 0.60667 1.03842 1.30715 1.41125 1.50239 2.10838 2.22872 2.43036 3.06327 3.14528 3.28519 3.32949 3.54002 3.69779 3.80212 3.81024 3.95207 3.97321 4.10886 4.22733 4.27844 4.41488 4.51156 4.54888 4.59649 4.62628 4.63675 4.65842 4.70501 4.72507 4.74498 4.81995 4.85038 4.87522 5.03709 5.05264 5.12120 5.15051 5.17437 5.22038 5.24617 5.29085 5.48239 5.57031 5.60845 5.90580 6.16376 6.45119 6.90733 6.94295 7.15328 7.65063 8.06335 9.05199 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.023715 B = 0.002509 C = 0.002464 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1180.383757 B =11157.172013 C =11361.906692 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 C 0.131 3.869 3 C -0.131 4.131 4 C 0.603 3.397 5 O -0.560 6.560 6 N -0.703 5.703 7 C 0.162 3.838 8 H 0.084 0.916 9 C -0.132 4.132 10 C 0.128 3.872 11 N -0.611 5.611 12 C -0.239 4.239 13 H 0.057 0.943 14 C -0.034 4.034 15 N -0.957 5.957 16 Si 0.938 3.062 17 H -0.282 1.282 18 H -0.312 1.312 19 H -0.258 1.258 20 C 0.166 3.834 21 H 0.071 0.929 22 C -0.159 4.159 23 C -0.123 4.123 24 N -0.225 5.225 25 N -0.085 5.085 26 N -0.345 5.345 27 C 0.131 3.869 28 C -0.159 4.159 29 C -0.161 4.161 30 H 0.106 0.894 31 H 0.109 0.891 32 H 0.093 0.907 33 H 0.411 0.589 34 H 0.058 0.942 35 H 0.061 0.939 36 H 0.032 0.968 37 H 0.048 0.952 38 H 0.260 0.740 39 H 0.038 0.962 40 H 0.080 0.920 41 H 0.047 0.953 42 H 0.094 0.906 43 H 0.065 0.935 44 H 0.142 0.858 45 H 0.056 0.944 46 H 0.112 0.888 47 H 0.059 0.941 48 H 0.113 0.887 49 H 0.056 0.944 50 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.517 -32.292 -10.255 34.327 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.009 4.009 3 C -0.271 4.271 4 C 0.389 3.611 5 O -0.438 6.438 6 N -0.352 5.352 7 C 0.058 3.942 8 H 0.102 0.898 9 C -0.172 4.172 10 C 0.002 3.998 11 N -0.334 5.334 12 C -0.369 4.369 13 H 0.075 0.925 14 C -0.229 4.229 15 N -0.603 5.603 16 Si 0.768 3.232 17 H -0.209 1.209 18 H -0.241 1.241 19 H -0.183 1.183 20 C 0.059 3.941 21 H 0.089 0.911 22 C -0.218 4.218 23 C -0.162 4.162 24 N -0.098 5.098 25 N -0.064 5.064 26 N -0.132 5.132 27 C 0.032 3.968 28 C -0.216 4.216 29 C -0.218 4.218 30 H 0.124 0.876 31 H 0.127 0.873 32 H 0.112 0.888 33 H 0.248 0.752 34 H 0.076 0.924 35 H 0.079 0.921 36 H 0.050 0.950 37 H 0.066 0.934 38 H 0.069 0.931 39 H 0.057 0.943 40 H 0.099 0.901 41 H 0.066 0.934 42 H 0.113 0.887 43 H 0.084 0.916 44 H 0.159 0.841 45 H 0.076 0.924 46 H 0.131 0.869 47 H 0.078 0.922 48 H 0.131 0.869 49 H 0.075 0.925 50 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -4.856 -32.445 -10.157 34.343 hybrid contribution -1.008 0.844 0.714 1.496 sum -5.864 -31.601 -9.443 33.499 Atomic orbital electron populations 1.20832 0.82548 1.06115 1.05742 1.22338 0.97421 0.85874 0.95228 1.21239 0.89666 0.95376 1.20841 1.16935 0.85403 0.83105 0.75674 1.90743 1.16640 1.84056 1.52383 1.45901 1.10366 1.05464 1.73487 1.20828 0.98671 0.78999 0.95741 0.89758 1.22255 1.01137 0.96250 0.97542 1.21246 0.92092 0.90577 0.95879 1.44568 1.49755 1.25864 1.13232 1.18869 0.98190 1.02295 1.17502 0.92478 1.25843 1.01366 0.97588 0.98067 1.69958 1.36510 1.34311 1.19549 0.86031 0.83363 0.75135 0.78670 1.20878 1.24125 1.18272 1.20704 0.96121 0.93738 0.83496 0.91053 1.22238 0.99006 1.00864 0.99728 1.22163 0.97439 0.94837 1.01802 1.74582 1.19639 1.04934 1.10640 1.81821 0.98135 1.02824 1.23625 1.50968 1.05150 1.08501 1.48617 1.22202 1.02431 0.73100 0.99051 1.22156 1.02017 1.02489 0.94969 1.22176 1.02098 1.02520 0.95037 0.87561 0.87281 0.88832 0.75247 0.92352 0.92052 0.95027 0.93355 0.93106 0.94279 0.90110 0.93421 0.88733 0.91609 0.84061 0.92450 0.86905 0.92216 0.86863 0.92458 0.92445 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.19 9.40 71.24 0.67 -0.52 16 2 C 0.13 2.54 7.02 41.72 0.29 2.83 16 3 C -0.13 -3.42 6.99 40.81 0.29 -3.13 16 4 C 0.60 17.72 7.78 86.69 0.67 18.40 16 5 O -0.56 -18.36 14.38 -4.00 -0.06 -18.42 16 6 N -0.70 -19.95 5.07 -445.58 -2.26 -22.21 16 7 C 0.16 5.13 2.21 45.02 0.10 5.23 16 8 H 0.08 2.82 5.92 -2.39 -0.01 2.80 16 9 C -0.13 -4.91 5.65 30.68 0.17 -4.74 16 10 C 0.13 5.65 3.79 86.36 0.33 5.98 16 11 N -0.61 -28.57 2.48 -675.19 -1.67 -30.24 16 12 C -0.24 -13.55 10.04 84.04 0.84 -12.71 16 13 H 0.06 3.50 8.06 -2.91 -0.02 3.48 16 14 C -0.03 -2.02 5.23 84.86 0.44 -1.58 16 15 N -0.96 -61.05 13.97 21.65 0.30 -60.75 16 16 Si 0.94 47.94 24.35 68.60 1.67 49.61 16 17 H -0.28 -13.89 6.62 99.48 0.66 -13.23 16 18 H -0.31 -16.20 7.11 99.48 0.71 -15.49 16 19 H -0.26 -12.61 6.63 99.48 0.66 -11.95 16 20 C 0.17 6.15 3.29 44.97 0.15 6.29 16 21 H 0.07 2.71 7.93 -2.38 -0.02 2.69 16 22 C -0.16 -5.26 9.03 71.98 0.65 -4.61 16 23 C -0.12 -3.74 5.02 30.67 0.15 -3.58 16 24 N -0.23 -6.14 12.04 -50.00 -0.60 -6.74 16 25 N -0.08 -2.04 13.67 37.02 0.51 -1.54 16 26 N -0.35 -5.88 3.28 -313.40 -1.03 -6.91 16 27 C 0.13 0.99 3.68 44.99 0.17 1.15 16 28 C -0.16 -0.96 9.47 71.98 0.68 -0.28 16 29 C -0.16 -1.07 9.47 71.98 0.68 -0.38 16 30 H 0.11 1.07 8.14 -2.39 -0.02 1.05 16 31 H 0.11 0.57 7.20 -2.39 -0.02 0.56 16 32 H 0.09 1.69 6.43 -2.39 -0.02 1.67 16 33 H 0.41 10.66 8.29 -92.71 -0.77 9.89 16 34 H 0.06 2.26 8.14 -2.39 -0.02 2.24 16 35 H 0.06 2.24 8.14 -2.38 -0.02 2.22 16 36 H 0.03 1.39 6.43 -2.39 -0.02 1.37 16 37 H 0.05 2.38 4.49 -2.38 -0.01 2.37 16 38 H 0.26 15.84 8.31 -92.71 -0.77 15.07 16 39 H 0.04 1.41 8.14 -2.38 -0.02 1.39 16 40 H 0.08 2.09 8.14 -2.39 -0.02 2.07 16 41 H 0.05 1.59 5.72 -2.39 -0.01 1.57 16 42 H 0.09 2.31 8.14 -2.39 -0.02 2.29 16 43 H 0.07 2.07 8.14 -2.39 -0.02 2.05 16 44 H 0.14 0.19 6.79 -2.39 -0.02 0.18 16 45 H 0.06 0.57 8.14 -2.39 -0.02 0.56 16 46 H 0.11 0.02 8.14 -2.39 -0.02 0.00 16 47 H 0.06 0.44 8.14 -2.39 -0.02 0.42 16 48 H 0.11 0.07 8.14 -2.39 -0.02 0.05 16 49 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 50 H 0.06 0.49 8.14 -2.39 -0.02 0.47 16 Total: -1.00 -75.68 389.08 3.24 -72.45 By element: Atomic # 1 Polarization: 16.29 SS G_CDS: 0.09 Total: 16.38 kcal Atomic # 6 Polarization: 2.07 SS G_CDS: 6.29 Total: 8.36 kcal Atomic # 7 Polarization: -123.62 SS G_CDS: -4.76 Total: -128.38 kcal Atomic # 8 Polarization: -18.36 SS G_CDS: -0.06 Total: -18.42 kcal Atomic # 14 Polarization: 47.94 SS G_CDS: 1.67 Total: 49.61 kcal Total: -75.68 3.24 -72.45 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000947867511.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.738 kcal (2) G-P(sol) polarization free energy of solvation -75.681 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.057 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.235 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.446 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.292 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.57 seconds