Wall clock time and date at job start Tue Mar 31 2020 20:03:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.50698 * 109.47227 * 2 1 4 4 C 1.36600 * 126.57900 * 270.02073 * 3 2 1 5 5 C 1.47522 * 125.77061 * 0.04231 * 4 3 2 6 6 O 1.21597 * 119.99885 * 359.71528 * 5 4 3 7 7 N 1.34774 * 119.99740 * 179.71109 * 5 4 3 8 8 C 1.46506 * 119.99753 * 180.02562 * 7 5 4 9 9 H 1.09004 * 109.49635 * 35.06231 * 8 7 5 10 10 C 1.53197 * 109.49227 * 275.00234 * 8 7 5 11 11 N 1.46921 * 108.77427 * 294.64600 * 10 8 7 12 12 C 1.36938 * 120.62919 * 126.37603 * 11 10 8 13 13 H 1.07993 * 120.00147 * 207.69915 * 12 11 10 14 14 C 1.38816 * 119.99905 * 27.69926 * 12 11 10 15 15 N 1.31620 * 119.99978 * 17.35011 * 14 12 11 16 16 Si 1.86803 * 120.00186 * 197.35375 * 14 12 11 17 17 H 1.48501 * 109.46948 * 89.99731 * 16 14 12 18 18 H 1.48497 * 109.47109 * 209.99787 * 16 14 12 19 19 H 1.48496 * 109.46867 * 330.00185 * 16 14 12 20 20 C 1.46930 * 118.74275 * 306.39455 * 11 10 8 21 21 C 1.53195 * 108.88947 * 53.53911 * 20 11 10 22 22 C 1.53043 * 109.52517 * 155.14811 * 8 7 5 23 23 H 1.08998 * 109.45837 * 178.60928 * 22 8 7 24 24 C 1.52999 * 109.45613 * 298.58124 * 22 8 7 25 25 N 1.34397 * 108.45604 * 179.77887 * 4 3 2 26 26 N 1.28758 * 109.52761 * 0.22704 * 25 4 3 27 27 N 1.34815 * 126.58325 * 90.19632 * 3 2 1 28 28 C 1.46504 * 126.59333 * 359.97438 * 27 3 2 29 29 C 1.52997 * 109.47110 * 270.24909 * 28 27 3 30 30 H 1.08994 * 109.47535 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.47065 * 300.00295 * 1 2 3 32 32 H 1.09003 * 109.47085 * 60.00175 * 1 2 3 33 33 H 1.09004 * 109.47065 * 239.99705 * 2 1 3 34 34 H 1.09003 * 109.47085 * 119.99825 * 2 1 3 35 35 H 0.97001 * 120.00071 * 0.02562 * 7 5 4 36 36 H 1.09011 * 109.58151 * 174.86595 * 10 8 7 37 37 H 1.08991 * 109.58861 * 54.44043 * 10 8 7 38 38 H 0.97006 * 119.99919 * 180.02562 * 15 14 12 39 39 H 1.08997 * 109.58428 * 173.39179 * 20 11 10 40 40 H 1.08990 * 109.58612 * 293.67689 * 20 11 10 41 41 H 1.08998 * 109.49514 * 65.38466 * 21 20 11 42 42 H 1.08999 * 109.49409 * 185.48435 * 21 20 11 43 43 H 1.08997 * 109.47108 * 60.00359 * 24 22 8 44 44 H 1.08995 * 109.46785 * 179.97438 * 24 22 8 45 45 H 1.09003 * 109.47290 * 299.99908 * 24 22 8 46 46 H 1.08998 * 109.46725 * 30.24860 * 28 27 3 47 47 H 1.08997 * 109.47375 * 150.24600 * 28 27 3 48 48 H 1.09007 * 109.47275 * 59.99716 * 29 28 27 49 49 H 1.08998 * 109.46909 * 179.97438 * 29 28 27 50 50 H 1.08999 * 109.46899 * 299.99977 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3033 2.1884 -1.0969 5 6 2.1528 1.7671 -2.5027 6 8 1.7610 0.6458 -2.7628 7 7 2.4497 2.6252 -3.4987 8 6 2.2998 2.2071 -4.8948 9 1 1.4417 1.5409 -4.9849 10 6 3.5662 1.4735 -5.3475 11 7 4.6887 2.4215 -5.3437 12 6 5.8402 2.1366 -4.6596 13 1 6.4541 2.9389 -4.2779 14 6 6.2185 0.8165 -4.4568 15 7 5.6871 -0.1401 -5.1882 16 14 7.4816 0.3976 -3.1459 17 1 6.7903 0.1372 -1.8577 18 1 8.2374 -0.8132 -3.5557 19 1 8.4211 1.5359 -2.9822 20 6 4.5521 3.6813 -6.0875 21 6 3.2743 4.3915 -5.6297 22 6 2.0854 3.4388 -5.7775 23 1 1.9986 3.1286 -6.8188 24 6 0.8025 4.1548 -5.3503 25 7 2.7246 3.3942 -0.6789 26 7 2.7372 3.4233 0.6083 27 7 2.3036 2.1771 1.0825 28 6 2.1663 1.7759 2.4849 29 6 0.7567 2.1119 2.9758 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 1.8933 -0.5139 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 2.7626 3.5196 -3.2912 36 1 3.4216 1.0825 -6.3548 37 1 3.7783 0.6533 -4.6619 38 1 5.9511 -1.0627 -5.0462 39 1 5.4146 4.3176 -5.8899 40 1 4.4905 3.4704 -7.1551 41 1 3.3755 4.6845 -4.5847 42 1 3.1113 5.2780 -6.2425 43 1 0.8889 4.4646 -4.3089 44 1 0.6498 5.0323 -5.9785 45 1 -0.0449 3.4778 -5.4590 46 1 2.3360 0.7029 2.5740 47 1 2.8987 2.3109 3.0893 48 1 0.0242 1.5768 2.3713 49 1 0.6545 1.8130 4.0190 50 1 0.5871 3.1849 2.8866 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000968327351.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:03:51 Heat of formation + Delta-G solvation = 44.670777 kcal Electronic energy + Delta-G solvation = -31222.690341 eV Core-core repulsion = 27286.299523 eV Total energy + Delta-G solvation = -3936.390818 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 1.30 seconds Orbital eigenvalues (eV) -43.34310 -40.89234 -38.98181 -36.83470 -35.90831 -34.76812 -34.25438 -32.83037 -31.63404 -31.28619 -30.23157 -28.89329 -26.04507 -25.55313 -25.12687 -24.45504 -23.53523 -22.72283 -21.71755 -21.20243 -20.20188 -19.11775 -18.58734 -17.51233 -17.01064 -16.82872 -16.60155 -15.87328 -15.81014 -15.72420 -15.52131 -15.31626 -14.93586 -14.74953 -14.73530 -14.56627 -14.10355 -13.89120 -13.79353 -13.56699 -13.42357 -13.16888 -13.11033 -13.01841 -12.76204 -12.73444 -12.63805 -12.48242 -12.34005 -12.22725 -12.00461 -11.93601 -11.88614 -11.55298 -11.30201 -11.20607 -11.05630 -10.94231 -10.54123 -10.25799 -9.84436 -8.62740 -7.85928 -5.29345 0.10962 0.66257 1.08362 1.35811 1.38254 1.46031 2.22560 2.43438 2.47584 3.15629 3.28456 3.42100 3.51729 3.70611 3.72790 3.90503 3.94765 4.00874 4.10655 4.14936 4.21917 4.27760 4.42121 4.49195 4.53702 4.65788 4.69033 4.72582 4.73509 4.85521 4.86751 4.92574 4.95463 4.96605 5.08838 5.11872 5.17075 5.20092 5.24846 5.28346 5.36029 5.47519 5.52044 5.54405 5.60490 5.73845 5.75965 6.40357 6.59101 6.93723 7.15773 7.31270 7.88989 8.38880 9.18718 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.010342 B = 0.004828 C = 0.003953 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2706.818864 B = 5798.059120 C = 7082.303547 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.064 4.064 3 C 0.130 3.870 4 C -0.125 4.125 5 C 0.595 3.405 6 O -0.567 6.567 7 N -0.678 5.678 8 C 0.136 3.864 9 H 0.074 0.926 10 C 0.171 3.829 11 N -0.601 5.601 12 C -0.249 4.249 13 H 0.061 0.939 14 C -0.044 4.044 15 N -0.928 5.928 16 Si 0.949 3.051 17 H -0.298 1.298 18 H -0.290 1.290 19 H -0.268 1.268 20 C 0.137 3.863 21 C -0.118 4.118 22 C -0.087 4.087 23 H 0.084 0.916 24 C -0.135 4.135 25 N -0.224 5.224 26 N -0.090 5.090 27 N -0.347 5.347 28 C 0.100 3.900 29 C -0.165 4.165 30 H 0.088 0.912 31 H 0.072 0.928 32 H 0.039 0.961 33 H 0.087 0.913 34 H 0.112 0.888 35 H 0.405 0.595 36 H 0.004 0.996 37 H 0.051 0.949 38 H 0.246 0.754 39 H 0.052 0.948 40 H 0.019 0.981 41 H 0.052 0.948 42 H 0.091 0.909 43 H 0.047 0.953 44 H 0.076 0.924 45 H 0.055 0.945 46 H 0.128 0.872 47 H 0.118 0.882 48 H 0.066 0.934 49 H 0.115 0.885 50 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.183 4.588 14.444 20.756 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.103 4.103 3 C -0.009 4.009 4 C -0.265 4.265 5 C 0.380 3.620 6 O -0.447 6.447 7 N -0.327 5.327 8 C 0.030 3.970 9 H 0.092 0.908 10 C 0.045 3.955 11 N -0.324 5.324 12 C -0.380 4.380 13 H 0.079 0.921 14 C -0.240 4.240 15 N -0.575 5.575 16 Si 0.778 3.222 17 H -0.226 1.226 18 H -0.217 1.217 19 H -0.193 1.193 20 C 0.012 3.988 21 C -0.157 4.157 22 C -0.106 4.106 23 H 0.102 0.898 24 C -0.192 4.192 25 N -0.097 5.097 26 N -0.069 5.069 27 N -0.133 5.133 28 C -0.018 4.018 29 C -0.223 4.223 30 H 0.107 0.893 31 H 0.091 0.909 32 H 0.058 0.942 33 H 0.105 0.895 34 H 0.131 0.869 35 H 0.241 0.759 36 H 0.022 0.978 37 H 0.070 0.930 38 H 0.056 0.944 39 H 0.070 0.930 40 H 0.037 0.963 41 H 0.070 0.930 42 H 0.110 0.890 43 H 0.066 0.934 44 H 0.095 0.905 45 H 0.074 0.926 46 H 0.146 0.854 47 H 0.136 0.864 48 H 0.085 0.915 49 H 0.133 0.867 50 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -13.886 5.095 14.675 20.836 hybrid contribution 1.078 -1.091 0.227 1.550 sum -12.808 4.003 14.902 20.054 Atomic orbital electron populations 1.21672 0.91565 1.03882 1.01952 1.20562 0.98438 0.85690 1.05627 1.22247 0.95749 0.96917 0.86023 1.21354 1.16293 0.93105 0.95767 1.16962 0.77248 0.84441 0.83322 1.90699 1.49679 1.20202 1.84071 1.45577 1.65173 1.16538 1.05448 1.21599 0.98082 0.97126 0.80187 0.90844 1.20912 0.85553 0.92076 0.97004 1.44154 1.12567 1.18297 1.57398 1.19363 1.00655 0.91196 1.26749 0.92147 1.25575 1.00676 0.96873 1.00885 1.70154 1.47547 0.99607 1.40169 0.85531 0.79448 0.77633 0.79554 1.22630 1.21659 1.19260 1.21118 0.96723 0.87235 0.93697 1.21975 0.94346 0.98138 1.01263 1.21278 0.96085 0.94095 0.99118 0.89800 1.21753 0.95610 1.00543 1.01285 1.74537 1.11306 1.19007 1.04853 1.81785 1.21313 1.00789 1.03020 1.50774 1.43854 1.09948 1.08745 1.22559 1.01646 1.03939 0.73696 1.22240 0.93523 1.02509 1.04049 0.89306 0.90885 0.94196 0.89458 0.86937 0.75895 0.97823 0.93006 0.94431 0.92951 0.96299 0.92950 0.89015 0.93419 0.90513 0.92638 0.85391 0.86406 0.91534 0.86688 0.92790 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.52 9.89 71.98 0.71 -1.81 16 2 C -0.06 -1.50 5.63 29.85 0.17 -1.34 16 3 C 0.13 3.84 6.27 41.72 0.26 4.10 16 4 C -0.13 -4.69 6.99 40.82 0.29 -4.40 16 5 C 0.60 24.92 7.78 86.69 0.67 25.59 16 6 O -0.57 -25.66 14.38 -4.02 -0.06 -25.72 16 7 N -0.68 -27.12 4.25 -445.31 -1.89 -29.02 16 8 C 0.14 5.43 2.24 45.07 0.10 5.54 16 9 H 0.07 2.98 7.58 -2.39 -0.02 2.96 16 10 C 0.17 8.70 4.91 86.36 0.42 9.12 16 11 N -0.60 -30.70 2.92 -699.10 -2.04 -32.74 16 12 C -0.25 -14.25 9.59 84.03 0.81 -13.44 16 13 H 0.06 3.42 7.89 -2.91 -0.02 3.40 16 14 C -0.04 -2.62 4.91 84.86 0.42 -2.20 16 15 N -0.93 -57.71 11.19 21.65 0.24 -57.46 16 16 Si 0.95 48.07 29.59 68.60 2.03 50.10 16 17 H -0.30 -15.36 7.11 99.48 0.71 -14.66 16 18 H -0.29 -14.53 7.11 99.48 0.71 -13.82 16 19 H -0.27 -12.91 7.11 99.48 0.71 -12.21 16 20 C 0.14 5.64 6.51 86.36 0.56 6.20 16 21 C -0.12 -3.77 5.21 30.68 0.16 -3.61 16 22 C -0.09 -2.72 2.47 -10.76 -0.03 -2.75 16 23 H 0.08 2.56 8.14 -2.39 -0.02 2.54 16 24 C -0.13 -3.36 9.05 71.98 0.65 -2.71 16 25 N -0.22 -8.40 12.04 -50.00 -0.60 -9.00 16 26 N -0.09 -2.94 13.78 37.02 0.51 -2.43 16 27 N -0.35 -8.74 3.63 -333.78 -1.21 -9.95 16 28 C 0.10 1.30 7.02 86.38 0.61 1.91 16 29 C -0.17 -1.54 10.24 71.98 0.74 -0.81 16 30 H 0.09 1.34 8.14 -2.39 -0.02 1.32 16 31 H 0.07 1.03 6.12 -2.39 -0.01 1.02 16 32 H 0.04 0.97 8.14 -2.39 -0.02 0.96 16 33 H 0.09 2.72 6.43 -2.39 -0.02 2.70 16 34 H 0.11 1.75 7.18 -2.39 -0.02 1.74 16 35 H 0.40 15.68 6.34 -92.71 -0.59 15.09 16 36 H 0.00 0.21 8.14 -2.38 -0.02 0.19 16 37 H 0.05 3.11 6.03 -2.39 -0.01 3.10 16 38 H 0.25 14.99 8.31 -92.70 -0.77 14.22 16 39 H 0.05 2.13 7.93 -2.39 -0.02 2.11 16 40 H 0.02 0.78 8.14 -2.39 -0.02 0.76 16 41 H 0.05 1.74 6.42 -2.39 -0.02 1.73 16 42 H 0.09 2.31 8.14 -2.39 -0.02 2.29 16 43 H 0.05 1.25 7.54 -2.39 -0.02 1.23 16 44 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 45 H 0.05 1.34 8.14 -2.39 -0.02 1.32 16 46 H 0.13 0.99 7.16 -2.39 -0.02 0.97 16 47 H 0.12 1.28 8.14 -2.39 -0.02 1.26 16 48 H 0.07 0.66 6.12 -2.38 -0.01 0.64 16 49 H 0.11 0.38 8.14 -2.39 -0.02 0.36 16 50 H 0.05 0.69 8.14 -2.39 -0.02 0.67 16 Total: -1.00 -77.28 392.42 3.88 -73.40 By element: Atomic # 1 Polarization: 23.06 SS G_CDS: 0.36 Total: 23.43 kcal Atomic # 6 Polarization: 12.86 SS G_CDS: 6.54 Total: 19.40 kcal Atomic # 7 Polarization: -135.61 SS G_CDS: -4.99 Total: -140.60 kcal Atomic # 8 Polarization: -25.66 SS G_CDS: -0.06 Total: -25.72 kcal Atomic # 14 Polarization: 48.07 SS G_CDS: 2.03 Total: 50.10 kcal Total: -77.28 3.88 -73.40 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000968327351.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.067 kcal (2) G-P(sol) polarization free energy of solvation -77.276 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.792 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.879 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.396 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.671 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.30 seconds