Wall clock time and date at job start Tue Mar 31 2020 20:03:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.50698 * 109.47227 * 2 1 4 4 C 1.36600 * 126.57900 * 270.02073 * 3 2 1 5 5 C 1.47522 * 125.77061 * 0.04231 * 4 3 2 6 6 O 1.21597 * 119.99885 * 359.71528 * 5 4 3 7 7 N 1.34774 * 119.99740 * 179.71109 * 5 4 3 8 8 C 1.46506 * 119.99753 * 180.02562 * 7 5 4 9 9 H 1.09004 * 109.49635 * 35.06231 * 8 7 5 10 10 C 1.53197 * 109.49227 * 275.00234 * 8 7 5 11 11 N 1.46921 * 108.77427 * 294.64600 * 10 8 7 12 12 C 1.36938 * 120.62919 * 126.37603 * 11 10 8 13 13 H 1.07993 * 120.00147 * 207.69915 * 12 11 10 14 14 C 1.38816 * 119.99905 * 27.69926 * 12 11 10 15 15 N 1.31620 * 119.99978 * 17.35011 * 14 12 11 16 16 Si 1.86803 * 120.00186 * 197.35375 * 14 12 11 17 17 H 1.48501 * 109.46948 * 89.99731 * 16 14 12 18 18 H 1.48497 * 109.47109 * 209.99787 * 16 14 12 19 19 H 1.48496 * 109.46867 * 330.00185 * 16 14 12 20 20 C 1.46930 * 118.74275 * 306.39455 * 11 10 8 21 21 C 1.53195 * 108.88947 * 53.53911 * 20 11 10 22 22 C 1.53043 * 109.52517 * 155.14811 * 8 7 5 23 23 H 1.08998 * 109.45837 * 178.60928 * 22 8 7 24 24 C 1.52999 * 109.45613 * 298.58124 * 22 8 7 25 25 N 1.34397 * 108.45604 * 179.77887 * 4 3 2 26 26 N 1.28758 * 109.52761 * 0.22704 * 25 4 3 27 27 N 1.34815 * 126.58325 * 90.19632 * 3 2 1 28 28 C 1.46504 * 126.59333 * 359.97438 * 27 3 2 29 29 C 1.52997 * 109.47110 * 270.24909 * 28 27 3 30 30 H 1.08994 * 109.47535 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.47065 * 300.00295 * 1 2 3 32 32 H 1.09003 * 109.47085 * 60.00175 * 1 2 3 33 33 H 1.09004 * 109.47065 * 239.99705 * 2 1 3 34 34 H 1.09003 * 109.47085 * 119.99825 * 2 1 3 35 35 H 0.97001 * 120.00071 * 0.02562 * 7 5 4 36 36 H 1.09011 * 109.58151 * 174.86595 * 10 8 7 37 37 H 1.08991 * 109.58861 * 54.44043 * 10 8 7 38 38 H 0.97006 * 119.99919 * 180.02562 * 15 14 12 39 39 H 1.08997 * 109.58428 * 173.39179 * 20 11 10 40 40 H 1.08990 * 109.58612 * 293.67689 * 20 11 10 41 41 H 1.08998 * 109.49514 * 65.38466 * 21 20 11 42 42 H 1.08999 * 109.49409 * 185.48435 * 21 20 11 43 43 H 1.08997 * 109.47108 * 60.00359 * 24 22 8 44 44 H 1.08995 * 109.46785 * 179.97438 * 24 22 8 45 45 H 1.09003 * 109.47290 * 299.99908 * 24 22 8 46 46 H 1.08998 * 109.46725 * 30.24860 * 28 27 3 47 47 H 1.08997 * 109.47375 * 150.24600 * 28 27 3 48 48 H 1.09007 * 109.47275 * 59.99716 * 29 28 27 49 49 H 1.08998 * 109.46909 * 179.97438 * 29 28 27 50 50 H 1.08999 * 109.46899 * 299.99977 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3033 2.1884 -1.0969 5 6 2.1528 1.7671 -2.5027 6 8 1.7610 0.6458 -2.7628 7 7 2.4497 2.6252 -3.4987 8 6 2.2998 2.2071 -4.8948 9 1 1.4417 1.5409 -4.9849 10 6 3.5662 1.4735 -5.3475 11 7 4.6887 2.4215 -5.3437 12 6 5.8402 2.1366 -4.6596 13 1 6.4541 2.9389 -4.2779 14 6 6.2185 0.8165 -4.4568 15 7 5.6871 -0.1401 -5.1882 16 14 7.4816 0.3976 -3.1459 17 1 6.7903 0.1372 -1.8577 18 1 8.2374 -0.8132 -3.5557 19 1 8.4211 1.5359 -2.9822 20 6 4.5521 3.6813 -6.0875 21 6 3.2743 4.3915 -5.6297 22 6 2.0854 3.4388 -5.7775 23 1 1.9986 3.1286 -6.8188 24 6 0.8025 4.1548 -5.3503 25 7 2.7246 3.3942 -0.6789 26 7 2.7372 3.4233 0.6083 27 7 2.3036 2.1771 1.0825 28 6 2.1663 1.7759 2.4849 29 6 0.7567 2.1119 2.9758 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 1.8933 -0.5139 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 2.7626 3.5196 -3.2912 36 1 3.4216 1.0825 -6.3548 37 1 3.7783 0.6533 -4.6619 38 1 5.9511 -1.0627 -5.0462 39 1 5.4146 4.3176 -5.8899 40 1 4.4905 3.4704 -7.1551 41 1 3.3755 4.6845 -4.5847 42 1 3.1113 5.2780 -6.2425 43 1 0.8889 4.4646 -4.3089 44 1 0.6498 5.0323 -5.9785 45 1 -0.0449 3.4778 -5.4590 46 1 2.3360 0.7029 2.5740 47 1 2.8987 2.3109 3.0893 48 1 0.0242 1.5768 2.3713 49 1 0.6545 1.8130 4.0190 50 1 0.5871 3.1849 2.8866 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000968327351.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:03:52 Heat of formation + Delta-G solvation = 66.962300 kcal Electronic energy + Delta-G solvation = -31221.723708 eV Core-core repulsion = 27286.299523 eV Total energy + Delta-G solvation = -3935.424185 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -42.12631 -39.31836 -37.37540 -35.84246 -34.10061 -33.75397 -32.66566 -30.96758 -30.66675 -29.95658 -28.75827 -27.21539 -24.78979 -24.21502 -23.92286 -23.16359 -21.99032 -21.00497 -20.49321 -20.03286 -18.52585 -17.85208 -16.60414 -16.38827 -15.78794 -15.13267 -14.97546 -14.80540 -14.64012 -14.10704 -14.03897 -13.87297 -13.72001 -13.50497 -13.24737 -13.11855 -12.79639 -12.73963 -12.56607 -12.47048 -12.36987 -11.92863 -11.87444 -11.49658 -11.39686 -11.32229 -11.16190 -10.97707 -10.85947 -10.82495 -10.68882 -10.41205 -10.14935 -10.13896 -9.84208 -9.63337 -9.43858 -9.34893 -8.93810 -8.38393 -8.22498 -6.56658 -5.69393 -3.10898 1.27804 2.05739 2.07861 3.42489 3.49189 3.50270 3.71209 3.91425 4.24594 4.24764 4.52462 4.57032 4.66165 4.76020 4.90491 5.04497 5.13674 5.17111 5.28522 5.33879 5.34181 5.40510 5.43655 5.50262 5.62004 5.64976 5.65556 5.78756 5.96900 5.99216 6.03149 6.10505 6.13535 6.18254 6.24890 6.38187 6.45549 6.51670 6.54149 6.63813 6.75893 6.84653 6.98184 7.10775 7.45760 7.74893 7.89214 8.05030 8.31580 8.54664 8.85909 9.29932 9.94062 10.49531 11.38529 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.010342 B = 0.004828 C = 0.003953 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2706.818864 B = 5798.059120 C = 7082.303547 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.065 4.065 3 C 0.121 3.879 4 C -0.090 4.090 5 C 0.602 3.398 6 O -0.544 6.544 7 N -0.681 5.681 8 C 0.126 3.874 9 H 0.077 0.923 10 C 0.161 3.839 11 N -0.587 5.587 12 C -0.247 4.247 13 H 0.063 0.937 14 C 0.007 3.993 15 N -0.899 5.899 16 Si 0.895 3.105 17 H -0.291 1.291 18 H -0.291 1.291 19 H -0.280 1.280 20 C 0.143 3.857 21 C -0.131 4.131 22 C -0.093 4.093 23 H 0.077 0.923 24 C -0.145 4.145 25 N -0.201 5.201 26 N -0.076 5.076 27 N -0.364 5.364 28 C 0.117 3.883 29 C -0.172 4.172 30 H 0.068 0.932 31 H 0.048 0.952 32 H 0.066 0.934 33 H 0.120 0.880 34 H 0.074 0.926 35 H 0.402 0.598 36 H 0.026 0.974 37 H 0.098 0.902 38 H 0.253 0.747 39 H 0.053 0.947 40 H 0.018 0.982 41 H 0.056 0.944 42 H 0.054 0.946 43 H 0.052 0.948 44 H 0.049 0.951 45 H 0.049 0.951 46 H 0.099 0.901 47 H 0.104 0.896 48 H 0.067 0.933 49 H 0.082 0.918 50 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.935 3.535 12.343 18.225 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.104 4.104 3 C -0.016 4.016 4 C -0.230 4.230 5 C 0.386 3.614 6 O -0.422 6.422 7 N -0.330 5.330 8 C 0.020 3.980 9 H 0.095 0.905 10 C 0.034 3.966 11 N -0.309 5.309 12 C -0.377 4.377 13 H 0.081 0.919 14 C -0.192 4.192 15 N -0.543 5.543 16 Si 0.725 3.275 17 H -0.218 1.218 18 H -0.218 1.218 19 H -0.205 1.205 20 C 0.017 3.983 21 C -0.170 4.170 22 C -0.112 4.112 23 H 0.096 0.904 24 C -0.202 4.202 25 N -0.074 5.074 26 N -0.055 5.055 27 N -0.150 5.150 28 C -0.004 4.004 29 C -0.230 4.230 30 H 0.087 0.913 31 H 0.067 0.933 32 H 0.085 0.915 33 H 0.138 0.862 34 H 0.093 0.907 35 H 0.238 0.762 36 H 0.043 0.957 37 H 0.116 0.884 38 H 0.063 0.937 39 H 0.071 0.929 40 H 0.035 0.965 41 H 0.075 0.925 42 H 0.072 0.928 43 H 0.071 0.929 44 H 0.068 0.932 45 H 0.068 0.932 46 H 0.118 0.882 47 H 0.123 0.877 48 H 0.086 0.914 49 H 0.101 0.899 50 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -12.636 3.987 12.552 18.251 hybrid contribution 0.686 -0.751 0.807 1.298 sum -11.950 3.236 13.358 18.213 Atomic orbital electron populations 1.21703 0.93322 1.02625 1.02141 1.20465 0.97051 0.87491 1.05419 1.21895 0.97188 0.96145 0.86404 1.21407 1.13676 0.91955 0.95923 1.16599 0.77823 0.84738 0.82284 1.90724 1.48649 1.19364 1.83432 1.45613 1.65199 1.16552 1.05629 1.21843 1.01076 0.95755 0.79320 0.90479 1.21211 0.83430 0.92626 0.99344 1.43966 1.13165 1.16982 1.56820 1.19106 1.00141 0.91259 1.27181 0.91918 1.24942 0.98506 0.96754 0.98997 1.70007 1.45911 0.99776 1.38607 0.86399 0.81218 0.77647 0.82212 1.21796 1.21777 1.20513 1.20919 0.94481 0.88872 0.94050 1.22098 0.96563 0.97364 1.00989 1.21307 0.94647 0.95616 0.99654 0.90434 1.21853 0.97369 0.99840 1.01152 1.74585 1.10354 1.18535 1.03906 1.81916 1.20866 0.99055 1.03663 1.50406 1.45970 1.11405 1.07236 1.21915 0.99932 1.01973 0.76591 1.22250 0.95082 1.03460 1.02216 0.91277 0.93261 0.91484 0.86192 0.90724 0.76154 0.95655 0.88434 0.93737 0.92858 0.96452 0.92490 0.92753 0.92928 0.93183 0.93160 0.88239 0.87733 0.91425 0.89939 0.91301 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.44 9.89 37.15 0.37 -1.08 16 2 C -0.06 -0.80 5.63 -27.89 -0.16 -0.96 16 3 C 0.12 1.83 6.27 -81.87 -0.51 1.32 16 4 C -0.09 -1.65 6.99 -83.55 -0.58 -2.23 16 5 C 0.60 12.12 7.78 -12.48 -0.10 12.02 16 6 O -0.54 -11.70 14.38 5.28 0.08 -11.62 16 7 N -0.68 -13.25 4.25 -54.73 -0.23 -13.48 16 8 C 0.13 2.46 2.24 -67.80 -0.15 2.31 16 9 H 0.08 1.51 7.58 -51.93 -0.39 1.12 16 10 C 0.16 3.90 4.91 -3.71 -0.02 3.88 16 11 N -0.59 -14.62 2.92 -172.32 -0.50 -15.13 16 12 C -0.25 -6.90 9.59 -15.06 -0.14 -7.05 16 13 H 0.06 1.75 7.89 -52.49 -0.41 1.34 16 14 C 0.01 0.19 4.91 -17.43 -0.09 0.11 16 15 N -0.90 -26.78 11.19 55.49 0.62 -26.16 16 16 Si 0.89 22.81 29.59 -169.99 -5.03 17.78 16 17 H -0.29 -7.53 7.11 56.52 0.40 -7.13 16 18 H -0.29 -7.42 7.11 56.52 0.40 -7.01 16 19 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 20 C 0.14 2.97 6.51 -3.71 -0.02 2.94 16 21 C -0.13 -2.20 5.21 -26.59 -0.14 -2.34 16 22 C -0.09 -1.52 2.47 -90.56 -0.22 -1.75 16 23 H 0.08 1.25 8.14 -51.93 -0.42 0.83 16 24 C -0.14 -1.99 9.05 37.16 0.34 -1.65 16 25 N -0.20 -3.72 12.04 32.85 0.40 -3.32 16 26 N -0.08 -1.26 13.78 60.35 0.83 -0.43 16 27 N -0.36 -4.87 3.63 -56.85 -0.21 -5.08 16 28 C 0.12 0.95 7.02 -4.04 -0.03 0.92 16 29 C -0.17 -1.10 10.24 37.16 0.38 -0.72 16 30 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.05 0.42 6.12 -51.93 -0.32 0.10 16 32 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 33 H 0.12 1.83 6.43 -51.93 -0.33 1.49 16 34 H 0.07 0.70 7.18 -51.93 -0.37 0.33 16 35 H 0.40 7.67 6.34 -40.82 -0.26 7.41 16 36 H 0.03 0.65 8.14 -51.92 -0.42 0.22 16 37 H 0.10 2.77 6.03 -51.93 -0.31 2.46 16 38 H 0.25 7.35 8.31 -40.82 -0.34 7.01 16 39 H 0.05 1.10 7.93 -51.93 -0.41 0.68 16 40 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 41 H 0.06 0.99 6.42 -51.93 -0.33 0.66 16 42 H 0.05 0.79 8.14 -51.93 -0.42 0.36 16 43 H 0.05 0.74 7.54 -51.93 -0.39 0.35 16 44 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 45 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 46 H 0.10 0.61 7.16 -51.93 -0.37 0.23 16 47 H 0.10 0.74 8.14 -51.93 -0.42 0.31 16 48 H 0.07 0.46 6.12 -51.93 -0.32 0.14 16 49 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 50 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 LS Contribution 392.42 15.07 5.91 5.91 Total: -1.00 -33.31 392.42 -7.23 -40.54 By element: Atomic # 1 Polarization: 13.29 SS G_CDS: -8.02 Total: 5.27 kcal Atomic # 6 Polarization: 6.80 SS G_CDS: -1.08 Total: 5.72 kcal Atomic # 7 Polarization: -64.51 SS G_CDS: 0.91 Total: -63.60 kcal Atomic # 8 Polarization: -11.70 SS G_CDS: 0.08 Total: -11.62 kcal Atomic # 14 Polarization: 22.81 SS G_CDS: -5.03 Total: 17.78 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -33.31 -7.23 -40.54 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000968327351.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.504 kcal (2) G-P(sol) polarization free energy of solvation -33.310 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.194 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.232 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.542 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.962 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds